Factsheet for VIT_13s0067g02230.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0273g00040.t01	Wine grape	nucleus	52.75	51.61
VIT_00s0239g00150.t01	Wine grape	cytosol	56.04	50.49
VIT_15s0045g00200.t01	Wine grape	nucleus	50.55	50.0
VIT_09s0070g00940.t01	Wine grape	nucleus	54.95	47.17
VIT_00s0239g00070.t01	Wine grape	cytosol	57.14	45.61
VIT_19s0140g00050.t01	Wine grape	nucleus	43.96	43.96
GSMUA_Achr8P09790_001	Banana	cytosol	38.46	43.75
VIT_00s0198g00120.t01	Wine grape	nucleus	45.05	40.59
VIT_13s0067g02270.t01	Wine grape	cytosol	41.76	40.0
VIT_00s0239g00010.t01	Wine grape	cytosol	49.45	39.82
VIT_09s0070g00870.t01	Wine grape	extracellular	47.25	37.72
VIT_13s0067g02180.t01	Wine grape	mitochondrion, nucleus	59.34	37.5
VIT_13s0067g02320.t01	Wine grape	cytosol	48.35	36.67
VIT_00s0198g00090.t01	Wine grape	cytosol	52.75	35.04
VIT_13s0067g02040.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome, plastid	53.85	32.03
VIT_00s0173g00220.t01	Wine grape	nucleus	54.95	31.45
Os08t0523600-01	Rice	cytosol, nucleus	32.97	31.25
TraesCS1B01G359700.1	Wheat	cytosol, mitochondrion, nucleus	36.26	26.4
TraesCS1D01G348800.1	Wheat	nucleus	35.16	26.02
TraesCS1A01G346100.1	Wheat	nucleus	32.97	24.59
VIT_13s0067g02200.t01	Wine grape	mitochondrion	50.55	24.21
VIT_00s0169g00040.t01	Wine grape	cytosol	53.85	19.22
KXG25352	Sorghum	nucleus	31.87	18.59
TraesCS2B01G599400.1	Wheat	cytosol	42.86	17.33
TraesCSU01G036900.1	Wheat	cytosol	42.86	17.18
TraesCS2D01G594100.1	Wheat	cytosol	42.86	16.81
TraesCS2B01G598700.1	Wheat	cytosol	41.76	16.38
HORVU2Hr1G123080.2	Barley	cytosol	39.56	15.58
HORVU5Hr1G125120.1	Barley	cytosol	29.67	10.8
TraesCS7D01G546200.1	Wheat	nucleus	36.26	9.14
TraesCS7B01G493100.1	Wheat	nucleus	35.16	8.63
VIT_07s0031g02580.t01	Wine grape	nucleus	32.97	7.96
TraesCS5D01G551100.1	Wheat	nucleus	37.36	7.93
TraesCS7B01G495400.1	Wheat	cytosol	35.16	7.92
OQU80675	Sorghum	nucleus	36.26	7.76
TraesCS4A01G315600.1	Wheat	nucleus	36.26	6.83
VIT_08s0040g00740.t01	Wine grape	nucleus	27.47	6.14
TraesCS1D01G411400.1	Wheat	nucleus	38.46	5.76
TraesCS1B01G433100.1	Wheat	nucleus	37.36	5.59
TraesCS1A01G403500.2	Wheat	nucleus	36.26	5.46
HORVU5Hr1G106220.2	Barley	cytosol, nucleus	30.77	5.04
HORVU7Hr1G118370.1	Barley	nucleus	43.96	3.27
Os08t0564800-01	Rice	extracellular	46.15	3.18
HORVU7Hr1G060970.1	Barley	nucleus	45.05	3.12
TraesCS7A01G283500.3	Wheat	nucleus	43.96	3.06
GSMUA_Achr11P...	Banana	nucleus	42.86	3.05
EES14038	Sorghum	nucleus	43.96	3.04
GSMUA_Achr8P09780_001	Banana	nucleus	45.05	3.04
Zm00001d031863_P013	Maize	nucleus	42.86	2.98
Zm00001d049894_P011	Maize	nucleus	42.86	2.98
TraesCS7D01G281700.2	Wheat	nucleus	42.86	2.97
TraesCS7B01G177500.1	Wheat	nucleus	42.86	2.97
TraesCS7D01G526100.1	Wheat	nucleus	41.76	2.92
TraesCS7A01G540000.1	Wheat	nucleus	41.76	2.92
TraesCS7B01G460900.1	Wheat	nucleus	40.66	2.84
VIT_05s0102g01050.t01	Wine grape	plastid	3.3	0.98
VIT_07s0031g02570.t01	Wine grape	cytosol	3.3	0.38
VIT_13s0047g01240.t01	Wine grape	nucleus	1.1	0.08
VIT_08s0040g00730.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

ArrayExpress:VIT_13s0067g02230	EMBL:FN596756	EnsemblPlants:VIT_13s0067g02230.t01	EnsemblPlantsGene:VIT_13s0067g02230	Gene3D:1.10.246.20	GO:GO:0003674
GO:GO:0003712	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:MED15_KIX	ncoils:Coil	PANTHER:PTHR33137	PANTHER:PTHR33137:SF4	PFAM:PF16987
ProteinID:CBI40657	ProteinID:CBI40657.3	UniParc:UPI0001BE52C3	UniProt:D7UD42	MapMan:35.2	:

Description

No Description!

