Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH09691 | Soybean | nucleus | 95.24 | 93.69 |
| KRH44505 | Soybean | nucleus | 75.08 | 76.23 |
| KRH08039 | Soybean | cytosol | 4.83 | 76.19 |
| VIT_13s0067g02320.t01 | Wine grape | cytosol | 6.8 | 75.0 |
| KRH47405 | Soybean | nucleus | 58.91 | 73.45 |
| Solyc01g057460.2.1 | Tomato | cytosol | 4.91 | 69.89 |
| KRH45070 | Soybean | cytosol | 5.21 | 66.99 |
| KRH08040 | Soybean | cytosol | 5.14 | 66.02 |
| Solyc04g009500.2.1 | Tomato | nucleus | 27.34 | 62.85 |
| VIT_00s0273g00040.t01 | Wine grape | nucleus | 4.15 | 59.14 |
| VIT_15s0045g00200.t01 | Wine grape | nucleus | 3.85 | 55.43 |
| VIT_00s0239g00150.t01 | Wine grape | cytosol | 4.15 | 54.46 |
| Bra026749.1-P | Field mustard | nucleus | 51.51 | 54.43 |
| VIT_09s0070g00940.t01 | Wine grape | nucleus | 4.31 | 53.77 |
| Bra026108.1-P | Field mustard | nucleus | 44.79 | 52.76 |
| VIT_19s0140g00050.t01 | Wine grape | nucleus | 3.63 | 52.75 |
| AT1G15780.2 | Thale cress | nucleus | 54.31 | 52.64 |
| VIT_00s0239g00010.t01 | Wine grape | cytosol | 4.46 | 52.21 |
| Bra016651.1-P | Field mustard | endoplasmic reticulum, vacuole | 51.96 | 51.27 |
| VIT_00s0239g00070.t01 | Wine grape | cytosol | 4.31 | 50.0 |
| VIT_13s0067g02180.t01 | Wine grape | mitochondrion, nucleus | 5.36 | 49.31 |
| KRH45069 | Soybean | nucleus | 5.89 | 46.71 |
| KRH52764 | Soybean | nucleus | 8.53 | 46.31 |
| VIT_00s0198g00120.t01 | Wine grape | nucleus | 3.4 | 44.55 |
| VIT_00s0198g00090.t01 | Wine grape | cytosol | 4.61 | 44.53 |
| VIT_13s0067g02040.t01 | Wine grape | cytosol, mitochondrion, nucleus, peroxisome, plastid | 5.06 | 43.79 |
| PGSC0003DMT400019244 | Potato | cytosol | 4.76 | 42.0 |
| VIT_09s0070g00870.t01 | Wine grape | extracellular | 3.55 | 41.23 |
| PGSC0003DMT400022608 | Potato | cytosol | 5.51 | 40.56 |
| GSMUA_Achr11P... | Banana | nucleus | 22.43 | 39.39 |
| VIT_00s0173g00220.t01 | Wine grape | nucleus | 4.68 | 38.99 |
| AT1G15790.3 | Thale cress | cytosol | 5.51 | 38.62 |
| PGSC0003DMT400027566 | Potato | mitochondrion, nucleus | 6.8 | 37.19 |
| Bra028029.1-P | Field mustard | cytosol | 5.21 | 32.09 |
