Factsheet for VIT_15s0045g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0273g00040.t01	Wine grape	nucleus	82.61	81.72
VIT_19s0140g00050.t01	Wine grape	nucleus	73.91	74.73
VIT_09s0070g00940.t01	Wine grape	nucleus	82.61	71.7
VIT_00s0239g00150.t01	Wine grape	cytosol	78.26	71.29
VIT_00s0198g00120.t01	Wine grape	nucleus	76.09	69.31
VIT_00s0239g00070.t01	Wine grape	cytosol	81.52	65.79
VIT_00s0239g00010.t01	Wine grape	cytosol	77.17	62.83
VIT_09s0070g00870.t01	Wine grape	extracellular	71.74	57.89
VIT_00s0198g00090.t01	Wine grape	cytosol	77.17	51.82
VIT_13s0067g02230.t01	Wine grape	mitochondrion	50.0	50.55
VIT_13s0067g02270.t01	Wine grape	cytosol	52.17	50.53
VIT_13s0067g02320.t01	Wine grape	cytosol	61.96	47.5
Solyc01g057460.2.1	Tomato	cytosol	47.83	47.31
VIT_13s0067g02180.t01	Wine grape	mitochondrion, nucleus	73.91	47.22
VIT_00s0173g00220.t01	Wine grape	nucleus	80.43	46.54
VIT_13s0067g02040.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome, plastid	68.48	41.18
VIT_00s0169g00040.t01	Wine grape	cytosol	79.35	28.63
VIT_13s0067g02200.t01	Wine grape	mitochondrion	55.43	26.84
PGSC0003DMT400019244	Potato	cytosol	43.48	26.67
PGSC0003DMT400022608	Potato	cytosol	35.87	18.33
Bra026104.1-P	Field mustard	mitochondrion	38.04	17.59
Bra028029.1-P	Field mustard	cytosol	40.22	17.21
AT1G15790.3	Thale cress	cytosol	32.61	15.87
Bra026102.1-P	Field mustard	cytosol	27.17	15.72
PGSC0003DMT400027566	Potato	mitochondrion, nucleus	30.43	11.57
VIT_07s0031g02580.t01	Wine grape	nucleus	39.13	9.55
Solyc04g009500.2.1	Tomato	nucleus	52.17	8.33
Bra026103.1-P	Field mustard	cytosol	27.17	7.33
VIT_08s0040g00740.t01	Wine grape	nucleus	26.09	5.9
KRH47405	Soybean	nucleus	54.35	4.71
KRH44505	Soybean	nucleus	57.61	4.06
KRH23611	Soybean	nucleus	55.43	3.85
KRH09691	Soybean	nucleus	55.43	3.79
Bra026749.1-P	Field mustard	nucleus	43.48	3.19
Bra016651.1-P	Field mustard	endoplasmic reticulum, vacuole	45.65	3.13
Bra026106.1-P	Field mustard	nucleus	41.3	3.11
AT1G15780.2	Thale cress	nucleus	45.65	3.07
Bra026108.1-P	Field mustard	nucleus	22.83	1.87
VIT_05s0102g01050.t01	Wine grape	plastid	5.43	1.63
GSMUA_Achr11P...	Banana	nucleus	2.17	0.27
VIT_07s0031g02570.t01	Wine grape	cytosol	2.17	0.26
VIT_13s0047g01240.t01	Wine grape	nucleus	1.09	0.08
VIT_08s0040g00730.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

ArrayExpress:VIT_15s0045g00200	EMBL:FN596510	EnsemblPlants:VIT_15s0045g00200.t01	EnsemblPlantsGene:VIT_15s0045g00200	EntrezGene:100854412	EntrezGene:LOC100854412
Gene3D:1.10.246.20	InterPro:MED15_KIX	PANTHER:PTHR33137	PANTHER:PTHR33137:SF4	PFAM:PF16987	ProteinID:CCB60741
ProteinID:CCB60741.1	UniParc:UPI000210AA98	UniProt:F6I1C5	wikigene:100854412	wikigene:LOC100854412	MapMan:35.2

Description

No Description!