Coordinates

chr13_random:+:1250453..1256555

Molecular Weight (calculated)

10561.0 Da

IEP (calculated)

11.191

GRAVY (calculated)

-0.438

Length

91 amino acids

Sequence
(BLAST)

1: MTLRFCTFGF LVNMDKLKKH VPVSRPVELN ELRKAAERFE NKIYSASRSQ LEYIRKLSLK MLELETKSFN VAINSLPSSP AARSRQSLRS R

Best Arabidopsis Sequence Match ( AT1G15780.1 )
(BLAST)

0001: MDNNNWRPSL PNGEPAMDTG DWRTQLPPDS RQKIVNKIME TLKKHLPFSG PEGINELRRI AARFEEKIFS GALNQTDYLR KISMKMLTME TKSQNAAGSS
0101: AAIPAANNGT SIDSIPTNQG QLLPGSLSTN QSQAPQPLLS QTMQNNTASG MTGSTALPSS MPPVSSITNN NTTSVVNQNA NMQNVAGMLQ DSSGQHGLSS
0201: NMFSGPQRQM LGRPHAMSSQ QQQQPYLYQQ QLQQQLLKQN FQSGNVPNPN SLLPSHIQQQ QQNVLQPNQL HSSQQPGVPT SATQPSTVNS APLQGLHTNQ
0301: QSSPQLSSQQ TTQSMLRQHQ SSMLRQHPQS QQASGIHQQQ SSLPQQSISP LQQQPTQLMR QQAANSSGIQ QKQMMGQHVV GDMQQQHQQR LLNQQNNVMN
0401: IQQQQSQQQP LQQPQQQQKQ QPPAQQQLMS QQNSLQATHQ NPLGTQSNVA GLQQPQQQML NSQVGNSSLQ NNQHSVHMLS QPTVGLQRTH QAGHGLYSSQ
0501: GQQSQNQPSQ QQMMPQLQSH HQQLGLQQQP NLLQQDVQQR LQASGQVTGS LLPPQNVVDQ QRQLYQSQRT LPEMPSSSLD STAQTESANG GDWQEEVYQK
0601: IKSMKETYLP DLNEIYQRVA AKLQQDSMPQ QQRSDQLEKL RQFKTMLERM IQFLSVSKSN IMPALKDKVA YYEKQIIGFL NMHRPRKPVQ QGQLPQSQMQ
0701: PMQQPQSQTV QDQSHDNQTN PQMQSMSMQG AGPRAQQSSM TNMQSNVLSS RPGVSAPQQN IPSSIPASSL ESGQGNTLNN GQQVAMGSMQ QNTSQLVNNS
0801: SASAQSGLST LQSNVNQPQL SSSLLQHQHL KQQQDQQMQL KQQFQQRQMQ QQQLQARQQQ QQQQLQARQQ AAQLQQMNDM NDLTSRQGMN VSRGMFQQHS
0901: MQGQRANYPL QQLKPGAVSS PQLLQGASPQ MSQHLSPQVD QKNTVNKMGT PLQPANSPFV VPSPSSTPLA PSPMQVDSEK PGSSSLSMGN IARQQATGMQ
1001: GVVQSLAIGT PGISASPLLQ EFTSPDGNIL NSSTITSGKP SATELPIERL IRAVKSISPQ ALSSAVSDIG SVVSMVDRIA GSAPGNGSRA SVGEDLVAMT
1101: KCRLQARNFM TQEGMMATKK MKRHTTAMPL SVASLGGSVG DNYKQFAGSE TSDLESTATS DGKKARTETE HALLEEIKEI NQRLIDTVVE ISDDEDAADP
1201: SEVAISSIGC EGTTVRFSFI AVSLSPALKA HLSSTQMSPI QPLRLLVPCS YPNGSPSLLD KLPVETSKEN EDLSSKAMAR FNILLRSLSQ PMSLKDIAKT
1301: WDACARAVIC EYAQQFGGGT FSSKYGTWEK YVAAS

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Oth /.../aryotes - 38082 (source: NCBI BLink). [Source:TAIR;Acc:AT1G15780]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.