Factsheet for TraesCS1A01G346100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G348800.1	Wheat	nucleus	91.8	91.06
TraesCS1B01G359700.1	Wheat	cytosol, mitochondrion, nucleus	86.07	84.0
Os08t0523600-01	Rice	cytosol, nucleus	37.7	47.92
GSMUA_Achr8P09790_001	Banana	cytosol	31.15	47.5
VIT_13s0067g02230.t01	Wine grape	mitochondrion	24.59	32.97
KXG25352	Sorghum	nucleus	40.98	32.05
CDY52868	Canola	cytosol	36.07	31.21
Bra026748.1-P	Field mustard	cytosol	36.07	31.21
OQU80675	Sorghum	nucleus	55.74	16.0
TraesCS4A01G315600.1	Wheat	nucleus	63.11	15.94
TraesCS1A01G403500.2	Wheat	nucleus	67.21	13.58
HORVU5Hr1G106220.2	Barley	cytosol, nucleus	61.48	13.49
CDY33381	Canola	cytosol, extracellular	31.97	12.07
CDY36590	Canola	cytosol	23.77	9.9
KRH52764	Soybean	nucleus	19.67	9.84
TraesCS7A01G283500.3	Wheat	nucleus	77.05	7.19
TraesCS7A01G540000.1	Wheat	nucleus	70.49	6.61
Zm00001d031863_P013	Maize	nucleus	66.39	6.19
EES14038	Sorghum	nucleus	65.57	6.09
Zm00001d049894_P011	Maize	nucleus	64.75	6.04
Os08t0564800-01	Rice	extracellular	64.75	5.98
CDY33382	Canola	nucleus	17.21	5.87
GSMUA_Achr11P...	Banana	nucleus	54.92	5.25
GSMUA_Achr8P09780_001	Banana	nucleus	52.46	4.74
Bra036204.1-P	Field mustard	nucleus	23.77	4.69
Bra026105.1-P	Field mustard	cytosol	39.34	4.56
CDY19982	Canola	nucleus	22.95	4.53
CDY19980	Canola	nucleus	19.67	4.05
CDY00085	Canola	nucleus	27.05	3.84
KRH20610	Soybean	cytosol	21.31	3.7
CDY66823	Canola	cytosol, nucleus	26.23	3.56
Bra040585.1-P	Field mustard	nucleus	26.23	3.56
CDY35787	Canola	nucleus	25.41	3.48
CDX86356	Canola	nucleus	25.41	3.28
CDX85281	Canola	nucleus	23.77	3.15
Bra025408.1-P	Field mustard	nucleus	25.41	2.94
AT2G10440.1	Thale cress	nucleus	18.85	2.46
KRH08040	Soybean	cytosol	0.82	0.97
KRH45070	Soybean	cytosol	0.82	0.97
AT1G15770.1	Thale cress	cytosol	1.64	0.68
CDX81731	Canola	plastid	1.64	0.24
PGSC0003DMT400082469	Potato	extracellular	0.0	0.0
CDY19981	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1A01G346100.1	EnsemblPlantsGene:TraesCS1A01G346100	Gene3D:1.10.246.20	GO:GO:0003674	GO:GO:0003712	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:KIX_dom_sf
InterPro:MED15_KIX	PANTHER:PTHR33137	PANTHER:PTHR33137:SF4	PFAM:PF16987	SUPFAM:SSF47040	MapMan:35.1

Description

No Description!

Coordinates

chr1A:-:532807085..532810381

Molecular Weight (calculated)

13546.9 Da

IEP (calculated)

5.188

GRAVY (calculated)

-0.774

Length

122 amino acids

Sequence
(BLAST)

001: MDADGRPTQG SDPAAAVDSP PTGAGDWRAQ LQPEARSRIV ERMMETLKTR LPVSEPEGLN DLQKIAVRFE QKIYTEATNE SDYFWKISLK MLSMESKTQQ
101: APGNAHVIPN QNNSGKVPYT VN

Best Arabidopsis Sequence Match ( AT1G15780.1 )
(BLAST)

0001: MDNNNWRPSL PNGEPAMDTG DWRTQLPPDS RQKIVNKIME TLKKHLPFSG PEGINELRRI AARFEEKIFS GALNQTDYLR KISMKMLTME TKSQNAAGSS
0101: AAIPAANNGT SIDSIPTNQG QLLPGSLSTN QSQAPQPLLS QTMQNNTASG MTGSTALPSS MPPVSSITNN NTTSVVNQNA NMQNVAGMLQ DSSGQHGLSS
0201: NMFSGPQRQM LGRPHAMSSQ QQQQPYLYQQ QLQQQLLKQN FQSGNVPNPN SLLPSHIQQQ QQNVLQPNQL HSSQQPGVPT SATQPSTVNS APLQGLHTNQ
0301: QSSPQLSSQQ TTQSMLRQHQ SSMLRQHPQS QQASGIHQQQ SSLPQQSISP LQQQPTQLMR QQAANSSGIQ QKQMMGQHVV GDMQQQHQQR LLNQQNNVMN
0401: IQQQQSQQQP LQQPQQQQKQ QPPAQQQLMS QQNSLQATHQ NPLGTQSNVA GLQQPQQQML NSQVGNSSLQ NNQHSVHMLS QPTVGLQRTH QAGHGLYSSQ
0501: GQQSQNQPSQ QQMMPQLQSH HQQLGLQQQP NLLQQDVQQR LQASGQVTGS LLPPQNVVDQ QRQLYQSQRT LPEMPSSSLD STAQTESANG GDWQEEVYQK
0601: IKSMKETYLP DLNEIYQRVA AKLQQDSMPQ QQRSDQLEKL RQFKTMLERM IQFLSVSKSN IMPALKDKVA YYEKQIIGFL NMHRPRKPVQ QGQLPQSQMQ
0701: PMQQPQSQTV QDQSHDNQTN PQMQSMSMQG AGPRAQQSSM TNMQSNVLSS RPGVSAPQQN IPSSIPASSL ESGQGNTLNN GQQVAMGSMQ QNTSQLVNNS
0801: SASAQSGLST LQSNVNQPQL SSSLLQHQHL KQQQDQQMQL KQQFQQRQMQ QQQLQARQQQ QQQQLQARQQ AAQLQQMNDM NDLTSRQGMN VSRGMFQQHS
0901: MQGQRANYPL QQLKPGAVSS PQLLQGASPQ MSQHLSPQVD QKNTVNKMGT PLQPANSPFV VPSPSSTPLA PSPMQVDSEK PGSSSLSMGN IARQQATGMQ
1001: GVVQSLAIGT PGISASPLLQ EFTSPDGNIL NSSTITSGKP SATELPIERL IRAVKSISPQ ALSSAVSDIG SVVSMVDRIA GSAPGNGSRA SVGEDLVAMT
1101: KCRLQARNFM TQEGMMATKK MKRHTTAMPL SVASLGGSVG DNYKQFAGSE TSDLESTATS DGKKARTETE HALLEEIKEI NQRLIDTVVE ISDDEDAADP
1201: SEVAISSIGC EGTTVRFSFI AVSLSPALKA HLSSTQMSPI QPLRLLVPCS YPNGSPSLLD KLPVETSKEN EDLSSKAMAR FNILLRSLSQ PMSLKDIAKT
1301: WDACARAVIC EYAQQFGGGT FSSKYGTWEK YVAAS

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Oth /.../aryotes - 38082 (source: NCBI BLink). [Source:TAIR;Acc:AT1G15780]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.