Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14038 | Sorghum | nucleus | 91.9 | 91.48 |
| Zm00001d049894_P011 | Maize | nucleus | 88.3 | 88.3 |
| Os08t0564800-01 | Rice | extracellular | 78.36 | 77.65 |
| HORVU7Hr1G060970.1 | Barley | nucleus | 76.61 | 76.31 |
| TraesCS7B01G177500.1 | Wheat | nucleus | 76.3 | 75.89 |
| TraesCS7A01G283500.3 | Wheat | nucleus | 75.61 | 75.67 |
| TraesCS7D01G281700.2 | Wheat | nucleus | 75.92 | 75.63 |
| TraesCS7D01G526100.1 | Wheat | nucleus | 73.32 | 73.71 |
| TraesCS7B01G460900.1 | Wheat | nucleus | 73.24 | 73.52 |
| TraesCS7A01G540000.1 | Wheat | nucleus | 73.09 | 73.43 |
| HORVU7Hr1G118370.1 | Barley | nucleus | 65.9 | 70.48 |
| PGSC0003DMT400082469 | Potato | extracellular | 5.2 | 68.69 |
| TraesCS1D01G348800.1 | Wheat | nucleus | 6.27 | 66.67 |
| TraesCS1A01G346100.1 | Wheat | nucleus | 6.19 | 66.39 |
| TraesCS1B01G359700.1 | Wheat | cytosol, mitochondrion, nucleus | 6.27 | 65.6 |
| TraesCS1B01G433100.1 | Wheat | nucleus | 29.43 | 63.32 |
| TraesCS1D01G411400.1 | Wheat | nucleus | 29.36 | 63.16 |
| TraesCS7B01G493100.1 | Wheat | nucleus | 17.89 | 63.07 |
| TraesCS1A01G403500.2 | Wheat | nucleus | 28.98 | 62.75 |
| TraesCS7B01G495400.1 | Wheat | cytosol | 19.27 | 62.38 |
| TraesCS7D01G546200.1 | Wheat | nucleus | 17.13 | 62.05 |
| Os08t0523600-01 | Rice | cytosol, nucleus | 4.43 | 60.42 |
| GSMUA_Achr8P09790_001 | Banana | cytosol | 3.52 | 57.5 |
| HORVU5Hr1G106220.2 | Barley | cytosol, nucleus | 24.39 | 57.37 |
| TraesCS2D01G594100.1 | Wheat | cytosol | 9.4 | 53.02 |
| HORVU2Hr1G123080.2 | Barley | cytosol | 9.33 | 52.81 |
| GSMUA_Achr11P... | Banana | nucleus | 51.45 | 52.7 |
| TraesCS2B01G599400.1 | Wheat | cytosol | 9.02 | 52.44 |
| GSMUA_Achr8P09780_001 | Banana | nucleus | 53.44 | 51.82 |
| TraesCSU01G036900.1 | Wheat | cytosol | 8.94 | 51.54 |
| TraesCS2B01G598700.1 | Wheat | cytosol | 9.02 | 50.86 |
| CDX81731 | Canola | plastid | 29.74 | 46.2 |
| VIT_13s0067g02230.t01 | Wine grape | mitochondrion | 2.98 | 42.86 |
| CDY19981 | Canola | cytosol | 5.35 | 40.0 |
| CDY52868 | Canola | cytosol | 4.05 | 37.59 |
| Bra026748.1-P | Field mustard | cytosol | 4.05 | 37.59 |
| AT1G15770.1 | Thale cress | cytosol | 7.8 | 34.81 |
| KRH08040 | Soybean | cytosol | 2.68 | 33.98 |
| KRH45070 | Soybean | cytosol | 2.68 | 33.98 |
| CDY33382 | Canola | nucleus | 8.79 | 32.12 |
| Bra036204.1-P | Field mustard | nucleus | 15.14 | 32.04 |
| CDY19982 | Canola | nucleus | 15.06 | 31.88 |
