Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86356 | Canola | nucleus | 84.44 | 94.28 |
| Bra036204.1-P | Field mustard | nucleus | 36.81 | 62.78 |
| Bra040585.1-P | Field mustard | nucleus | 52.85 | 61.96 |
| AT2G10440.1 | Thale cress | nucleus | 43.45 | 48.98 |
| Bra026749.1-P | Field mustard | nucleus | 30.83 | 25.94 |
| TraesCS1A01G346100.1 | Wheat | nucleus | 2.94 | 25.41 |
| TraesCS7D01G546200.1 | Wheat | nucleus | 8.63 | 25.21 |
| TraesCS1D01G348800.1 | Wheat | nucleus | 2.94 | 25.2 |
| Bra026108.1-P | Field mustard | nucleus | 26.57 | 24.91 |
| TraesCS1B01G359700.1 | Wheat | cytosol, mitochondrion, nucleus | 2.94 | 24.8 |
| TraesCS7B01G495400.1 | Wheat | cytosol | 9.39 | 24.5 |
| Bra016651.1-P | Field mustard | endoplasmic reticulum, vacuole | 30.08 | 23.62 |
| TraesCS7D01G526100.1 | Wheat | nucleus | 29.13 | 23.6 |
| TraesCS7A01G540000.1 | Wheat | nucleus | 28.84 | 23.35 |
| TraesCS5D01G551100.1 | Wheat | nucleus | 9.49 | 23.31 |
| HORVU5Hr1G125120.1 | Barley | cytosol | 5.5 | 23.2 |
| TraesCS7B01G460900.1 | Wheat | nucleus | 28.65 | 23.18 |
| TraesCS7B01G177500.1 | Wheat | nucleus | 28.84 | 23.12 |
| HORVU7Hr1G060970.1 | Barley | nucleus | 28.75 | 23.08 |
| HORVU7Hr1G118370.1 | Barley | nucleus | 26.76 | 23.06 |
| TraesCS7A01G283500.3 | Wheat | nucleus | 28.56 | 23.03 |
| TraesCS4A01G315600.1 | Wheat | nucleus | 10.53 | 22.98 |
| TraesCS7D01G281700.2 | Wheat | nucleus | 28.56 | 22.92 |
| EES14038 | Sorghum | nucleus | 28.46 | 22.83 |
| Zm00001d031863_P013 | Maize | nucleus | 27.99 | 22.55 |
| TraesCS1D01G411400.1 | Wheat | nucleus | 13.0 | 22.53 |
| TraesCS1B01G433100.1 | Wheat | nucleus | 13.0 | 22.53 |
| TraesCS1A01G403500.2 | Wheat | nucleus | 12.9 | 22.52 |
| Zm00001d049894_P011 | Maize | nucleus | 27.8 | 22.4 |
| TraesCS7B01G493100.1 | Wheat | nucleus | 7.87 | 22.37 |
| Os08t0564800-01 | Rice | extracellular | 27.89 | 22.27 |
| OQU80675 | Sorghum | nucleus | 8.54 | 21.18 |
| TraesCSU01G036900.1 | Wheat | cytosol | 4.55 | 21.15 |
| TraesCS2B01G599400.1 | Wheat | cytosol | 4.46 | 20.89 |
| TraesCS2D01G594100.1 | Wheat | cytosol | 4.55 | 20.69 |
| HORVU5Hr1G106220.2 | Barley | cytosol, nucleus | 10.72 | 20.32 |
| TraesCS2B01G598700.1 | Wheat | cytosol | 4.46 | 20.26 |
| Bra026102.1-P | Field mustard | cytosol | 3.04 | 20.13 |
| GSMUA_Achr8P09800_001 | Banana | nucleus | 2.66 | 20.0 |
| HORVU2Hr1G123080.2 | Barley | cytosol | 4.36 | 19.91 |
| VIT_08s0040g00740.t01 | Wine grape | nucleus | 7.5 | 19.41 |
| KXG25352 | Sorghum | nucleus | 2.75 | 18.59 |
| Os08t0523600-01 | Rice | cytosol, nucleus | 1.61 | 17.71 |
| Bra026748.1-P | Field mustard | cytosol | 2.28 | 17.02 |
| Bra028029.1-P | Field mustard | cytosol | 3.13 | 15.35 |
