Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66823 | Canola | cytosol, nucleus | 99.89 | 100.0 |
| CDY35787 | Canola | nucleus | 90.77 | 91.69 |
| Bra025408.1-P | Field mustard | nucleus | 61.96 | 52.85 |
| Bra036204.1-P | Field mustard | nucleus | 35.48 | 51.62 |
| AT2G10440.1 | Thale cress | nucleus | 40.27 | 38.72 |
| TraesCS1A01G346100.1 | Wheat | nucleus | 3.56 | 26.23 |
| TraesCS1D01G348800.1 | Wheat | nucleus | 3.56 | 26.02 |
| TraesCS1B01G359700.1 | Wheat | cytosol, mitochondrion, nucleus | 3.56 | 25.6 |
| TraesCS5D01G551100.1 | Wheat | nucleus | 11.68 | 24.48 |
| HORVU5Hr1G125120.1 | Barley | cytosol | 6.67 | 24.0 |
| TraesCS7D01G546200.1 | Wheat | nucleus | 9.57 | 23.82 |
| TraesCS7B01G495400.1 | Wheat | cytosol | 10.57 | 23.51 |
| TraesCS4A01G315600.1 | Wheat | nucleus | 12.46 | 23.19 |
| TraesCS1B01G433100.1 | Wheat | nucleus | 15.57 | 23.03 |
| TraesCS1D01G411400.1 | Wheat | nucleus | 15.46 | 22.86 |
| TraesCS7B01G493100.1 | Wheat | nucleus | 9.23 | 22.37 |
| TraesCS1A01G403500.2 | Wheat | nucleus | 15.02 | 22.35 |
| Bra026749.1-P | Field mustard | nucleus | 31.03 | 22.27 |
| HORVU2Hr1G123080.2 | Barley | cytosol | 5.56 | 21.64 |
| Bra026108.1-P | Field mustard | nucleus | 26.47 | 21.17 |
| TraesCS2D01G594100.1 | Wheat | cytosol | 5.45 | 21.12 |
| Bra016651.1-P | Field mustard | endoplasmic reticulum, vacuole | 31.15 | 20.86 |
| Os08t0523600-01 | Rice | cytosol, nucleus | 2.22 | 20.83 |
| TraesCSU01G036900.1 | Wheat | cytosol | 5.23 | 20.7 |
| TraesCS2B01G598700.1 | Wheat | cytosol | 5.34 | 20.69 |
| TraesCS7D01G526100.1 | Wheat | nucleus | 29.7 | 20.52 |
| TraesCS2B01G599400.1 | Wheat | cytosol | 5.12 | 20.44 |
| TraesCS7A01G540000.1 | Wheat | nucleus | 29.59 | 20.43 |
| TraesCS7B01G460900.1 | Wheat | nucleus | 29.25 | 20.18 |
| TraesCS7B01G177500.1 | Wheat | nucleus | 29.48 | 20.15 |
| Os08t0564800-01 | Rice | extracellular | 29.48 | 20.08 |
| TraesCS7A01G283500.3 | Wheat | nucleus | 29.14 | 20.05 |
| HORVU7Hr1G060970.1 | Barley | nucleus | 29.25 | 20.03 |
| TraesCS7D01G281700.2 | Wheat | nucleus | 29.25 | 20.03 |
| GSMUA_Achr8P09800_001 | Banana | nucleus | 3.11 | 20.0 |
| OQU80675 | Sorghum | nucleus | 9.45 | 20.0 |
| EES14038 | Sorghum | nucleus | 29.03 | 19.86 |
| HORVU5Hr1G106220.2 | Barley | cytosol, nucleus | 12.24 | 19.78 |
| HORVU7Hr1G118370.1 | Barley | nucleus | 26.81 | 19.71 |
| Zm00001d031863_P013 | Maize | nucleus | 28.25 | 19.42 |
| Zm00001d049894_P011 | Maize | nucleus | 28.03 | 19.27 |
| Bra026748.1-P | Field mustard | cytosol | 3.0 | 19.15 |