| KRH52764 | Soybean | nucleus | 5.73 | 30.74 |
| CDY35787 | Canola | nucleus | 20.26 | 29.78 |
| CDX85281 | Canola | nucleus | 20.26 | 28.74 |
| CDY66823 | Canola | cytosol, nucleus | 19.42 | 28.29 |
| Bra040585.1-P | Field mustard | nucleus | 19.42 | 28.25 |
| Bra025408.1-P | Field mustard | nucleus | 22.55 | 27.99 |
| CDY00085 | Canola | nucleus | 18.2 | 27.67 |
| KRH20610 | Soybean | cytosol | 14.53 | 27.07 |
| CDX86356 | Canola | nucleus | 19.34 | 26.8 |
| AT2G10440.1 | Thale cress | nucleus | 18.5 | 25.88 |
| CDY19980 | Canola | nucleus | 10.55 | 23.27 |
| CDY33381 | Canola | cytosol, extracellular | 5.73 | 23.22 |
| CDY36590 | Canola | cytosol | 4.66 | 20.82 |
| Bra026105.1-P | Field mustard | cytosol | 8.49 | 10.54 |
Protein Annotations
| EnsemblPlants:Zm00001d031863_P013 | EnsemblPlants:Zm00001d031863_T013 | EnsemblPlantsGene:Zm00001d031863 | EntrezGene:103643172 | Gene3D:1.10.246.20 | InterPro:MED15_KIX |
| ncoils:Coil | PFAM:PF16987 | ProteinID:ONM03851.1 | SEG:seg | UniParc:UPI0008441757 | UniProt:A0A1D6KLU5 |
| MapMan:15.3.3.3.5 | : | : | : | : | : |
Description
Mediator of RNA polymerase II transcription subunit 15a
Coordinates
chr1:-:204518549..204537518
Molecular Weight (calculated)
143450.0 Da
IEP (calculated)
9.808
GRAVY (calculated)
-0.730
Length
1308 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDGAANWRPT QGADPATVAA VGGVDPNAAA PTGSDWRTQL QPEARQRIVN KIRMETLKKH LPVSVPEGLT ELHKIAVRFE EKIYTAATSQ SDYLRKISLK
0101: MLSMESQKKT QQNPGNAQVI PNQNPPGPGS NPAQSSAIPL MSQQQTRQPN ASTSVQGSLP SVGQNLSSVS QTLTLQNLSG MPQNTMNNGL AQGTPQDMYA
0201: AQRQMAGRQQ QQQQQQAHNQ FMYQQQKLLM NQKLQQNSRM QPHIQQQQTL LQSTQMQSSQ QPMVQMSSGL QPGQIAIPQT QSMAMQSATQ SGIQQNALNS
0301: VQQPVQSLLQ QPTPSVVRQQ QHPQSMHQQS SLQQTQPTQQ PNIPLQQQPQ QLMGHQSNLQ QNQLVNQQSG AVEMQQQQRL PVQSTNLLNM HQTQQMMNQQ
0401: SMPLHQPQQL ANQGNVSSLN QQQQQLLGTV PNVRMHMLQQ QKPIQQPQQQ QHAQQTSMGL MQPQSQQNQL QQPQQHMMSQ FQSQPNQTQQ QLGMQQRLQT
0501: SAGMLLQQNN IDQQKQYVQA QKVLQEAPST SVDSTAQTGH PGTGDSQEEL YQMIKSLKDQ YFAELNDVYN KISMKIQNID NHMPAQKSAE QYERLKGFKG
0601: MLERILHFLQ ANKSSIQPGF REKISIFERQ ILSIMSSQRR KPVQAPGQQT FQQSGGQAPS SNMSQQHQTS QGLQQHDSHT NQMPQASLPS MNTGVPTSGA
0701: PGIQHVPAPQ ASNFGVPTTQ QNVTNAPQAA SNPENAQGNN FNPVQHGSMG TALQQGSTGP MQGALNAQHQ SNSNMISNNA MSTMQTNTNA MQANVNSLQQ
0801: LKQHQEHQMM QNQQMKQRQQ MLQQMQQKKI LQQQLPIQQL QKQQQQGPIQ VQQLHSGNDV NELKVRQGAA IKSGMYQPLN QRNYYQQIKR GDVFPISSPQ
0901: NLQASSPQIS HYSHVDQHSL LQSQVKTGTP LHSANSPFVP SPSPPVAPSP VPLDSDKPLS NLSSLTSAGQ AGHQQTSLAP LTQSIAVNTP GISASPLLAE