| Bra026106.1-P | Field mustard | nucleus | 16.79 | 14.51 |
| Bra026104.1-P | Field mustard | mitochondrion | 2.37 | 12.56 |
| Bra026103.1-P | Field mustard | cytosol | 3.7 | 11.44 |
| Bra026105.1-P | Field mustard | cytosol | 5.03 | 5.03 |
Protein Annotations
| EnsemblPlants:Bra025408.1 | EnsemblPlants:Bra025408.1-P | EnsemblPlantsGene:Bra025408 | Gene3D:1.10.246.20 | GO:GO:0003674 | GO:GO:0003712 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:KIX_dom_sf | InterPro:MED15_KIX | PFAM:PF16987 | SEG:seg | SUPFAM:SSF47040 | UniParc:UPI000253FA6D |
| UniProt:M4E9F2 | MapMan:15.3.3.3.5 | : | : | : | : |
Description
AT2G10440 (E=2e-154) | unknown protein
Coordinates
chrA06:+:21772773..21777182
Molecular Weight (calculated)
118516.0 Da
IEP (calculated)
9.513
GRAVY (calculated)
-0.878
Length
1054 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEGNSNWKPN QQGGDSLASN NANDWRSQLA PDMRKKVILA IVEKLKIYYP TRHPNAIKNT AFSFEGKIYA AAKDKDDYMR TIKGNIMNFD RKLQSSNVQS
0101: GSSVNGTNTP APAAQALNQG QSVLTSLPYT QTPTSQQWLH QNNNNIQSNL NILESSGLPT DVSSAAQNLN IQMGEGVHSN LLPGSQRQIH GREHHLPQQP
0201: QSSNYFQNQM DQQLLKEEVQ PSYMQQQQSL LKQPIQQQLP HQTSLSNIQQ SFPQPSALSS LPNSQFLSRQ DQFPTQRVHS SHHQQQMHVP SQEQKRQERE
0301: QLISHLMNDK DTQQNHLTPQ QNNGEKQAAF RASSSQQNNI ASFQERPLQN NSIQQRLYSH SNNASALPSQ QKQYNVHGSS CLAAQGQEVG QSQTMIQQQY
0401: QPQHTMQQAQ NRILQQPLDD TQRFQASGSL LQTQQNQPYQ LQRTSPANTF TSQDSTGQTV NASGGGDWQE ETYQKIKALK EKYILVVGAL YQKLSNKLRE
0501: IDAHPQQKIQ HGHMEKLRAS KATLKLVLVF LNVSRNAITE SHREKFNIYE EQLLRFVKHN QTVTRRPMQQ QQQQQQQVHL PPSQTHQTAL QSQSGHQVFH
0601: VPQSSALSNL TTSHTAMPHS SQTRPKMEPK EETNIMTLPA SNPQPSMFQQ KQFHHLSMQQ RRQQQPQKNH QQLQMPKNEM NDVRMSQRVN NKAGLRQQNI
0701: SPNQRHLAKP LASPQLVDQQ ILPTTFNKNG TSSQSGGSPF VAPSSNLGDP ENPISVESPS SHDYQLQPAA QEHPPEPNAE RPIDRLIKAF QSSSPESLAQ
0801: SINEMSSVIS LTDRLAGCVQ SIGGSRARVP QDLSERTRLR LQRGETNPTN KRFKRSITTQ PIDITSETER YKQFSSLESE VDSTASSGSK ANKIEAGLAL
0901: LQEIMEVNRR LVETMVSICS EDVGPSEVTT GTIVMCSYAP VALCDTFQAL YKSGHVSQIQ PLRLLVPENY PHSPILIENI PFDSSVNKHE DLSARTRSRF
1001: GLSMKEFSEP MSLTEIAQAW DACARATMAE YAERHGGGTF SSKHGHWEPV LRAS
0101: GSSVNGTNTP APAAQALNQG QSVLTSLPYT QTPTSQQWLH QNNNNIQSNL NILESSGLPT DVSSAAQNLN IQMGEGVHSN LLPGSQRQIH GREHHLPQQP
0201: QSSNYFQNQM DQQLLKEEVQ PSYMQQQQSL LKQPIQQQLP HQTSLSNIQQ SFPQPSALSS LPNSQFLSRQ DQFPTQRVHS SHHQQQMHVP SQEQKRQERE
0301: QLISHLMNDK DTQQNHLTPQ QNNGEKQAAF RASSSQQNNI ASFQERPLQN NSIQQRLYSH SNNASALPSQ QKQYNVHGSS CLAAQGQEVG QSQTMIQQQY
0401: QPQHTMQQAQ NRILQQPLDD TQRFQASGSL LQTQQNQPYQ LQRTSPANTF TSQDSTGQTV NASGGGDWQE ETYQKIKALK EKYILVVGAL YQKLSNKLRE
0501: IDAHPQQKIQ HGHMEKLRAS KATLKLVLVF LNVSRNAITE SHREKFNIYE EQLLRFVKHN QTVTRRPMQQ QQQQQQQVHL PPSQTHQTAL QSQSGHQVFH