| VIT_08s0040g00740.t01 | Wine grape | nucleus | 8.57 | 18.92 |
| KXG25352 | Sorghum | nucleus | 3.11 | 17.95 |
| Bra026102.1-P | Field mustard | cytosol | 2.89 | 16.35 |
| Bra026106.1-P | Field mustard | nucleus | 18.24 | 13.44 |
| Bra026104.1-P | Field mustard | mitochondrion | 2.89 | 13.07 |
| Bra028029.1-P | Field mustard | cytosol | 3.0 | 12.56 |
| Bra026103.1-P | Field mustard | cytosol | 4.45 | 11.73 |
| Bra026105.1-P | Field mustard | cytosol | 6.12 | 5.22 |
Protein Annotations
| EnsemblPlants:Bra040585.1 | EnsemblPlants:Bra040585.1-P | EnsemblPlantsGene:Bra040585 | Gene3D:1.10.246.20 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003682 | GO:GO:0005488 | GO:GO:0031490 | InterPro:MED15_KIX | ncoils:Coil |
| PANTHER:PTHR33137 | PANTHER:PTHR33137:SF4 | PFAM:PF16987 | SEG:seg | UniParc:UPI000253E6D9 | UniProt:M4FHK7 |
| MapMan:15.3.3.3.5 | : | : | : | : | : |
Description
AT2G10440 (E=2e-062) | unknown protein
Coordinates
chrScaffold000221:+:3160..7175
Molecular Weight (calculated)
102208.0 Da
IEP (calculated)
6.627
GRAVY (calculated)
-0.804
Length
899 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSDISDHHS CRWLDLMEGY SNWKPNEQGR DSLANNANDW RSTHEFDLRK RVIIAIVEKL KICFPKHSQN DINNTACKFE GKIYGMATDK SDYLRKISEK
101: IMVFDQRFKS VQSGSLVNEP NTTQDPAAQA LNQGPSLPTS LSYTQTPTSQ QWFPQNNIHQ SSGFSNQVPI TVSAAQSQNI QMGEGVHSHL LSNSQRQIQG
201: RKQFCTQPQQ QLQSCNDMFQ SQVNQQLLKE NTHHLQPPYM QQHQHQQSLL KQPIHQHLPH HTSLSTIQQS FPQTSVHSSL TSSGQQNSQY LPRHMYVQSQ
301: EQKQQEYEQL ISQLMNGQDT QQNHLTSQQN NWEQRGAFTV SPSQQNNIVS FQEMGQQSSN PHTMYLQQHL YSHSNNASSS LASQQQTYMP GGQSGNFNVY
401: ESSLLGTQGQ GLGQSQPMML QQYQQPQNRI LQQHLDDTQR LHEAVSLHQT QNVANQQNQP YQLQRAPTEN PYINASGGDW QEETYQKIKA LKEKYLPVLS
501: TLLQKVSEKL GEVDSLPQQN TQNEPIEKLR VGKSMLELVV MFLNVHRDNI SESHRDKFSL YEEQVLRFTK NRQTLTQRPM QHQQSPSGHN QHSNISLPQS
601: CMFHEKQFHH LNQLLHSQQQ QQPQTNQQQP QIQNYSSPQF VDHQILSTAF HNTGTSSQSL APSPNLVDLE KPIYVESLVS HDYQLQTAPQ EQPIDRLIEA
701: VHSVTTTPPL DIISQTGSYK RLSSLESEAD STASSGSKAQ KIEPACTLLQ EIKDINGSLV ETVVNICNEE VYPSEVTPGT IVTCSYSPVA LSDTFEAHYK
801: SGHISQIQPL RLLVPVNYPS SPILLLEKLS YDSSLHKYDD LSARTRSRFG LSMKEFSEPM SLKEIAQAWD VCARETMAEY AEQHGGCTFS SNYGHWDPV
101: IMVFDQRFKS VQSGSLVNEP NTTQDPAAQA LNQGPSLPTS LSYTQTPTSQ QWFPQNNIHQ SSGFSNQVPI TVSAAQSQNI QMGEGVHSHL LSNSQRQIQG
201: RKQFCTQPQQ QLQSCNDMFQ SQVNQQLLKE NTHHLQPPYM QQHQHQQSLL KQPIHQHLPH HTSLSTIQQS FPQTSVHSSL TSSGQQNSQY LPRHMYVQSQ
301: EQKQQEYEQL ISQLMNGQDT QQNHLTSQQN NWEQRGAFTV SPSQQNNIVS FQEMGQQSSN PHTMYLQQHL YSHSNNASSS LASQQQTYMP GGQSGNFNVY
