Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G348800.1 | Wheat | nucleus | 87.2 | 88.62 |
| TraesCS1A01G346100.1 | Wheat | nucleus | 84.0 | 86.07 |
| Os08t0523600-01 | Rice | cytosol, nucleus | 36.8 | 47.92 |
| GSMUA_Achr8P09790_001 | Banana | cytosol | 30.4 | 47.5 |
| VIT_13s0067g02230.t01 | Wine grape | mitochondrion | 26.4 | 36.26 |
| TraesCS2B01G599400.1 | Wheat | cytosol | 58.4 | 32.44 |
| TraesCS2B01G598700.1 | Wheat | cytosol | 58.4 | 31.47 |
| KXG25352 | Sorghum | nucleus | 39.2 | 31.41 |
| CDY52868 | Canola | cytosol | 32.8 | 29.08 |
| Bra026748.1-P | Field mustard | cytosol | 32.8 | 29.08 |
| TraesCS7B01G493100.1 | Wheat | nucleus | 60.0 | 20.22 |
| TraesCS7B01G495400.1 | Wheat | cytosol | 60.0 | 18.56 |
| OQU80675 | Sorghum | nucleus | 56.0 | 16.47 |
| HORVU5Hr1G106220.2 | Barley | cytosol, nucleus | 60.8 | 13.67 |
| TraesCS1B01G433100.1 | Wheat | nucleus | 66.4 | 13.65 |
| CDY33381 | Canola | cytosol, extracellular | 31.2 | 12.07 |
| KRH52764 | Soybean | nucleus | 20.0 | 10.25 |
| CDY36590 | Canola | cytosol | 23.2 | 9.9 |
| TraesCS7B01G177500.1 | Wheat | nucleus | 77.6 | 7.38 |
| TraesCS7B01G460900.1 | Wheat | nucleus | 68.8 | 6.6 |
| Zm00001d031863_P013 | Maize | nucleus | 65.6 | 6.27 |
| EES14038 | Sorghum | nucleus | 65.6 | 6.24 |
| Os08t0564800-01 | Rice | extracellular | 65.6 | 6.21 |
| Zm00001d049894_P011 | Maize | nucleus | 64.8 | 6.19 |
| CDY33382 | Canola | nucleus | 17.6 | 6.15 |
| GSMUA_Achr11P... | Banana | nucleus | 53.6 | 5.25 |
| GSMUA_Achr8P09780_001 | Banana | nucleus | 51.2 | 4.74 |
| Bra026105.1-P | Field mustard | cytosol | 37.6 | 4.46 |
| CDY19980 | Canola | nucleus | 20.8 | 4.38 |
| Bra036204.1-P | Field mustard | nucleus | 21.6 | 4.37 |
| CDY19982 | Canola | nucleus | 20.8 | 4.21 |
| CDY00085 | Canola | nucleus | 27.2 | 3.95 |
| KRH20610 | Soybean | cytosol | 20.8 | 3.7 |
| CDY66823 | Canola | cytosol, nucleus | 25.6 | 3.56 |
| Bra040585.1-P | Field mustard | nucleus | 25.6 | 3.56 |
| CDY35787 | Canola | nucleus | 24.8 | 3.48 |
| CDX86356 | Canola | nucleus | 24.8 | 3.28 |
| CDX85281 | Canola | nucleus | 23.2 | 3.15 |