Coordinates

chr15:-:4832484..4854197

Molecular Weight (calculated)

10330.5 Da

IEP (calculated)

10.605

GRAVY (calculated)

-0.698

Length

92 amino acids

Sequence
(BLAST)

1: MSSMDTLKRH LPISGLKGLH ELRKIVERFE KKIYSAATSQ SDYFRKISLK MLTMETKSFN AATNSLPSNS AGHNKKSPND KKSPATPILE SY

Best Arabidopsis Sequence Match ( AT1G15780.1 )
(BLAST)

0001: MDNNNWRPSL PNGEPAMDTG DWRTQLPPDS RQKIVNKIME TLKKHLPFSG PEGINELRRI AARFEEKIFS GALNQTDYLR KISMKMLTME TKSQNAAGSS
0101: AAIPAANNGT SIDSIPTNQG QLLPGSLSTN QSQAPQPLLS QTMQNNTASG MTGSTALPSS MPPVSSITNN NTTSVVNQNA NMQNVAGMLQ DSSGQHGLSS
0201: NMFSGPQRQM LGRPHAMSSQ QQQQPYLYQQ QLQQQLLKQN FQSGNVPNPN SLLPSHIQQQ QQNVLQPNQL HSSQQPGVPT SATQPSTVNS APLQGLHTNQ
0301: QSSPQLSSQQ TTQSMLRQHQ SSMLRQHPQS QQASGIHQQQ SSLPQQSISP LQQQPTQLMR QQAANSSGIQ QKQMMGQHVV GDMQQQHQQR LLNQQNNVMN
0401: IQQQQSQQQP LQQPQQQQKQ QPPAQQQLMS QQNSLQATHQ NPLGTQSNVA GLQQPQQQML NSQVGNSSLQ NNQHSVHMLS QPTVGLQRTH QAGHGLYSSQ
0501: GQQSQNQPSQ QQMMPQLQSH HQQLGLQQQP NLLQQDVQQR LQASGQVTGS LLPPQNVVDQ QRQLYQSQRT LPEMPSSSLD STAQTESANG GDWQEEVYQK
0601: IKSMKETYLP DLNEIYQRVA AKLQQDSMPQ QQRSDQLEKL RQFKTMLERM IQFLSVSKSN IMPALKDKVA YYEKQIIGFL NMHRPRKPVQ QGQLPQSQMQ
0701: PMQQPQSQTV QDQSHDNQTN PQMQSMSMQG AGPRAQQSSM TNMQSNVLSS RPGVSAPQQN IPSSIPASSL ESGQGNTLNN GQQVAMGSMQ QNTSQLVNNS
0801: SASAQSGLST LQSNVNQPQL SSSLLQHQHL KQQQDQQMQL KQQFQQRQMQ QQQLQARQQQ QQQQLQARQQ AAQLQQMNDM NDLTSRQGMN VSRGMFQQHS
0901: MQGQRANYPL QQLKPGAVSS PQLLQGASPQ MSQHLSPQVD QKNTVNKMGT PLQPANSPFV VPSPSSTPLA PSPMQVDSEK PGSSSLSMGN IARQQATGMQ
1001: GVVQSLAIGT PGISASPLLQ EFTSPDGNIL NSSTITSGKP SATELPIERL IRAVKSISPQ ALSSAVSDIG SVVSMVDRIA GSAPGNGSRA SVGEDLVAMT
1101: KCRLQARNFM TQEGMMATKK MKRHTTAMPL SVASLGGSVG DNYKQFAGSE TSDLESTATS DGKKARTETE HALLEEIKEI NQRLIDTVVE ISDDEDAADP
1201: SEVAISSIGC EGTTVRFSFI AVSLSPALKA HLSSTQMSPI QPLRLLVPCS YPNGSPSLLD KLPVETSKEN EDLSSKAMAR FNILLRSLSQ PMSLKDIAKT
1301: WDACARAVIC EYAQQFGGGT FSSKYGTWEK YVAAS

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Oth /.../aryotes - 38082 (source: NCBI BLink). [Source:TAIR;Acc:AT1G15780]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.