CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86356	Canola	nucleus	86.01	84.0
CDY19981	Canola	cytosol	13.56	71.43
CDY00086	Canola	nucleus	29.72	63.43
CDY19982	Canola	nucleus	37.64	56.15
CDY35787	Canola	nucleus	54.12	56.07
CDY66823	Canola	cytosol, nucleus	53.15	54.57
CDY00085	Canola	nucleus	50.76	54.42
CDY19980	Canola	nucleus	30.59	47.55
AT2G10440.1	Thale cress	nucleus	48.16	47.49
CDY33379	Canola	cytosol	2.49	28.05
CDX81731	Canola	plastid	25.49	27.91
CDY53314	Canola	mitochondrion, nucleus	25.6	27.73
CDY33382	Canola	nucleus	9.76	25.14
TraesCS1A01G346100.1	Wheat	nucleus	3.15	23.77
TraesCS1D01G348800.1	Wheat	nucleus	3.15	23.58
TraesCS1B01G359700.1	Wheat	cytosol, mitochondrion, nucleus	3.15	23.2
HORVU5Hr1G125120.1	Barley	cytosol	6.18	22.8
CDY53315	Canola	nucleus	5.53	22.77
TraesCS7D01G546200.1	Wheat	nucleus	8.89	22.71
TraesCS5D01G551100.1	Wheat	nucleus	10.52	22.61
CDY35039	Canola	cytosol	3.36	22.46
CDY36587	Canola	nucleus	28.96	22.38
TraesCS4A01G315600.1	Wheat	nucleus	11.61	22.15
HORVU7Hr1G118370.1	Barley	nucleus	28.63	21.59
TraesCS7D01G526100.1	Wheat	nucleus	30.04	21.29
CDX83970	Canola	mitochondrion	27.55	21.27
CDY61379	Canola	nucleus	29.83	21.14
TraesCS7A01G540000.1	Wheat	nucleus	29.72	21.04
TraesCS7B01G177500.1	Wheat	nucleus	29.93	20.99
HORVU7Hr1G060970.1	Barley	nucleus	29.83	20.94
TraesCS7A01G283500.3	Wheat	nucleus	29.61	20.89
TraesCS7B01G460900.1	Wheat	nucleus	29.5	20.87
TraesCS7D01G281700.2	Wheat	nucleus	29.61	20.79
TraesCS7B01G495400.1	Wheat	cytosol	9.11	20.79
EES14038	Sorghum	nucleus	29.39	20.62
CDX81732	Canola	nucleus	5.42	20.58
Zm00001d049894_P011	Maize	nucleus	28.74	20.26
Zm00001d031863_P013	Maize	nucleus	28.74	20.26
TraesCS1D01G411400.1	Wheat	nucleus	13.34	20.23
TraesCS1B01G433100.1	Wheat	nucleus	13.34	20.23
Os08t0564800-01	Rice	extracellular	28.85	20.15
TraesCS1A01G403500.2	Wheat	nucleus	13.02	19.87
OQU80675	Sorghum	nucleus	9.11	19.76
TraesCS7B01G493100.1	Wheat	nucleus	7.48	18.6
TraesCSU01G036900.1	Wheat	cytosol	4.56	18.5
TraesCS2B01G599400.1	Wheat	cytosol	4.45	18.22
TraesCS2D01G594100.1	Wheat	cytosol	4.56	18.1
KXG25352	Sorghum	nucleus	3.04	17.95
HORVU2Hr1G123080.2	Barley	cytosol	4.45	17.75
Os08t0523600-01	Rice	cytosol, nucleus	1.84	17.71
TraesCS2B01G598700.1	Wheat	cytosol	4.45	17.67
HORVU5Hr1G106220.2	Barley	cytosol, nucleus	10.52	17.45
GSMUA_Achr8P09800_001	Banana	nucleus	2.6	17.14
VIT_08s0040g00740.t01	Wine grape	nucleus	7.38	16.71
CDY52868	Canola	cytosol	2.39	15.6
CDY61380	Canola	extracellular, vacuole	6.72	15.12
CDY36589	Canola	nucleus	15.29	11.76
CDY33381	Canola	cytosol, extracellular	3.69	10.53
CDY36595	Canola	cytosol	3.8	10.26
CDY36590	Canola	cytosol	3.04	9.56
CDY33380	Canola	cytosol	4.12	8.39
CDY36591	Canola	cytosol	4.12	7.29

Protein Annotations

EnsemblPlants:CDX85281	EnsemblPlantsGene:GSBRNA2T00142931001	Gene3D:1.10.246.20	GO:A0A078D7I9	GO:GO:0003674	GO:GO:0003712
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:KIX_dom_sf	InterPro:MED15_KIX	ncoils:Coil	PFAM:PF16987	ProteinID:CDX85281	ProteinID:CDX85281.1
SEG:seg	SUPFAM:SSF47040	UniParc:UPI0004EE713C	MapMan:15.3.3.3.5	:	:

Description

BnaC07g25920D

Coordinates

chrLK031841:-:791690..797021

Molecular Weight (calculated)