| Bra026102.1-P | Field mustard | cytosol | 3.85 | 32.08 |
| VIT_13s0067g02200.t01 | Wine grape | mitochondrion | 4.23 | 29.47 |
| Bra026104.1-P | Field mustard | mitochondrion | 4.38 | 29.15 |
| KRH20610 | Soybean | cytosol | 15.26 | 28.77 |
| Bra026106.1-P | Field mustard | nucleus | 23.87 | 25.9 |
| VIT_00s0169g00040.t01 | Wine grape | cytosol | 4.23 | 21.96 |
| Bra026103.1-P | Field mustard | cytosol | 5.29 | 20.53 |
Protein Annotations
| Gene3D:1.10.246.20 | EntrezGene:100792913 | MapMan:15.3.3.3.5 | EMBL:ACUP02008475 | ncoils:Coil | EnsemblPlantsGene:GLYMA_13G367700 |
| GO:GO:0003674 | GO:GO:0003712 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | UniProt:I1M5W8 | InterPro:KIX_dom_sf | EnsemblPlants:KRH23611 | ProteinID:KRH23611 |
| ProteinID:KRH23611.1 | InterPro:MED15_KIX | PFAM:PF16987 | SUPFAM:SSF47040 | UniParc:UPI000233B811 | SEG:seg |
Description
hypothetical protein
Coordinates
chr13:-:45321490..45332706
Molecular Weight (calculated)
146466.0 Da
IEP (calculated)
9.880
GRAVY (calculated)
-0.856
Length
1324 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDNNNWRPNQ GTEANMDTSD WRGGLHHESR QRIVNKIMDT LKRHLPVTGQ EGLHELQKIA QRFEEKIFTA ATSQSDYLRK ISLKMLTMET KSQGSMAPNL
0101: PTNQGGPSNK PPDPGLGIPP QVHNPGQQHP IPMPNQPPNR QQLLPQNIQN SIASQPSNIA QAPIQNVGQN NPNMQNIPGQ NSVGSTISQN SNMQNMFPGS
0201: QRQIQGRQQV VPQQQQQQSQ NSQQYIYQQQ MQHQLLRQKL QQQQQQQQQQ QQQQQQQQQQ QQQNLLQSNQ LQSSQQPAIQ TSTVMQQPSM MQASLPSIQH
0301: NQQSNNQQST QSVLQQHSQV IRQQQHQQTS IIHQQQTPMT QQSILPTQQQ QQQQLMGAQA NAPNMHHTQI LGSQNNVGDL QQPQRLLTQQ NNLSNLQQQQ
0401: LINQQNNLSN MHQQLGNNVP GLQPQQVLGP QSGNSGMQTS QHSAHVLQQS QQNASNLLPS QVQQSQPQAP QQQLMPQIQS QPAQLQQQLG LQQQPNPLQR
0501: DVQQRLQASG PLLQQSNVLD QQKQLYQSQR PLPETSSTSL DSTAQTGQSS GGDWQEEVYQ KIKSMKESYL PELNEMYQKI VSKLQQHDSL PQQPKSDQLE
0601: KLKVFKMMLE RIITFLQVSK SNISPNFKEK LNSYEKQIIN FINTNRPRKN MPGHLLPPHM HSMPQSQPQV TQVQSHENQM NPQLQTTNMQ GSVATMQQNN
0701: MAGMQHNSLS GVSTVQQSKM NSMQPSTNLD SGPGNAVNSL QQVPVSSLQQ NPVSAPQQTN VNSLSSQAGV NVVQPNLNPL QPGSSMLQHQ QLKQQQEQQM
0801: LQNQQLKQQY QRQLLQRKQQ QMLQQQQQQQ QQQQQQQQQL HQTSKQQLPA QLPTHQIQQL HQMNDANDIK MRQGIGVKPG VFQQHLTSSQ RSAYPHQQMK
