Factsheet for TraesCS4A01G315600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G551100.1	Wheat	nucleus	72.26	81.35
HORVU5Hr1G125120.1	Barley	cytosol	32.92	63.6
TraesCS1A01G346100.1	Wheat	nucleus	15.94	63.11
TraesCS1A01G403500.2	Wheat	nucleus	71.43	57.12
GSMUA_Achr8P09790_001	Banana	cytosol	7.25	43.75
VIT_13s0067g02230.t01	Wine grape	mitochondrion	6.83	36.26
CDY52868	Canola	cytosol	9.94	34.04
Bra026748.1-P	Field mustard	cytosol	9.94	34.04
KRH45070	Soybean	cytosol	7.04	33.01
KRH08040	Soybean	cytosol	7.04	33.01
TraesCS7A01G283500.3	Wheat	nucleus	81.37	30.07
KRH52764	Soybean	nucleus	14.49	28.69
TraesCS7A01G540000.1	Wheat	nucleus	76.19	28.26
CDY33382	Canola	nucleus	17.81	24.02
GSMUA_Achr11P...	Banana	nucleus	49.48	18.72
GSMUA_Achr8P09780_001	Banana	nucleus	48.45	17.35
CDX81731	Canola	plastid	27.33	15.68
CDY33381	Canola	cytosol, extracellular	9.73	14.55
CDY35787	Canola	nucleus	24.02	13.03
CDY36590	Canola	cytosol	7.87	12.97
CDY19980	Canola	nucleus	15.53	12.65
CDY66823	Canola	cytosol, nucleus	23.19	12.47
Bra040585.1-P	Field mustard	nucleus	23.19	12.46
CDX85281	Canola	nucleus	22.15	11.61
Bra036204.1-P	Field mustard	nucleus	14.08	11.0
CDY19982	Canola	nucleus	13.87	10.84
Bra025408.1-P	Field mustard	nucleus	22.98	10.53
CDX86356	Canola	nucleus	20.29	10.38
AT2G10440.1	Thale cress	nucleus	19.25	9.95
CDY00085	Canola	nucleus	16.36	9.19
KRH20610	Soybean	cytosol	12.22	8.4
AT1G15770.1	Thale cress	cytosol	4.35	7.17
Bra026105.1-P	Field mustard	cytosol	11.8	5.41
CDY19981	Canola	cytosol	0.0	0.0
PGSC0003DMT400082469	Potato	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS4A01G315600.1	EnsemblPlantsGene:TraesCS4A01G315600	Gene3D:1.10.246.20	GO:GO:0003674	GO:GO:0003712	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:KIX_dom_sf
InterPro:MED15_KIX	PFAM:PF16987	SEG:seg	SUPFAM:SSF47040	MapMan:35.1	:

Description

No Description!

Coordinates

chr4A:-:605663621..605667985

Molecular Weight (calculated)

55271.8 Da

IEP (calculated)

6.895

GRAVY (calculated)

-0.851

Length

483 amino acids

Sequence
(BLAST)

001: MDANWRPTQG PDPAAAAAVG DWRAQLQPEA RSRVVNKILE TLRKILPVSV PDELIELQEI ARQFEDKIYT EATNQSDYVR KISLKMVSME TSRQLAPGNA
101: QVIPNQNNSA PALPPQGGNQ AQTSAIPLMS EQQSQQNQLN PVQQSVQSLL QQPQQTVGRQ QRQAHPSIHQ QPSLQSQQLN ILLQQQQQQQ QLMGHQPNLQ
201: QNGAVEMQEQ QRLPVQSNNL LNVQQTQQML NQQYMPLHQP HQLGSQAYMV SLQHQQLLGT VPNVSNMHRM HMLHTEAQQP QEQQHAQQPP MQPQSQHNQL
301: QQSQQHLMSQ FQSQPNQLQH QSGMQPQSSM QRRLQASGGM LLQQNNMDPI QAQRGLQEVS SSTSADSTAQ TGDEDEDADY WQEEIYQMVK IMKDQYFADL
401: SELFNKVCVK LQHVESMIRP PIPSEQYDRM KSFKTMLERI LQMLQISKSI IQPAMRDRVP QYEKQIITIL NCLRKPVQPQ VQQ

