Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14038 | Sorghum | nucleus | 92.35 | 91.93 |
| Zm00001d031863_P013 | Maize | nucleus | 88.3 | 88.3 |
| Os08t0564800-01 | Rice | extracellular | 79.28 | 78.56 |
| TraesCS7B01G177500.1 | Wheat | nucleus | 76.99 | 76.58 |
| TraesCS7A01G283500.3 | Wheat | nucleus | 76.38 | 76.43 |
| TraesCS7D01G281700.2 | Wheat | nucleus | 76.61 | 76.31 |
| HORVU7Hr1G060970.1 | Barley | nucleus | 76.45 | 76.16 |
| TraesCS7D01G526100.1 | Wheat | nucleus | 73.85 | 74.25 |
| TraesCS7B01G460900.1 | Wheat | nucleus | 73.55 | 73.83 |
| TraesCS7A01G540000.1 | Wheat | nucleus | 73.47 | 73.81 |
| HORVU7Hr1G118370.1 | Barley | nucleus | 67.05 | 71.71 |
| PGSC0003DMT400082469 | Potato | extracellular | 5.12 | 67.68 |
| TraesCS1D01G348800.1 | Wheat | nucleus | 6.12 | 65.04 |
| TraesCS1B01G359700.1 | Wheat | cytosol, mitochondrion, nucleus | 6.19 | 64.8 |
| TraesCS1A01G346100.1 | Wheat | nucleus | 6.04 | 64.75 |
| TraesCS1D01G411400.1 | Wheat | nucleus | 29.97 | 64.47 |
| TraesCS1B01G433100.1 | Wheat | nucleus | 29.82 | 64.14 |
| TraesCS1A01G403500.2 | Wheat | nucleus | 29.59 | 64.07 |
| TraesCS7B01G493100.1 | Wheat | nucleus | 17.74 | 62.53 |
| Os08t0523600-01 | Rice | cytosol, nucleus | 4.59 | 62.5 |
| TraesCS7B01G495400.1 | Wheat | cytosol | 19.19 | 62.13 |
| TraesCS7D01G546200.1 | Wheat | nucleus | 16.9 | 61.22 |
| HORVU5Hr1G106220.2 | Barley | cytosol, nucleus | 24.62 | 57.91 |
| GSMUA_Achr8P09790_001 | Banana | cytosol | 3.52 | 57.5 |
| GSMUA_Achr11P... | Banana | nucleus | 52.22 | 53.48 |
| GSMUA_Achr8P09780_001 | Banana | nucleus | 54.59 | 52.93 |
| HORVU2Hr1G123080.2 | Barley | cytosol | 9.25 | 52.38 |
| TraesCS2D01G594100.1 | Wheat | cytosol | 9.17 | 51.72 |
| TraesCS2B01G599400.1 | Wheat | cytosol | 8.79 | 51.11 |
| TraesCSU01G036900.1 | Wheat | cytosol | 8.72 | 50.22 |
| TraesCS2B01G598700.1 | Wheat | cytosol | 8.79 | 49.57 |
| CDX81731 | Canola | plastid | 30.96 | 48.1 |
| VIT_13s0067g02230.t01 | Wine grape | mitochondrion | 2.98 | 42.86 |
| CDY19981 | Canola | cytosol | 5.2 | 38.86 |
| AT1G15770.1 | Thale cress | cytosol | 8.41 | 37.54 |
| KRH08040 | Soybean | cytosol | 2.91 | 36.89 |
| KRH45070 | Soybean | cytosol | 2.91 | 36.89 |
| CDY52868 | Canola | cytosol | 3.9 | 36.17 |
| Bra026748.1-P | Field mustard | cytosol | 3.9 | 36.17 |
| KRH52764 | Soybean | nucleus | 5.96 | 31.97 |
| CDY33382 | Canola | nucleus | 8.64 | 31.56 |
| Bra036204.1-P | Field mustard | nucleus | 14.68 | 31.07 |
| CDY19982 | Canola | nucleus | 14.6 | 30.91 |