1001: FTSADGGQVS VPTQVPTKSS AAERPLDRLL KALRTTQPES LSAAVSDIGS VVSMIDRIAG SAPGNGSRAA VGEDLVAMTK CRLQARNFIT HDGSGASKRM
1101: KRDTGAMPLN VSSAGSLNDS LKQSYTVGTP ELQSTATSRV KCQRAEVNHV LLEEIQEINK QLIDTELHVS EDDAESFTTS DMAEGTVIKC TFTAVAVSPS
1201: LKSMFASAQM SPILPLRLLV PGSYPKCSPV LLDKFPDEQC RNSDDLSTKA KSKFSVLLRG LAEPMSLREI ARTWDACARK VIAEYAQQTG GGSFSSSYGC
1301: WESCVGAS
0101: MLSMESQKKT QQNPGNAQVI PNQNPPGPGS NPAQSSAIPL MSQQQTRQPN ASTSVQGSLP SVGQNLSSVS QTLTLQNLSG MPQNTMNNGL AQGTPQDMYA
0201: AQRQMAGRQQ QQQQQQAHNQ FMYQQQKLLM NQKLQQNSRM QPHIQQQQTL LQSTQMQSSQ QPMVQMSSGL QPGQIAIPQT QSMAMQSATQ SGIQQNALNS
0301: VQQPVQSLLQ QPTPSVVRQQ QHPQSMHQQS SLQQTQPTQQ PNIPLQQQPQ QLMGHQSNLQ QNQLVNQQSG AVEMQQQQRL PVQSTNLLNM HQTQQMMNQQ
0401: SMPLHQPQQL ANQGNVSSLN QQQQQLLGTV PNVRMHMLQQ QKPIQQPQQQ QHAQQTSMGL MQPQSQQNQL QQPQQHMMSQ FQSQPNQTQQ QLGMQQRLQT
0501: SAGMLLQQNN IDQQKQYVQA QKVLQEAPST SVDSTAQTGH PGTGDSQEEL YQMIKSLKDQ YFAELNDVYN KISMKIQNID NHMPAQKSAE QYERLKGFKG
0601: MLERILHFLQ ANKSSIQPGF REKISIFERQ ILSIMSSQRR KPVQAPGQQT FQQSGGQAPS SNMSQQHQTS QGLQQHDSHT NQMPQASLPS MNTGVPTSGA
0701: PGIQHVPAPQ ASNFGVPTTQ QNVTNAPQAA SNPENAQGNN FNPVQHGSMG TALQQGSTGP MQGALNAQHQ SNSNMISNNA MSTMQTNTNA MQANVNSLQQ
0801: LKQHQEHQMM QNQQMKQRQQ MLQQMQQKKI LQQQLPIQQL QKQQQQGPIQ VQQLHSGNDV NELKVRQGAA IKSGMYQPLN QRNYYQQIKR GDVFPISSPQ
0901: NLQASSPQIS HYSHVDQHSL LQSQVKTGTP LHSANSPFVP SPSPPVAPSP VPLDSDKPLS NLSSLTSAGQ AGHQQTSLAP LTQSIAVNTP GISASPLLAE
1001: FTSADGGQVS VPTQVPTKSS AAERPLDRLL KALRTTQPES LSAAVSDIGS VVSMIDRIAG SAPGNGSRAA VGEDLVAMTK CRLQARNFIT HDGSGASKRM
1101: KRDTGAMPLN VSSAGSLNDS LKQSYTVGTP ELQSTATSRV KCQRAEVNHV LLEEIQEINK QLIDTELHVS EDDAESFTTS DMAEGTVIKC TFTAVAVSPS
1201: LKSMFASAQM SPILPLRLLV PGSYPKCSPV LLDKFPDEQC RNSDDLSTKA KSKFSVLLRG LAEPMSLREI ARTWDACARK VIAEYAQQTG GGSFSSSYGC
1301: WESCVGAS
0001: MDNNNWRPSL PNGEPAMDTG DWRTQLPPDS RQKIVNKIME TLKKHLPFSG PEGINELRRI AARFEEKIFS GALNQTDYLR KISMKMLTME TKSQNAAGSS
0101: AAIPAANNGT SIDSIPTNQG QLLPGSLSTN QSQAPQPLLS QTMQNNTASG MTGSTALPSS MPPVSSITNN NTTSVVNQNA NMQNVAGMLQ DSSGQHGLSS
0201: NMFSGPQRQM LGRPHAMSSQ QQQQPYLYQQ QLQQQLLKQN FQSGNVPNPN SLLPSHIQQQ QQNVLQPNQL HSSQQPGVPT SATQPSTVNS APLQGLHTNQ
0301: QSSPQLSSQQ TTQSMLRQHQ SSMLRQHPQS QQASGIHQQQ SSLPQQSISP LQQQPTQLMR QQAANSSGIQ QKQMMGQHVV GDMQQQHQQR LLNQQNNVMN
0401: IQQQQSQQQP LQQPQQQQKQ QPPAQQQLMS QQNSLQATHQ NPLGTQSNVA GLQQPQQQML NSQVGNSSLQ NNQHSVHMLS QPTVGLQRTH QAGHGLYSSQ
0501: GQQSQNQPSQ QQMMPQLQSH HQQLGLQQQP NLLQQDVQQR LQASGQVTGS LLPPQNVVDQ QRQLYQSQRT LPEMPSSSLD STAQTESANG GDWQEEVYQK
