Factsheet for GSMUA_Achr8P09800_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P09790_001	Banana	cytosol	25.71	45.0
GSMUA_Achr8P09810_001	Banana	nucleus	32.86	38.98
Bra026748.1-P	Field mustard	cytosol	16.43	16.31
CDY52868	Canola	cytosol	16.43	16.31
CDY33381	Canola	cytosol, extracellular	20.71	8.98
CDY36590	Canola	cytosol	17.86	8.53
KRH52764	Soybean	nucleus	12.14	6.97
VIT_08s0040g00740.t01	Wine grape	nucleus	20.0	6.88
CDY33382	Canola	nucleus	15.71	6.15
GSMUA_Achr11P...	Banana	nucleus	37.86	4.15
GSMUA_Achr8P09780_001	Banana	nucleus	38.57	4.0
Bra036204.1-P	Field mustard	nucleus	16.43	3.72
CDY19982	Canola	nucleus	16.43	3.72
CDY00085	Canola	nucleus	21.43	3.49
CDY19980	Canola	nucleus	13.57	3.2
CDY35787	Canola	nucleus	20.0	3.15
CDY66823	Canola	cytosol, nucleus	20.0	3.12
Bra040585.1-P	Field mustard	nucleus	20.0	3.11
KRH20610	Soybean	cytosol	15.0	2.99
KRH08040	Soybean	cytosol	2.14	2.91
KRH45070	Soybean	cytosol	2.14	2.91
Bra026105.1-P	Field mustard	cytosol	20.0	2.66
Bra025408.1-P	Field mustard	nucleus	20.0	2.66
CDX86356	Canola	nucleus	17.86	2.65
CDX85281	Canola	nucleus	17.14	2.6
AT2G10440.1	Thale cress	nucleus	11.43	1.71
CDX81731	Canola	plastid	5.71	0.95
AT1G15770.1	Thale cress	cytosol	0.71	0.34
GSMUA_Achr11P...	Banana	nucleus	0.71	0.13
CDY19981	Canola	cytosol	0.0	0.0
PGSC0003DMT400082469	Potato	extracellular	0.0	0.0
VIT_08s0040g00730.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr8P09800_001	EnsemblPlants:GSMUA_Achr8T09800_001	EnsemblPlantsGene:GSMUA_Achr8G09800_001	Gene3D:1.10.246.20	InterPro:MED15_KIX	PANTHER:PTHR33137
PANTHER:PTHR33137:SF4	PFAM:PF16987	SEG:seg	UniParc:UPI000294ACF3	UniProt:M0TP33	MapMan:35.2

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G09800_001]

Coordinates

chr8:-:6936623..6945975

Molecular Weight (calculated)

15357.8 Da

IEP (calculated)

5.104

GRAVY (calculated)

-0.513

Length

140 amino acids

Sequence
(BLAST)

001: MSQGSICSIW TNSIHEILKR HLPFPEPVDS NILQNVAARL EEAIFNAAHN QSEYLRKISM KMLSVVSETQ HSASINTSVS NNNNQNPTDP GTLFTGSDDS
101: DETSGWSLAE GELSTAASGS SADWRTQLQP KARHMIVNQM

Best Arabidopsis Sequence Match ( AT1G15790.4 )
(BLAST)

001: MDTTGDWRTQ FPSASRSRIV NKIMETQLKQ LPFIRPEGTN ELRKIAVRFE EKLFNNASNQ TEYLRQICMK MLNMETKSQN AAGSSSADDN TPPLVPEPSV
101: PNNEPAVNTG DWRTQQPQDS RQKNINALLD TLKKIVPHSG KEGIDELMRI AVSLEELIFN SAINQEDYLG KISLKMRTM

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (sour /.../BI BLink). [Source:TAIR;Acc:AT1G15790]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.