| CDY35787 | Canola | nucleus | 19.88 | 29.21 |
| CDX85281 | Canola | nucleus | 20.26 | 28.74 |
| CDY66823 | Canola | cytosol, nucleus | 19.27 | 28.06 |
| Bra040585.1-P | Field mustard | nucleus | 19.27 | 28.03 |
| Bra025408.1-P | Field mustard | nucleus | 22.4 | 27.8 |
| CDY00085 | Canola | nucleus | 18.12 | 27.56 |
| KRH20610 | Soybean | cytosol | 14.37 | 26.78 |
| CDX86356 | Canola | nucleus | 19.19 | 26.59 |
| AT2G10440.1 | Thale cress | nucleus | 18.2 | 25.45 |
| CDY19980 | Canola | nucleus | 10.86 | 23.95 |
| CDY33381 | Canola | cytosol, extracellular | 5.73 | 23.22 |
| CDY36590 | Canola | cytosol | 4.89 | 21.84 |
| Bra026105.1-P | Field mustard | cytosol | 8.49 | 10.54 |
Protein Annotations
| Gene3D:1.10.246.20 | EntrezGene:100383729 | MapMan:15.3.3.3.5 | ProteinID:AQK51530.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003712 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | UniProt:K7UT64 | InterPro:KIX_dom_sf | InterPro:MED15_KIX | PFAM:PF16987 | PANTHER:PTHR33137 |
| PANTHER:PTHR33137:SF4 | SUPFAM:SSF47040 | UniParc:UPI0002212A3E | EnsemblPlantsGene:Zm00001d049894 | EnsemblPlants:Zm00001d049894_P011 | EnsemblPlants:Zm00001d049894_T011 |
| SEG:seg | : | : | : | : | : |
Description
Mediator of RNA polymerase II transcription subunit 15a
Coordinates
chr4:+:51237428..51281194
Molecular Weight (calculated)
143815.0 Da
IEP (calculated)
9.746
GRAVY (calculated)
-0.773
Length
1308 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDSAANWRST QGTDPAAGGV DPNAAAPAGS DWRTQLQPEA RHRIVNKIME TLKKHLPVSV PEGLTELHKI AVRFEEKIYT AATSQSDYLR KISLKMLSME
0101: SQTKTQQNPG NVQVIPNQNP PGPAPGLPPQ VSNPAQSSAI PLISQQQTRQ SNASTSVQGS LPSLGQNSSS VSQASTLHNM SVMPQNTMNN GLAQGTPQDM
0201: YAAQRQMAGR QQQQQQQQAH NQLIYQQQKY LNQKLQQNSL MPSHIQQQQP LLQSTQMQSS QQPMMQMSSG LQPGQTAIPQ TQSMTMHSAT QSGIQQNPLN
0301: SVQQSVQPLL HQPTQSVVRQ QQHPQSMHQQ SSLQQTQPTQ QPNIPLQQQQ PQLMNQQSNL QQNQLMNQQS GVVETQQQQR LPVQSNNLLN MQQTQQMMNQ
0401: QSMSLHQPQQ LANQGNMSSL HQQQHQQNQQ QQQLLGTGPN ARMHMLQQQK VIQQPQQQQH AQQTSMGLIQ PQSQQNQLQQ PQQHMMSQFQ SQPNQMQQQL
0501: GMQQRLQTSA GMLLQQNNID QKQYVQAQRG LQEAPSTSVD STAQTGHPGI GDLQEELYQM IKSLKDQYFV ELNELYNKVS IKIQQIDNQM PAQKSAEQYE
0601: KMKGFKGMLE RTLHFLQVNK SNIHPGLREK IPIYERQILS ILSSQRRKPV QAPGQQTFQQ SSGQAPSSNI SQQLQTSQGL QQHDSHTSQM PQASLPSMNT
0701: GVQTSGAPAP QGTNFGVPTT QQNVTNAPQA GSNLENAQGN NFNHVQHGSM GAALQQERTG PMQGALNAQQ QSSSNMISNN AMSTMQTNNN ANANSLQQLK
0801: QQRQEHQMMQ SQQMKQRQQM MQQIQQKQTL QPQLPIQQLK KQQQQGQMQF PQLHSGNDVN ELKVRQGAAI KSGMYQQLSQ RNYYQQIKQG GVFPISSPQT