0901: GSPFPVSSPQ LLQATSPQIP QHSSPQVDQQ NHLPSLTKVA TPLQSANSPF VVPTPSPPLA PSPMPGDSEK LISGVSSISN AANIGYQQTG GAAAPGQSLA
1001: IGTPGISASP LLAEFTGPDG AHGNSLAPTS GKSTVTEQPI ERLIKAVKSM SPKALSSAVS DIGSVVSMND RIAGSAPGNG SRAAVGEDLV AMTNCRLQAR
1101: NFITQDGANG TRRMKRYTNA TPLNVVTSAG SMNDSIKQLA AEASDLDSTA TSRFKMPRIE ANHSLLEEIR EVNQRLIDTV VDISNEEVDP TAAAAAAEGT
1201: EGTIVKCSYN AVALSPSLKS QYASAQMSPI QPLRLLVPTN YPNCSPILLD KFPVESSKEN EDLSVKAKSR FSISLRSLSQ PMSLGEIART WDVCARTVIS
1301: EHAQQSGGGS FSSKYGTWEN CLTT
0101: PTNQGGPSNK PPDPGLGIPP QVHNPGQQHP IPMPNQPPNR QQLLPQNIQN SIASQPSNIA QAPIQNVGQN NPNMQNIPGQ NSVGSTISQN SNMQNMFPGS
0201: QRQIQGRQQV VPQQQQQQSQ NSQQYIYQQQ MQHQLLRQKL QQQQQQQQQQ QQQQQQQQQQ QQQNLLQSNQ LQSSQQPAIQ TSTVMQQPSM MQASLPSIQH
0301: NQQSNNQQST QSVLQQHSQV IRQQQHQQTS IIHQQQTPMT QQSILPTQQQ QQQQLMGAQA NAPNMHHTQI LGSQNNVGDL QQPQRLLTQQ NNLSNLQQQQ
0401: LINQQNNLSN MHQQLGNNVP GLQPQQVLGP QSGNSGMQTS QHSAHVLQQS QQNASNLLPS QVQQSQPQAP QQQLMPQIQS QPAQLQQQLG LQQQPNPLQR
0501: DVQQRLQASG PLLQQSNVLD QQKQLYQSQR PLPETSSTSL DSTAQTGQSS GGDWQEEVYQ KIKSMKESYL PELNEMYQKI VSKLQQHDSL PQQPKSDQLE
0601: KLKVFKMMLE RIITFLQVSK SNISPNFKEK LNSYEKQIIN FINTNRPRKN MPGHLLPPHM HSMPQSQPQV TQVQSHENQM NPQLQTTNMQ GSVATMQQNN
0701: MAGMQHNSLS GVSTVQQSKM NSMQPSTNLD SGPGNAVNSL QQVPVSSLQQ NPVSAPQQTN VNSLSSQAGV NVVQPNLNPL QPGSSMLQHQ QLKQQQEQQM
0801: LQNQQLKQQY QRQLLQRKQQ QMLQQQQQQQ QQQQQQQQQL HQTSKQQLPA QLPTHQIQQL HQMNDANDIK MRQGIGVKPG VFQQHLTSSQ RSAYPHQQMK
0901: GSPFPVSSPQ LLQATSPQIP QHSSPQVDQQ NHLPSLTKVA TPLQSANSPF VVPTPSPPLA PSPMPGDSEK LISGVSSISN AANIGYQQTG GAAAPGQSLA
1001: IGTPGISASP LLAEFTGPDG AHGNSLAPTS GKSTVTEQPI ERLIKAVKSM SPKALSSAVS DIGSVVSMND RIAGSAPGNG SRAAVGEDLV AMTNCRLQAR
1101: NFITQDGANG TRRMKRYTNA TPLNVVTSAG SMNDSIKQLA AEASDLDSTA TSRFKMPRIE ANHSLLEEIR EVNQRLIDTV VDISNEEVDP TAAAAAAEGT
1201: EGTIVKCSYN AVALSPSLKS QYASAQMSPI QPLRLLVPTN YPNCSPILLD KFPVESSKEN EDLSVKAKSR FSISLRSLSQ PMSLGEIART WDVCARTVIS
1301: EHAQQSGGGS FSSKYGTWEN CLTT
001: MEGNTNWKPN EQGGNRDAAN NRIDWRSQHE PELRQKVLSK IVEKFKEKFH AHEEYKINDI ASKFEENFYS IATDKTTTSQ QWLQQNTQSN LCVICFAKSG