Best Arabidopsis Sequence Match ( AT1G15780.2 )
(BLAST)

0001: MDNNNWRPSL PNGEPAMDTG DWRTQLPPDS RQKIVNKIME TLKKHLPFSG PEGINELRRI AARFEEKIFS GALNQTDYLR KISMKMLTME TKSQNAAGSS
0101: AAIPAANNGT SIDSIPTNQG QLLPGSLSTN QSQAPQPLLS QTMQNNTASG MTGSTALPSS MPPVSSITNN NTTSVVNQNA NMQNVAGMLQ DSSGQHGLSS
0201: NMFSGPQRQM LGRPHAMSSQ QQQQPYLYQQ QLQQQLLKQN FQSGNVPNPN SLLPSHIQQQ QQNVLQPNQL HSSQQPGVPT SATQPSTVNS APLQGLHTNQ
0301: QSSPQLSSQQ TTQSMLRQHQ SSMLRQHPQS QQASGIHQQQ SSLPQQSISP LQQQPTQLMR QQAANSSGIQ QKQMMGQHVV GDMQQQHQQR LLNQQNNVMN
0401: IQQQQSQQQP LQQPQQQQKQ QPPAQQQLMS QQNSLQATHQ NPLGTQSNVA GLQQPQQQML NSQVGNSSLQ NNQHSVHMLS QPTVGLQRTH QAGHGLYSSQ
0501: GQQSQNQPSQ QQMMPQLQSH HQQLGLQQQP NLLQQDVQQR LQASGQVTGS LLPPQNVVDQ QRQLYQSQRT LPEMPSSSLD STAQTESANG GDWQEEVYQK
0601: IKSMKETYLP DLNEIYQRVA AKLQQDSMPQ QQRSDQLEKL RQFKTMLERM IQFLSVSKSN IMPALKDKVA YYEKQIIGFL NMHRPRKPVQ QGQLPQSQMQ
0701: PMQQPQSQTV QDQSHDNQTN PQMQSMSMQG AGPRAQQSSM TNMQSNVLSS RPGVSAPQQN IPSSIPASSL ESGQGNTLNN GQQVAMGSMQ QNTSQLVNNS
0801: SASAQSGLST LQSNVNQPQL SSSLLQHQHL KQQQDQQMQL KQQFQQRQMQ QQQLQARQQQ QQQQLQARQQ AAQLQQMNDM NDLTSRQGMN VSRGMFQQHS
0901: MQGQRANYPL QQLKPGAVSS PQLLQGASPQ MSQHLSPQVD QKNTVNKMGT PLQPANSPFV VPSPSSTPLA PSPMQVDSEK PGSSSLSMGN IARQQATGMQ
1001: GVVQSLAIGT PGISASPLLQ EFTSPDGNIL NSSTITSGKP SATELPIERL IRAVKSISPQ ALSSAVSDIG SVVSMVDRIA GSAPGNGSRA SVGEDLVAMT
1101: KCRLQARNFM TQEGMMATKK MKRHTTAMPL SVASLGGSVG DNYKQFAGSE TSDLESTATS DGKKARTETE HALLEEIKEI NQRLIDTVVE ISDDEDAADP
1201: SEVAISSIGC EGTTVRFSFI AVSLSPALKA HLSSTQMSPI QPLRLLVPCS YPNGSPSLLD KLPVETRYKQ ILQSQVNRTI DFPYRVEQTS TIQLKSSQES
1301: STRNPLLETA LSSYRNTVWF LEQQRKRGPV VQSYGKVQHI AKKFVTADVA QRHSQDMGRL CSGSDL

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Oth /.../aryotes - 38082 (source: NCBI BLink). [Source:TAIR;Acc:AT1G15780]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.