| Bra025408.1-P | Field mustard | nucleus | 24.8 | 2.94 |
| AT2G10440.1 | Thale cress | nucleus | 17.6 | 2.35 |
| KRH08040 | Soybean | cytosol | 1.6 | 1.94 |
| KRH45070 | Soybean | cytosol | 1.6 | 1.94 |
| CDX81731 | Canola | plastid | 2.4 | 0.36 |
| AT1G15770.1 | Thale cress | cytosol | 0.8 | 0.34 |
| CDY19981 | Canola | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400082469 | Potato | extracellular | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G359700.1 | EnsemblPlantsGene:TraesCS1B01G359700 | Gene3D:1.10.246.20 | InterPro:MED15_KIX | PANTHER:PTHR33137 | PANTHER:PTHR33137:SF4 |
| PFAM:PF16987 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr1B:-:588517635..588530257
Molecular Weight (calculated)
13745.0 Da
IEP (calculated)
7.514
GRAVY (calculated)
-0.833
Length
125 amino acids
Sequence
(BLAST)
(BLAST)
001: MDADWRPTQG SDPSAAAAAA DPAPTGAGDW RAQLQPEARS RSSRGCMETL KTHLPVSEPE GLNELQKSAV RFEQKIYTEA TNQSDYFWKI SLKMLPMESK
101: TQQAPGNAHV IPNQNNSSKV PYTVK
101: TQQAPGNAHV IPNQNNSSKV PYTVK
0001: MNFVDVIKFA YFEFLDSRSE NLMDNNNWRP SLPNGEPAMD TGDWRTQLPP DSRQKIVNKI METLKKHLPF SGPEGINELR RIAARFEEKI FSGALNQTDY
0101: LRKISMKMLT METKSQNAAG SSAAIPAANN GTSIDSIPTN QGQLLPGSLS TNQSQAPQPL LSQTMQNNTA SGMTGSTALP SSMPPVSSIT NNNTTSVVNQ
0201: NANMQNVAGM LQDSSGQHGL SSNMFSGPQR QMLGRPHAMS SQQQQQPYLY QQQLQQQLLK QNFQSGNVPN PNSLLPSHIQ QQQQNVLQPN QLHSSQQPGV
0301: PTSATQPSTV NSAPLQGLHT NQQSSPQLSS QQTTQSMLRQ HQSSMLRQHP QSQQASGIHQ QQSSLPQQSI SPLQQQPTQL MRQQAANSSG IQQKQMMGQH
0401: VVGDMQQQHQ QRLLNQQNNV MNIQQQQSQQ QPLQQPQQQQ KQQPPAQQQL MSQQNSLQAT HQNPLGTQSN VAGLQQPQQQ MLNSQVGNSS LQNNQHSVHM
0501: LSQPTVGLQR THQAGHGLYS SQGQQSQNQP SQQQMMPQLQ SHHQQLGLQQ QPNLLQQDVQ QRLQASGQVT GSLLPPQNVV DQQRQLYQSQ RTLPEMPSSS
0601: LDSTAQTESA NGGDWQEEVY QKIKSMKETY LPDLNEIYQR VAAKLQQDSM PQQQRSDQLE KLRQFKTMLE RMIQFLSVSK SNIMPALKDK VAYYEKQIIG
0701: FLNMHRPRKP VQQGQLPQSQ MQPMQQPQSQ TVQDQSHDNQ TNPQMQSMSM QGAGPRAQQS SMTNMQSNVL SSRPGVSAPQ QNIPSSIPAS SLESGQGNTL
0801: NNGQQVAMGS MQQNTSQLVN NSSASAQSGL STLQSNVNQP QLSSSLLQHQ HLKQQQDQQM QLKQQFQQRQ MQQQQLQARQ QQQQQQLQAR QQAAQLQQMN
0901: DMNDLTSRQG MNVSRGMFQQ HSMQGQRANY PLQQLKPGAV SSPQLLQGAS PQMSQHLSPQ VDQKNTVNKM GTPLQPANSP FVVPSPSSTP LAPSPMQVDS