101: PYNRSRFSKT DTCSVTAAAT SSAKFVETTY STAFSSIKLT KHSITDQKSV FDTTEQKRQE QEQLINQLTN LPTSRPNNRD QQGAFQVSSS QQNNNVTLHA
201: MSQQKNNLQS MTRGQQVGQS QPMMSQQYRQ QYPMQQDPQN RNLQKHLDFV QNNTNQFQAA SSLRQTQNIT DQQNQPQQLE RANPSILIMN IIVASQDSTG
301: KTVNVNAGNW QEETYQKIKK LKEMCLPVLS LMHQRVAEKL RETESLPPQP MQAQWIEKLK AGKLSMEHLM FFLNVHRSSV SEKHRDKFSQ YEYHILKFTK
401: SQTMVLRPTQ QQQGQFPPSQ TAMQTQSPQV HVSQSLYKEQ RRSRLMPSSQ NEASSLLQIR PKLDPRDENI IMASSGNVML PSVKQNPRAV NTNISSVQSL
501: QKQKRFHHRQ MQQQQPQQGN HQHQMQTNEM NDVRMRERVN IKARLLEQQV SSSQRQVPKQ ESNVSSSQIQ NHSSPQLVDQ HILPATINKT GTPLNSSGSA
601: FVAPAPSPVP GDSEMPISVE SPVSGVDEIN STLDSSSKLG TQETPLLFVP PPEPITERPI DRLIKAFQAA SPKSLAESVS EISSVISMVD MIGGSFPSSG
701: GSRAGLGEDL SERTRNFTTH EETNLSKRMK RSINIVPPDM SSQIDSYEQL SSLESEVVST TSSGLKVNNI APGYALLQEI KETNGRLVET VVEICDEDSL
801: GTIVTCTYAP VALSATFKDH YKSGKIIFYV SKCLMQAQIQ PLRLLFPMDY PYSSPIVLEE ISFDTSVHKY EDLSARTRSR FSLSMKEFSE PGFSKGIAQT
901: WNDCARATMV EYAERHGGGT FSSKYGAWET VLRAS
101: PYNRSRFSKT DTCSVTAAAT SSAKFVETTY STAFSSIKLT KHSITDQKSV FDTTEQKRQE QEQLINQLTN LPTSRPNNRD QQGAFQVSSS QQNNNVTLHA
201: MSQQKNNLQS MTRGQQVGQS QPMMSQQYRQ QYPMQQDPQN RNLQKHLDFV QNNTNQFQAA SSLRQTQNIT DQQNQPQQLE RANPSILIMN IIVASQDSTG
301: KTVNVNAGNW QEETYQKIKK LKEMCLPVLS LMHQRVAEKL RETESLPPQP MQAQWIEKLK AGKLSMEHLM FFLNVHRSSV SEKHRDKFSQ YEYHILKFTK
401: SQTMVLRPTQ QQQGQFPPSQ TAMQTQSPQV HVSQSLYKEQ RRSRLMPSSQ NEASSLLQIR PKLDPRDENI IMASSGNVML PSVKQNPRAV NTNISSVQSL
501: QKQKRFHHRQ MQQQQPQQGN HQHQMQTNEM NDVRMRERVN IKARLLEQQV SSSQRQVPKQ ESNVSSSQIQ NHSSPQLVDQ HILPATINKT GTPLNSSGSA
601: FVAPAPSPVP GDSEMPISVE SPVSGVDEIN STLDSSSKLG TQETPLLFVP PPEPITERPI DRLIKAFQAA SPKSLAESVS EISSVISMVD MIGGSFPSSG
701: GSRAGLGEDL SERTRNFTTH EETNLSKRMK RSINIVPPDM SSQIDSYEQL SSLESEVVST TSSGLKVNNI APGYALLQEI KETNGRLVET VVEICDEDSL
801: GTIVTCTYAP VALSATFKDH YKSGKIIFYV SKCLMQAQIQ PLRLLFPMDY PYSSPIVLEE ISFDTSVHKY EDLSARTRSR FSLSMKEFSE PGFSKGIAQT
901: WNDCARATMV EYAERHGGGT FSSKYGAWET VLRAS
Arabidopsis Description
MED15CProbable mediator of RNA polymerase II transcription subunit 15c [Source:UniProtKB/Swiss-Prot;Acc:Q9SHV7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.