CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61380	Canola	extracellular, vacuole	45.81	40.0
CDY36590	Canola	cytosol	20.67	25.26
TraesCS7D01G546200.1	Wheat	nucleus	24.86	24.65
CDY33381	Canola	cytosol, extracellular	20.11	22.29
HORVU5Hr1G125120.1	Barley	cytosol	15.36	22.0
CDY33379	Canola	cytosol	5.03	21.95
TraesCS7B01G495400.1	Wheat	cytosol	24.02	21.29
TraesCS7B01G493100.1	Wheat	nucleus	20.11	19.41
CDX81731	Canola	plastid	43.85	18.65
CDY53314	Canola	mitochondrion, nucleus	43.85	18.45
TraesCS1D01G348800.1	Wheat	nucleus	6.15	17.89
TraesCS4A01G315600.1	Wheat	nucleus	24.02	17.81
TraesCS1B01G359700.1	Wheat	cytosol, mitochondrion, nucleus	6.15	17.6
TraesCS5D01G551100.1	Wheat	nucleus	20.95	17.48
CDY35039	Canola	cytosol	6.7	17.39
CDY36589	Canola	nucleus	57.82	17.26
TraesCS1A01G346100.1	Wheat	nucleus	5.87	17.21
OQU80675	Sorghum	nucleus	20.11	16.94
TraesCS1D01G411400.1	Wheat	nucleus	28.21	16.61
HORVU2Hr1G123080.2	Barley	cytosol	10.61	16.45
TraesCS1B01G433100.1	Wheat	nucleus	27.93	16.45
TraesCS1A01G403500.2	Wheat	nucleus	27.65	16.39
TraesCS2D01G594100.1	Wheat	cytosol	10.34	15.95
CDX83970	Canola	mitochondrion	53.07	15.91
TraesCSU01G036900.1	Wheat	cytosol	10.06	15.86
GSMUA_Achr8P09800_001	Banana	nucleus	6.15	15.71
HORVU5Hr1G106220.2	Barley	cytosol, nucleus	23.74	15.29
CDY36587	Canola	nucleus	50.84	15.26
TraesCS2B01G599400.1	Wheat	cytosol	9.5	15.11
TraesCS2B01G598700.1	Wheat	cytosol	9.78	15.09
AT1G15770.1	Thale cress	cytosol	12.29	15.02
CDY33380	Canola	cytosol	18.99	15.01
CDY00086	Canola	nucleus	17.04	14.12
CDY61379	Canola	nucleus	50.56	13.91
CDY36595	Canola	cytosol	13.13	13.78
CDY36591	Canola	cytosol	19.55	13.44
CDY53315	Canola	nucleus	7.54	12.05
KXG25352	Sorghum	nucleus	5.03	11.54
CDX81732	Canola	nucleus	7.82	11.52
Os08t0523600-01	Rice	cytosol, nucleus	3.07	11.46
CDY19980	Canola	nucleus	17.88	10.79
CDY19982	Canola	nucleus	17.88	10.36
CDY52868	Canola	cytosol	3.91	9.93
CDX85281	Canola	nucleus	25.14	9.76
TraesCS7B01G460900.1	Wheat	nucleus	35.2	9.67
HORVU7Hr1G118370.1	Barley	nucleus	32.96	9.65
TraesCS7D01G526100.1	Wheat	nucleus	34.92	9.61
HORVU7Hr1G060970.1	Barley	nucleus	35.2	9.6
TraesCS7B01G177500.1	Wheat	nucleus	35.2	9.58
TraesCS7A01G283500.3	Wheat	nucleus	34.92	9.56
TraesCS7A01G540000.1	Wheat	nucleus	34.64	9.52
TraesCS7D01G281700.2	Wheat	nucleus	34.36	9.37
CDX86356	Canola	nucleus	24.3	9.22
Os08t0564800-01	Rice	extracellular	33.52	9.09
CDY35787	Canola	nucleus	22.35	8.99
EES14038	Sorghum	nucleus	32.68	8.9
CDY66823	Canola	cytosol, nucleus	22.07	8.8
Zm00001d031863_P013	Maize	nucleus	32.12	8.79
Zm00001d049894_P011	Maize	nucleus	31.56	8.64
CDY00085	Canola	nucleus	20.11	8.37
KRH20610	Soybean	cytosol	14.8	7.55
PGSC0003DMT400082469	Potato	extracellular	0.84	3.03
CDY19981	Canola	cytosol	1.4	2.86

Protein Annotations

EnsemblPlants:CDY33382	EnsemblPlantsGene:GSBRNA2T00054229001	Gene3D:1.10.246.20	GO:A0A078H7I7	InterPro:MED15_KIX	PANTHER:PTHR33137
PANTHER:PTHR33137:SF4	PFAM:PF16987	ProteinID:CDY33382	ProteinID:CDY33382.1	SEG:seg	UniParc:UPI0004EEA02B
UniProt:A0A078H7I7	MapMan:35.1	:	:	:	:

Description

BnaC05g12010DBnaC05g12010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7I7]

Coordinates

chrLK032312:+:339960..342722

Molecular Weight (calculated)

41463.6 Da

IEP (calculated)

9.892

GRAVY (calculated)

-0.825

Length

358 amino acids

Sequence
(BLAST)

001: MDNNNWRPSV PKGEPGDWRN QLPQHLMSQQ NSLHQQPLGT QRSLAGLQQP QQQLLISQTN QQSVHMLSQP TVGLQPTHQA AHGLFLFQGQ QSHHQQPNLL
101: QQDVQQRLQS SGQVTGSLLP PQNVVDQQRQ LYQSQRTLPE MPSSLVDSTA QMESVNGVDW QEEVYQKIRT INEKYLAELH DIYQRASAKL EQQYSLPQQQ
201: RLKEFEKLKK FKIMLERMMR FLLISKSNIR PALKDNVDFY ETQIISFLNR HRPRKPVQQG QLPQPQMQPV KQQSSQNGNL AINTVDWRTL HPPASRQKNV
301: NTLLERLKKH VPYSGQEGIE ELMRIAVSFE ELIFNTAKNQ VDYLCRISLK MQSMEEGS

Best Arabidopsis Sequence Match ( AT1G15780.1 )
(BLAST)

0001: MDNNNWRPSL PNGEPAMDTG DWRTQLPPDS RQKIVNKIME TLKKHLPFSG PEGINELRRI AARFEEKIFS GALNQTDYLR KISMKMLTME TKSQNAAGSS
0101: AAIPAANNGT SIDSIPTNQG QLLPGSLSTN QSQAPQPLLS QTMQNNTASG MTGSTALPSS MPPVSSITNN NTTSVVNQNA NMQNVAGMLQ DSSGQHGLSS
0201: NMFSGPQRQM LGRPHAMSSQ QQQQPYLYQQ QLQQQLLKQN FQSGNVPNPN SLLPSHIQQQ QQNVLQPNQL HSSQQPGVPT SATQPSTVNS APLQGLHTNQ
0301: QSSPQLSSQQ TTQSMLRQHQ SSMLRQHPQS QQASGIHQQQ SSLPQQSISP LQQQPTQLMR QQAANSSGIQ QKQMMGQHVV GDMQQQHQQR LLNQQNNVMN
0401: IQQQQSQQQP LQQPQQQQKQ QPPAQQQLMS QQNSLQATHQ NPLGTQSNVA GLQQPQQQML NSQVGNSSLQ NNQHSVHMLS QPTVGLQRTH QAGHGLYSSQ
0501: GQQSQNQPSQ QQMMPQLQSH HQQLGLQQQP NLLQQDVQQR LQASGQVTGS LLPPQNVVDQ QRQLYQSQRT LPEMPSSSLD STAQTESANG GDWQEEVYQK
0601: IKSMKETYLP DLNEIYQRVA AKLQQDSMPQ QQRSDQLEKL RQFKTMLERM IQFLSVSKSN IMPALKDKVA YYEKQIIGFL NMHRPRKPVQ QGQLPQSQMQ
0701: PMQQPQSQTV QDQSHDNQTN PQMQSMSMQG AGPRAQQSSM TNMQSNVLSS RPGVSAPQQN IPSSIPASSL ESGQGNTLNN GQQVAMGSMQ QNTSQLVNNS
0801: SASAQSGLST LQSNVNQPQL SSSLLQHQHL KQQQDQQMQL KQQFQQRQMQ QQQLQARQQQ QQQQLQARQQ AAQLQQMNDM NDLTSRQGMN VSRGMFQQHS
0901: MQGQRANYPL QQLKPGAVSS PQLLQGASPQ MSQHLSPQVD QKNTVNKMGT PLQPANSPFV VPSPSSTPLA PSPMQVDSEK PGSSSLSMGN IARQQATGMQ
1001: GVVQSLAIGT PGISASPLLQ EFTSPDGNIL NSSTITSGKP SATELPIERL IRAVKSISPQ ALSSAVSDIG SVVSMVDRIA GSAPGNGSRA SVGEDLVAMT
1101: KCRLQARNFM TQEGMMATKK MKRHTTAMPL SVASLGGSVG DNYKQFAGSE TSDLESTATS DGKKARTETE HALLEEIKEI NQRLIDTVVE ISDDEDAADP
1201: SEVAISSIGC EGTTVRFSFI AVSLSPALKA HLSSTQMSPI QPLRLLVPCS YPNGSPSLLD KLPVETSKEN EDLSSKAMAR FNILLRSLSQ PMSLKDIAKT
1301: WDACARAVIC EYAQQFGGGT FSSKYGTWEK YVAAS

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Oth /.../aryotes - 38082 (source: NCBI BLink). [Source:TAIR;Acc:AT1G15780]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.