0901: LQTSSPQISH HSPQVDQHSL LQSQVKTGTP LHSANSPFVP SPSPPVAPSP MPMDSDKPLS NLSSVTSAGQ AGHQQTSLAP QTQSIAVNTP GISASPLLAE
1001: FTSADGSPAN VPTQVPAKSS AAERPLDRLL KALRTTQRES LSAAVSDIGS VVSMIDRIAG SAPGNGSRAA VGEDLVAMTK CRLQARNFIT HDGSGASKKM
1101: KRDTSAMPLN VSSAGSVNDS LKQSYGVGTP ELQSTATSRV KWQRAEVNHA LMEEIQEINQ QLIDTELHVS EDDAESFTTS EGGKGTVIRC TFTAVAVCPS
1201: LKSVFASAQM SPILPLRLLV PASYPKCSPV LLDKFPDEQC RNSDDLSTKA KTKFSVLLRG LAEPMSLREI ARTWDACARK VITEYAQQTG GGSFSSSYGC
1301: WESCVGAC
0101: SQTKTQQNPG NVQVIPNQNP PGPAPGLPPQ VSNPAQSSAI PLISQQQTRQ SNASTSVQGS LPSLGQNSSS VSQASTLHNM SVMPQNTMNN GLAQGTPQDM
0201: YAAQRQMAGR QQQQQQQQAH NQLIYQQQKY LNQKLQQNSL MPSHIQQQQP LLQSTQMQSS QQPMMQMSSG LQPGQTAIPQ TQSMTMHSAT QSGIQQNPLN
0301: SVQQSVQPLL HQPTQSVVRQ QQHPQSMHQQ SSLQQTQPTQ QPNIPLQQQQ PQLMNQQSNL QQNQLMNQQS GVVETQQQQR LPVQSNNLLN MQQTQQMMNQ
0401: QSMSLHQPQQ LANQGNMSSL HQQQHQQNQQ QQQLLGTGPN ARMHMLQQQK VIQQPQQQQH AQQTSMGLIQ PQSQQNQLQQ PQQHMMSQFQ SQPNQMQQQL
0501: GMQQRLQTSA GMLLQQNNID QKQYVQAQRG LQEAPSTSVD STAQTGHPGI GDLQEELYQM IKSLKDQYFV ELNELYNKVS IKIQQIDNQM PAQKSAEQYE
0601: KMKGFKGMLE RTLHFLQVNK SNIHPGLREK IPIYERQILS ILSSQRRKPV QAPGQQTFQQ SSGQAPSSNI SQQLQTSQGL QQHDSHTSQM PQASLPSMNT
0701: GVQTSGAPAP QGTNFGVPTT QQNVTNAPQA GSNLENAQGN NFNHVQHGSM GAALQQERTG PMQGALNAQQ QSSSNMISNN AMSTMQTNNN ANANSLQQLK
0801: QQRQEHQMMQ SQQMKQRQQM MQQIQQKQTL QPQLPIQQLK KQQQQGQMQF PQLHSGNDVN ELKVRQGAAI KSGMYQQLSQ RNYYQQIKQG GVFPISSPQT
0901: LQTSSPQISH HSPQVDQHSL LQSQVKTGTP LHSANSPFVP SPSPPVAPSP MPMDSDKPLS NLSSVTSAGQ AGHQQTSLAP QTQSIAVNTP GISASPLLAE
1001: FTSADGSPAN VPTQVPAKSS AAERPLDRLL KALRTTQRES LSAAVSDIGS VVSMIDRIAG SAPGNGSRAA VGEDLVAMTK CRLQARNFIT HDGSGASKKM
1101: KRDTSAMPLN VSSAGSVNDS LKQSYGVGTP ELQSTATSRV KWQRAEVNHA LMEEIQEINQ QLIDTELHVS EDDAESFTTS EGGKGTVIRC TFTAVAVCPS
1201: LKSVFASAQM SPILPLRLLV PASYPKCSPV LLDKFPDEQC RNSDDLSTKA KTKFSVLLRG LAEPMSLREI ARTWDACARK VITEYAQQTG GGSFSSSYGC
1301: WESCVGAC
0001: MDNNNWRPSL PNGEPAMDTG DWRTQLPPDS RQKIVNKIME TLKKHLPFSG PEGINELRRI AARFEEKIFS GALNQTDYLR KISMKMLTME TKSQNAAGSS
0101: AAIPAANNGT SIDSIPTNQG QLLPGSLSTN QSQAPQPLLS QTMQNNTASG MTGSTALPSS MPPVSSITNN NTTSVVNQNA NMQNVAGMLQ DSSGQHGLSS
0201: NMFSGPQRQM LGRPHAMSSQ QQQQPYLYQQ QLQQQLLKQN FQSGNVPNPN SLLPSHIQQQ QQNVLQPNQL HSSQQPGVPT SATQPSTVNS APLQGLHTNQ
0301: QSSPQLSSQQ TTQSMLRQHQ SSMLRQHPQS QQASGIHQQQ SSLPQQSISP LQQQPTQLMR QQAANSSGIQ QKQMMGQHVV GDMQQQHQQR LLNQQNNVMN
0401: IQQQQSQQQP LQQPQQQQKQ QPPAQQQLMS QQNSLQATHQ NPLGTQSNVA GLQQPQQQML NSQVGNSSLQ NNQHSVHMLS QPTVGLQRTH QAGHGLYSSQ
0501: GQQSQNQPSQ QQMMPQLQSH HQQLGLQQQP NLLQQDVQQR LQASGQVTGS LLPPQNVVDQ QRQLYQSQRT LPEMPSSSLD STAQTESANG GDWQEEVYQK