103734.0 Da

IEP (calculated)

9.555

GRAVY (calculated)

-0.877

Length

922 amino acids

Sequence
(BLAST)

001: MEGNSNWKPN QPGGDSLASN NANDWRSQLP PDMRKKLILA IVEKVKIYCP TRHPNDIKNT AFSFEGKIYA AATDKDDYMR TIKGNIMNFD RKFRMQSGSS
101: VNGTNTPAPA AQALNQTPTS QQWLPQNNNN IQRNLNIFES SGLPNQSFPQ PSALSSLPPS GQQNSQFLSR QNQFPTQRVH SSHHQQQMHV PSQEQKRQER
201: EQLTSHLMNG QDTQQNHLTS QQNNGEQQRA FRVFSSQQNN IASFQERPQQ NNNIKNLHQQ QRLYSHSNNA SALPSQQQQH NVHTQNRISQ QPLDDTQRFQ
301: ASGSLLQTQQ NQPYQLQRTS PANTSTSQDS TGQTVNASGG GDWQEETYQK IKALKEKYIL VVSALFQKLS NKLREIDAHP QQKIQHGHME KLRATKATLK
401: LVLVFLNVPR NAITESHREK FSIYEEQLLR FVKHNQTVTR RPMQQQQQVH LPPPQTHQTP LQSQSGHQVF HVPQSSTVSN LTTSHTAMPH SSQTRPTMEP
501: KEETNIMTLP ASNPQPSMFQ QKQFHHLPMQ QRQQQQPQTN HQQLHMPKIE MNDVRMSQRV NNKAGLRQRH LAKPLSSPQL VDQQILPPTF NKNGTSSQSG
601: GSPFVAPSFA PSPNLGDPEN PISVESPSSH DYQLQPAAQE QPQEPHAERP IDRLIKAFQS SSPESLAQSI SEMSSVISLT DRLAGSVQSI GGSRARVPQD
701: LSERTRLRLQ RGETNPTNKR FKRSITTQPI DITSETESYK QFSSLESEVD STASSGSKAN KIEPGLALLQ EIMEVNGRLV ETMVSICSED VGPSEVTTGT
801: IVMCSYAPVA LCDTFQALYK SGHVSQIQPL RLLVPDNYPH SPILIENIPF DSSVNKHEDL SARTRSRFGL SMKEFSEPMS LTEIAQAWDA CARATMAEYA
901: ERHGEGTFSS KYGHWEPVLR AS

Best Arabidopsis Sequence Match ( AT2G10440.1 )
(BLAST)

001: MEGNTNWKPN EQGGNRDAAN NRIDWRSQHE PELRQKVLSK IVEKFKEKFH AHEEYKINDI ASKFEENFYS IATDKTTTSQ QWLQQNTQSN LCVICFAKSG
101: PYNRSRFSKT DTCSVTAAAT SSAKFVETTY STAFSSIKLT KHSITDQKSV FDTTEQKRQE QEQLINQLTN LPTSRPNNRD QQGAFQVSSS QQNNNVTLHA
201: MSQQKNNLQS MTRGQQVGQS QPMMSQQYRQ QYPMQQDPQN RNLQKHLDFV QNNTNQFQAA SSLRQTQNIT DQQNQPQQLE RANPSILIMN IIVASQDSTG
301: KTVNVNAGNW QEETYQKIKK LKEMCLPVLS LMHQRVAEKL RETESLPPQP MQAQWIEKLK AGKLSMEHLM FFLNVHRSSV SEKHRDKFSQ YEYHILKFTK
401: SQTMVLRPTQ QQQGQFPPSQ TAMQTQSPQV HVSQSLYKEQ RRSRLMPSSQ NEASSLLQIR PKLDPRDENI IMASSGNVML PSVKQNPRAV NTNISSVQSL
501: QKQKRFHHRQ MQQQQPQQGN HQHQMQTNEM NDVRMRERVN IKARLLEQQV SSSQRQVPKQ ESNVSSSQIQ NHSSPQLVDQ HILPATINKT GTPLNSSGSA
601: FVAPAPSPVP GDSEMPISVE SPVSGVDEIN STLDSSSKLG TQETPLLFVP PPEPITERPI DRLIKAFQAA SPKSLAESVS EISSVISMVD MIGGSFPSSG
701: GSRAGLGEDL SERTRNFTTH EETNLSKRMK RSINIVPPDM SSQIDSYEQL SSLESEVVST TSSGLKVNNI APGYALLQEI KETNGRLVET VVEICDEDSL
801: GTIVTCTYAP VALSATFKDH YKSGKIIFYV SKCLMQAQIQ PLRLLFPMDY PYSSPIVLEE ISFDTSVHKY EDLSARTRSR FSLSMKEFSE PGFSKGIAQT
901: WNDCARATMV EYAERHGGGT FSSKYGAWET VLRAS

Arabidopsis Description

MED15CProbable mediator of RNA polymerase II transcription subunit 15c [Source:UniProtKB/Swiss-Prot;Acc:Q9SHV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.