1001: EKPGSSSLSM GNIARQQATG MQGVVQSLAI GTPGISASPL LQEFTSPDGN ILNSSTITSG KPSATELPIE RLIRAVKSIS PQALSSAVSD IGSVVSMVDR
1101: IAGSAPGNGS RASVGEDLVA MTKCRLQARN FMTQEGMMAT KKMKRHTTAM PLSVASLGGS VGDNYKQFAG SETSDLESTA TSDGKKARTE TEHALLEEIK
1201: EINQRLIDTV VEISDDEDAA DPSEVAISSI GCEGTTVRFS FIAVSLSPAL KAHLSSTQMS PIQPLRLLVP CSYPNGSPSL LDKLPVETSK ENEDLSSKAM
1301: ARFNILLRSL SQPMSLKDIA KTWDACARAV ICEYAQQFGG GTFSSKYGTW EKYVAAS
0101: LRKISMKMLT METKSQNAAG SSAAIPAANN GTSIDSIPTN QGQLLPGSLS TNQSQAPQPL LSQTMQNNTA SGMTGSTALP SSMPPVSSIT NNNTTSVVNQ
0201: NANMQNVAGM LQDSSGQHGL SSNMFSGPQR QMLGRPHAMS SQQQQQPYLY QQQLQQQLLK QNFQSGNVPN PNSLLPSHIQ QQQQNVLQPN QLHSSQQPGV
0301: PTSATQPSTV NSAPLQGLHT NQQSSPQLSS QQTTQSMLRQ HQSSMLRQHP QSQQASGIHQ QQSSLPQQSI SPLQQQPTQL MRQQAANSSG IQQKQMMGQH
0401: VVGDMQQQHQ QRLLNQQNNV MNIQQQQSQQ QPLQQPQQQQ KQQPPAQQQL MSQQNSLQAT HQNPLGTQSN VAGLQQPQQQ MLNSQVGNSS LQNNQHSVHM
0501: LSQPTVGLQR THQAGHGLYS SQGQQSQNQP SQQQMMPQLQ SHHQQLGLQQ QPNLLQQDVQ QRLQASGQVT GSLLPPQNVV DQQRQLYQSQ RTLPEMPSSS
0601: LDSTAQTESA NGGDWQEEVY QKIKSMKETY LPDLNEIYQR VAAKLQQDSM PQQQRSDQLE KLRQFKTMLE RMIQFLSVSK SNIMPALKDK VAYYEKQIIG
0701: FLNMHRPRKP VQQGQLPQSQ MQPMQQPQSQ TVQDQSHDNQ TNPQMQSMSM QGAGPRAQQS SMTNMQSNVL SSRPGVSAPQ QNIPSSIPAS SLESGQGNTL
0801: NNGQQVAMGS MQQNTSQLVN NSSASAQSGL STLQSNVNQP QLSSSLLQHQ HLKQQQDQQM QLKQQFQQRQ MQQQQLQARQ QQQQQQLQAR QQAAQLQQMN
0901: DMNDLTSRQG MNVSRGMFQQ HSMQGQRANY PLQQLKPGAV SSPQLLQGAS PQMSQHLSPQ VDQKNTVNKM GTPLQPANSP FVVPSPSSTP LAPSPMQVDS
1001: EKPGSSSLSM GNIARQQATG MQGVVQSLAI GTPGISASPL LQEFTSPDGN ILNSSTITSG KPSATELPIE RLIRAVKSIS PQALSSAVSD IGSVVSMVDR
1101: IAGSAPGNGS RASVGEDLVA MTKCRLQARN FMTQEGMMAT KKMKRHTTAM PLSVASLGGS VGDNYKQFAG SETSDLESTA TSDGKKARTE TEHALLEEIK
1201: EINQRLIDTV VEISDDEDAA DPSEVAISSI GCEGTTVRFS FIAVSLSPAL KAHLSSTQMS PIQPLRLLVP CSYPNGSPSL LDKLPVETSK ENEDLSSKAM
1301: ARFNILLRSL SQPMSLKDIA KTWDACARAV ICEYAQQFGG GTFSSKYGTW EKYVAAS
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Oth /.../aryotes - 38082 (source: NCBI BLink). [Source:TAIR;Acc:AT1G15780]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.