0601: VPQSSALSNL TTSHTAMPHS SQTRPKMEPK EETNIMTLPA SNPQPSMFQQ KQFHHLSMQQ RRQQQPQKNH QQLQMPKNEM NDVRMSQRVN NKAGLRQQNI
0701: SPNQRHLAKP LASPQLVDQQ ILPTTFNKNG TSSQSGGSPF VAPSSNLGDP ENPISVESPS SHDYQLQPAA QEHPPEPNAE RPIDRLIKAF QSSSPESLAQ
0801: SINEMSSVIS LTDRLAGCVQ SIGGSRARVP QDLSERTRLR LQRGETNPTN KRFKRSITTQ PIDITSETER YKQFSSLESE VDSTASSGSK ANKIEAGLAL
0901: LQEIMEVNRR LVETMVSICS EDVGPSEVTT GTIVMCSYAP VALCDTFQAL YKSGHVSQIQ PLRLLVPENY PHSPILIENI PFDSSVNKHE DLSARTRSRF
1001: GLSMKEFSEP MSLTEIAQAW DACARATMAE YAERHGGGTF SSKHGHWEPV LRAS
001: MEGNTNWKPN EQGGNRDAAN NRIDWRSQHE PELRQKVLSK IVEKFKEKFH AHEEYKINDI ASKFEENFYS IATDKTTTSQ QWLQQNTQSN LCVICFAKSG
101: PYNRSRFSKT DTCSVTAAAT SSAKFVETTY STAFSSIKLT KHSITDQKSV FDTTEQKRQE QEQLINQLTN LPTSRPNNRD QQGAFQVSSS QQNNNVTLHA
201: MSQQKNNLQS MTRGQQVGQS QPMMSQQYRQ QYPMQQDPQN RNLQKHLDFV QNNTNQFQAA SSLRQTQNIT DQQNQPQQLE RANPSILIMN IIVASQDSTG
301: KTVNVNAGNW QEETYQKIKK LKEMCLPVLS LMHQRVAEKL RETESLPPQP MQAQWIEKLK AGKLSMEHLM FFLNVHRSSV SEKHRDKFSQ YEYHILKFTK
401: SQTMVLRPTQ QQQGQFPPSQ TAMQTQSPQV HVSQSLYKEQ RRSRLMPSSQ NEASSLLQIR PKLDPRDENI IMASSGNVML PSVKQNPRAV NTNISSVQSL
501: QKQKRFHHRQ MQQQQPQQGN HQHQMQTNEM NDVRMRERVN IKARLLEQQV SSSQRQVPKQ ESNVSSSQIQ NHSSPQLVDQ HILPATINKT GTPLNSSGSA
601: FVAPAPSPVP GDSEMPISVE SPVSGVDEIN STLDSSSKLG TQETPLLFVP PPEPITERPI DRLIKAFQAA SPKSLAESVS EISSVISMVD MIGGSFPSSG
701: GSRAGLGEDL SERTRNFTTH EETNLSKRMK RSINIVPPDM SSQIDSYEQL SSLESEVVST TSSGLKVNNI APGYALLQEI KETNGRLVET VVEICDEDSL
801: GTIVTCTYAP VALSATFKDH YKSGKIIFYV SKCLMQAQIQ PLRLLFPMDY PYSSPIVLEE ISFDTSVHKY EDLSARTRSR FSLSMKEFSE PGFSKGIAQT
901: WNDCARATMV EYAERHGGGT FSSKYGAWET VLRAS
101: PYNRSRFSKT DTCSVTAAAT SSAKFVETTY STAFSSIKLT KHSITDQKSV FDTTEQKRQE QEQLINQLTN LPTSRPNNRD QQGAFQVSSS QQNNNVTLHA
201: MSQQKNNLQS MTRGQQVGQS QPMMSQQYRQ QYPMQQDPQN RNLQKHLDFV QNNTNQFQAA SSLRQTQNIT DQQNQPQQLE RANPSILIMN IIVASQDSTG
301: KTVNVNAGNW QEETYQKIKK LKEMCLPVLS LMHQRVAEKL RETESLPPQP MQAQWIEKLK AGKLSMEHLM FFLNVHRSSV SEKHRDKFSQ YEYHILKFTK
401: SQTMVLRPTQ QQQGQFPPSQ TAMQTQSPQV HVSQSLYKEQ RRSRLMPSSQ NEASSLLQIR PKLDPRDENI IMASSGNVML PSVKQNPRAV NTNISSVQSL
501: QKQKRFHHRQ MQQQQPQQGN HQHQMQTNEM NDVRMRERVN IKARLLEQQV SSSQRQVPKQ ESNVSSSQIQ NHSSPQLVDQ HILPATINKT GTPLNSSGSA
601: FVAPAPSPVP GDSEMPISVE SPVSGVDEIN STLDSSSKLG TQETPLLFVP PPEPITERPI DRLIKAFQAA SPKSLAESVS EISSVISMVD MIGGSFPSSG
701: GSRAGLGEDL SERTRNFTTH EETNLSKRMK RSINIVPPDM SSQIDSYEQL SSLESEVVST TSSGLKVNNI APGYALLQEI KETNGRLVET VVEICDEDSL
801: GTIVTCTYAP VALSATFKDH YKSGKIIFYV SKCLMQAQIQ PLRLLFPMDY PYSSPIVLEE ISFDTSVHKY EDLSARTRSR FSLSMKEFSE PGFSKGIAQT
901: WNDCARATMV EYAERHGGGT FSSKYGAWET VLRAS
Arabidopsis Description
MED15CProbable mediator of RNA polymerase II transcription subunit 15c [Source:UniProtKB/Swiss-Prot;Acc:Q9SHV7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.