0601: IKSMKETYLP DLNEIYQRVA AKLQQDSMPQ QQRSDQLEKL RQFKTMLERM IQFLSVSKSN IMPALKDKVA YYEKQIIGFL NMHRPRKPVQ QGQLPQSQMQ
0701: PMQQPQSQTV QDQSHDNQTN PQMQSMSMQG AGPRAQQSSM TNMQSNVLSS RPGVSAPQQN IPSSIPASSL ESGQGNTLNN GQQVAMGSMQ QNTSQLVNNS
0801: SASAQSGLST LQSNVNQPQL SSSLLQHQHL KQQQDQQMQL KQQFQQRQMQ QQQLQARQQQ QQQQLQARQQ AAQLQQMNDM NDLTSRQGMN VSRGMFQQHS
0901: MQGQRANYPL QQLKPGAVSS PQLLQGASPQ MSQHLSPQVD QKNTVNKMGT PLQPANSPFV VPSPSSTPLA PSPMQVDSEK PGSSSLSMGN IARQQATGMQ
1001: GVVQSLAIGT PGISASPLLQ EFTSPDGNIL NSSTITSGKP SATELPIERL IRAVKSISPQ ALSSAVSDIG SVVSMVDRIA GSAPGNGSRA SVGEDLVAMT
1101: KCRLQARNFM TQEGMMATKK MKRHTTAMPL SVASLGGSVG DNYKQFAGSE TSDLESTATS DGKKARTETE HALLEEIKEI NQRLIDTVVE ISDDEDAADP
1201: SEVAISSIGC EGTTVRFSFI AVSLSPALKA HLSSTQMSPI QPLRLLVPCS YPNGSPSLLD KLPVETSKEN EDLSSKAMAR FNILLRSLSQ PMSLKDIAKT
1301: WDACARAVIC EYAQQFGGGT FSSKYGTWEK YVAAS
0101: AAIPAANNGT SIDSIPTNQG QLLPGSLSTN QSQAPQPLLS QTMQNNTASG MTGSTALPSS MPPVSSITNN NTTSVVNQNA NMQNVAGMLQ DSSGQHGLSS
0201: NMFSGPQRQM LGRPHAMSSQ QQQQPYLYQQ QLQQQLLKQN FQSGNVPNPN SLLPSHIQQQ QQNVLQPNQL HSSQQPGVPT SATQPSTVNS APLQGLHTNQ
0301: QSSPQLSSQQ TTQSMLRQHQ SSMLRQHPQS QQASGIHQQQ SSLPQQSISP LQQQPTQLMR QQAANSSGIQ QKQMMGQHVV GDMQQQHQQR LLNQQNNVMN
0401: IQQQQSQQQP LQQPQQQQKQ QPPAQQQLMS QQNSLQATHQ NPLGTQSNVA GLQQPQQQML NSQVGNSSLQ NNQHSVHMLS QPTVGLQRTH QAGHGLYSSQ
0501: GQQSQNQPSQ QQMMPQLQSH HQQLGLQQQP NLLQQDVQQR LQASGQVTGS LLPPQNVVDQ QRQLYQSQRT LPEMPSSSLD STAQTESANG GDWQEEVYQK
0601: IKSMKETYLP DLNEIYQRVA AKLQQDSMPQ QQRSDQLEKL RQFKTMLERM IQFLSVSKSN IMPALKDKVA YYEKQIIGFL NMHRPRKPVQ QGQLPQSQMQ
0701: PMQQPQSQTV QDQSHDNQTN PQMQSMSMQG AGPRAQQSSM TNMQSNVLSS RPGVSAPQQN IPSSIPASSL ESGQGNTLNN GQQVAMGSMQ QNTSQLVNNS
0801: SASAQSGLST LQSNVNQPQL SSSLLQHQHL KQQQDQQMQL KQQFQQRQMQ QQQLQARQQQ QQQQLQARQQ AAQLQQMNDM NDLTSRQGMN VSRGMFQQHS
0901: MQGQRANYPL QQLKPGAVSS PQLLQGASPQ MSQHLSPQVD QKNTVNKMGT PLQPANSPFV VPSPSSTPLA PSPMQVDSEK PGSSSLSMGN IARQQATGMQ
1001: GVVQSLAIGT PGISASPLLQ EFTSPDGNIL NSSTITSGKP SATELPIERL IRAVKSISPQ ALSSAVSDIG SVVSMVDRIA GSAPGNGSRA SVGEDLVAMT
1101: KCRLQARNFM TQEGMMATKK MKRHTTAMPL SVASLGGSVG DNYKQFAGSE TSDLESTATS DGKKARTETE HALLEEIKEI NQRLIDTVVE ISDDEDAADP
1201: SEVAISSIGC EGTTVRFSFI AVSLSPALKA HLSSTQMSPI QPLRLLVPCS YPNGSPSLLD KLPVETSKEN EDLSSKAMAR FNILLRSLSQ PMSLKDIAKT
1301: WDACARAVIC EYAQQFGGGT FSSKYGTWEK YVAAS
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Oth /.../aryotes - 38082 (source: NCBI BLink). [Source:TAIR;Acc:AT1G15780]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.