0601: IKSMKETYLP DLNEIYQRVA AKLQQDSMPQ QQRSDQLEKL RQFKTMLERM IQFLSVSKSN IMPALKDKVA YYEKQIIGFL NMHRPRKPVQ QGQLPQSQMQ
0701: PMQQPQSQTV QDQSHDNQTN PQMQSMSMQG AGPRAQQSSM TNMQSNVLSS RPGVSAPQQN IPSSIPASSL ESGQGNTLNN GQQVAMGSMQ QNTSQLVNNS
0801: SASAQSGLST LQSNVNQPQL SSSLLQHQHL KQQQDQQMQL KQQFQQRQMQ QQQLQARQQQ QQQQLQARQQ AAQLQQMNDM NDLTSRQGMN VSRGMFQQHS
0901: MQGQRANYPL QQLKPGAVSS PQLLQGASPQ MSQHLSPQVD QKNTVNKMGT PLQPANSPFV VPSPSSTPLA PSPMQVDSEK PGSSSLSMGN IARQQATGMQ
1001: GVVQSLAIGT PGISASPLLQ EFTSPDGNIL NSSTITSGKP SATELPIERL IRAVKSISPQ ALSSAVSDIG SVVSMVDRIA GSAPGNGSRA SVGEDLVAMT
1101: KCRLQARNFM TQEGMMATKK MKRHTTAMPL SVASLGGSVG DNYKQFAGSE TSDLESTATS DGKKARTETE HALLEEIKEI NQRLIDTVVE ISDDEDAADP
1201: SEVAISSIGC EGTTVRFSFI AVSLSPALKA HLSSTQMSPI QPLRLLVPCS YPNGSPSLLD KLPVETSKEN EDLSSKAMAR FNILLRSLSQ PMSLKDIAKT
1301: WDACARAVIC EYAQQFGGGT FSSKYGTWEK YVAAS
0101: AAIPAANNGT SIDSIPTNQG QLLPGSLSTN QSQAPQPLLS QTMQNNTASG MTGSTALPSS MPPVSSITNN NTTSVVNQNA NMQNVAGMLQ DSSGQHGLSS
0201: NMFSGPQRQM LGRPHAMSSQ QQQQPYLYQQ QLQQQLLKQN FQSGNVPNPN SLLPSHIQQQ QQNVLQPNQL HSSQQPGVPT SATQPSTVNS APLQGLHTNQ
0301: QSSPQLSSQQ TTQSMLRQHQ SSMLRQHPQS QQASGIHQQQ SSLPQQSISP LQQQPTQLMR QQAANSSGIQ QKQMMGQHVV GDMQQQHQQR LLNQQNNVMN
0401: IQQQQSQQQP LQQPQQQQKQ QPPAQQQLMS QQNSLQATHQ NPLGTQSNVA GLQQPQQQML NSQVGNSSLQ NNQHSVHMLS QPTVGLQRTH QAGHGLYSSQ
0501: GQQSQNQPSQ QQMMPQLQSH HQQLGLQQQP NLLQQDVQQR LQASGQVTGS LLPPQNVVDQ QRQLYQSQRT LPEMPSSSLD STAQTESANG GDWQEEVYQK
0601: IKSMKETYLP DLNEIYQRVA AKLQQDSMPQ QQRSDQLEKL RQFKTMLERM IQFLSVSKSN IMPALKDKVA YYEKQIIGFL NMHRPRKPVQ QGQLPQSQMQ
0701: PMQQPQSQTV QDQSHDNQTN PQMQSMSMQG AGPRAQQSSM TNMQSNVLSS RPGVSAPQQN IPSSIPASSL ESGQGNTLNN GQQVAMGSMQ QNTSQLVNNS
0801: SASAQSGLST LQSNVNQPQL SSSLLQHQHL KQQQDQQMQL KQQFQQRQMQ QQQLQARQQQ QQQQLQARQQ AAQLQQMNDM NDLTSRQGMN VSRGMFQQHS
0901: MQGQRANYPL QQLKPGAVSS PQLLQGASPQ MSQHLSPQVD QKNTVNKMGT PLQPANSPFV VPSPSSTPLA PSPMQVDSEK PGSSSLSMGN IARQQATGMQ
1001: GVVQSLAIGT PGISASPLLQ EFTSPDGNIL NSSTITSGKP SATELPIERL IRAVKSISPQ ALSSAVSDIG SVVSMVDRIA GSAPGNGSRA SVGEDLVAMT
1101: KCRLQARNFM TQEGMMATKK MKRHTTAMPL SVASLGGSVG DNYKQFAGSE TSDLESTATS DGKKARTETE HALLEEIKEI NQRLIDTVVE ISDDEDAADP
1201: SEVAISSIGC EGTTVRFSFI AVSLSPALKA HLSSTQMSPI QPLRLLVPCS YPNGSPSLLD KLPVETSKEN EDLSSKAMAR FNILLRSLSQ PMSLKDIAKT
1301: WDACARAVIC EYAQQFGGGT FSSKYGTWEK YVAAS
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Oth /.../aryotes - 38082 (source: NCBI BLink). [Source:TAIR;Acc:AT1G15780]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.