401: ESSLLGTQGQ GLGQSQPMML QQYQQPQNRI LQQHLDDTQR LHEAVSLHQT QNVANQQNQP YQLQRAPTEN PYINASGGDW QEETYQKIKA LKEKYLPVLS
501: TLLQKVSEKL GEVDSLPQQN TQNEPIEKLR VGKSMLELVV MFLNVHRDNI SESHRDKFSL YEEQVLRFTK NRQTLTQRPM QHQQSPSGHN QHSNISLPQS
601: CMFHEKQFHH LNQLLHSQQQ QQPQTNQQQP QIQNYSSPQF VDHQILSTAF HNTGTSSQSL APSPNLVDLE KPIYVESLVS HDYQLQTAPQ EQPIDRLIEA
701: VHSVTTTPPL DIISQTGSYK RLSSLESEAD STASSGSKAQ KIEPACTLLQ EIKDINGSLV ETVVNICNEE VYPSEVTPGT IVTCSYSPVA LSDTFEAHYK
801: SGHISQIQPL RLLVPVNYPS SPILLLEKLS YDSSLHKYDD LSARTRSRFG LSMKEFSEPM SLKEIAQAWD VCARETMAEY AEQHGGCTFS SNYGHWDPV
001: MEGNTNWKPN EQGGNRDAAN NRIDWRSQHE PELRQKVLSK IVCSLNDYRK VEKFKEKFHA HEEYKINDIA SKFEENFYSI ATDKNDYLRK LSETLHYIQR
101: TYTRVLASQV VVNQAQSLPA LLPYMQTTTS QQWLQQNTQS NLCVICFAKS GPYNRSRFSK TDTCSVTAAA TSSAKFVETT YSTAFSSIKL TKHSITDQKS
201: VFDTTVLIMN IIVASQDSTG KTVNVNAGNW QEETYQKIKK LKEMCLPVLS LMHQRVAEKL RETESLPPQP MQAQWIEKLK AGKLSMEHLM FFLNVHRSSV
301: SEKHRDKFSQ YEYHILKFTK SQTMVLRPTQ QQQGQFPPSQ TAMQTQSPQV HVSQSLYKEQ RRSRLMPSSQ NEASSLLQIR PKLDPRDENI IMASSGNVML
401: PSVKQNPRAV NTNISSVQSL QKQKRFHHRQ MQQQQPQQGN HQHQMQTNEM NDVRMRERVN IKARLLEQQV SSSQRQVPKQ ESNVSSSQIQ NHSSPQLVDQ
501: HILPATINKT GTPLNSSGSA FVAPAPSPVP GDSEMPISVE SPVSGVDEIN STLDSSSKLG TQETPLLFVP PPEPITERPI DRLIKAFQAA SPKSLAESVS
601: EISSVISMVD MIGGSFPSSG GSRAGLGEDL SERTRNFTTH EETNLSKRMK RSINIVPPDM SSQIDSYEQL SSLESEVVST TSSGLKVNNI APGYALLQEI
701: KETNGRLVET VVEICDEDSL GTIVTCTYAP VALSATFKDH YKSGKIAQIQ PLRLLFPMDY PYSSPIVLEE ISFDTSVHKY EDLSARTRSR FSLSMKEFSE
801: PGFSKGIAQT WNDCARATMV EYAERHGGGT FSSKYGAWET VLRAS
101: TYTRVLASQV VVNQAQSLPA LLPYMQTTTS QQWLQQNTQS NLCVICFAKS GPYNRSRFSK TDTCSVTAAA TSSAKFVETT YSTAFSSIKL TKHSITDQKS
201: VFDTTVLIMN IIVASQDSTG KTVNVNAGNW QEETYQKIKK LKEMCLPVLS LMHQRVAEKL RETESLPPQP MQAQWIEKLK AGKLSMEHLM FFLNVHRSSV
301: SEKHRDKFSQ YEYHILKFTK SQTMVLRPTQ QQQGQFPPSQ TAMQTQSPQV HVSQSLYKEQ RRSRLMPSSQ NEASSLLQIR PKLDPRDENI IMASSGNVML
401: PSVKQNPRAV NTNISSVQSL QKQKRFHHRQ MQQQQPQQGN HQHQMQTNEM NDVRMRERVN IKARLLEQQV SSSQRQVPKQ ESNVSSSQIQ NHSSPQLVDQ
501: HILPATINKT GTPLNSSGSA FVAPAPSPVP GDSEMPISVE SPVSGVDEIN STLDSSSKLG TQETPLLFVP PPEPITERPI DRLIKAFQAA SPKSLAESVS
601: EISSVISMVD MIGGSFPSSG GSRAGLGEDL SERTRNFTTH EETNLSKRMK RSINIVPPDM SSQIDSYEQL SSLESEVVST TSSGLKVNNI APGYALLQEI
701: KETNGRLVET VVEICDEDSL GTIVTCTYAP VALSATFKDH YKSGKIAQIQ PLRLLFPMDY PYSSPIVLEE ISFDTSVHKY EDLSARTRSR FSLSMKEFSE
801: PGFSKGIAQT WNDCARATMV EYAERHGGGT FSSKYGAWET VLRAS
Arabidopsis Description
MED15CProbable mediator of RNA polymerase II transcription subunit 15c [Source:UniProtKB/Swiss-Prot;Acc:Q9SHV7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.