CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85281	Canola	nucleus	84.0	86.01
Bra025408.1-P	Field mustard	nucleus	94.28	84.44
CDY19981	Canola	cytosol	13.03	70.29
CDY00086	Canola	nucleus	29.34	64.12
CDY19982	Canola	nucleus	36.55	55.83
CDY00085	Canola	nucleus	47.56	52.21
CDY35787	Canola	nucleus	48.73	51.69
CDY66823	Canola	cytosol, nucleus	49.05	51.56
AT2G10440.1	Thale cress	nucleus	47.88	48.34
CDY19980	Canola	nucleus	28.28	45.03
CDX81731	Canola	plastid	22.99	25.77
TraesCS1A01G346100.1	Wheat	nucleus	3.28	25.41
CDY53314	Canola	mitochondrion, nucleus	22.88	25.38
TraesCS1D01G348800.1	Wheat	nucleus	3.28	25.2
TraesCS1B01G359700.1	Wheat	cytosol, mitochondrion, nucleus	3.28	24.8
CDY33379	Canola	cytosol	2.12	24.39
CDY33382	Canola	nucleus	9.22	24.3
TraesCS7D01G546200.1	Wheat	nucleus	9.11	23.82
HORVU5Hr1G125120.1	Barley	cytosol	6.14	23.2
CDY53315	Canola	nucleus	5.3	22.32
TraesCS7B01G495400.1	Wheat	cytosol	9.32	21.78
CDY35039	Canola	cytosol	3.18	21.74
CDY36587	Canola	nucleus	26.91	21.29
CDX83970	Canola	mitochondrion	26.27	20.77
OQU80675	Sorghum	nucleus	9.32	20.71
HORVU7Hr1G118370.1	Barley	nucleus	26.8	20.69
CDY61379	Canola	nucleus	27.97	20.29
TraesCS4A01G315600.1	Wheat	nucleus	10.38	20.29
TraesCS7D01G526100.1	Wheat	nucleus	27.86	20.22
TraesCS7A01G540000.1	Wheat	nucleus	27.54	19.97
TraesCS7B01G177500.1	Wheat	nucleus	27.75	19.92
HORVU7Hr1G060970.1	Barley	nucleus	27.65	19.88
TraesCS7A01G283500.3	Wheat	nucleus	27.44	19.82
TraesCS5D01G551100.1	Wheat	nucleus	9.0	19.81
TraesCS7D01G281700.2	Wheat	nucleus	27.54	19.8
TraesCS7B01G460900.1	Wheat	nucleus	27.33	19.8
CDX81732	Canola	nucleus	5.08	19.75
EES14038	Sorghum	nucleus	27.33	19.63
TraesCS7B01G493100.1	Wheat	nucleus	7.63	19.41
TraesCSU01G036900.1	Wheat	cytosol	4.66	19.38
Zm00001d031863_P013	Maize	nucleus	26.8	19.34
Os08t0564800-01	Rice	extracellular	27.01	19.32
TraesCS1B01G433100.1	Wheat	nucleus	12.39	19.24
TraesCS1D01G411400.1	Wheat	nucleus	12.39	19.24
TraesCS1A01G403500.2	Wheat	nucleus	12.29	19.21
Zm00001d049894_P011	Maize	nucleus	26.59	19.19
TraesCS2B01G599400.1	Wheat	cytosol	4.56	19.11
TraesCS2D01G594100.1	Wheat	cytosol	4.66	18.97
KXG25352	Sorghum	nucleus	3.07	18.59
TraesCS2B01G598700.1	Wheat	cytosol	4.56	18.53
HORVU2Hr1G123080.2	Barley	cytosol	4.45	18.18
GSMUA_Achr8P09800_001	Banana	nucleus	2.65	17.86
Os08t0523600-01	Rice	cytosol, nucleus	1.8	17.71
HORVU5Hr1G106220.2	Barley	cytosol, nucleus	10.06	17.09
CDY52868	Canola	cytosol	2.54	17.02
VIT_08s0040g00740.t01	Wine grape	nucleus	7.31	16.95
CDY61380	Canola	extracellular, vacuole	7.31	16.83
CDY33381	Canola	cytosol, extracellular	3.81	11.15
CDY36589	Canola	nucleus	14.09	11.09
CDY36595	Canola	cytosol	3.92	10.85
CDY36590	Canola	cytosol	3.07	9.9
CDY33380	Canola	cytosol	4.13	8.61
CDY36591	Canola	cytosol	4.13	7.49

Protein Annotations

EnsemblPlants:CDX86356	EnsemblPlantsGene:GSBRNA2T00144481001	Gene3D:1.10.246.20	GO:A0A078DAQ4	GO:GO:0003674	GO:GO:0003712
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:KIX_dom_sf	InterPro:MED15_KIX	PFAM:PF16987	ProteinID:CDX86356	ProteinID:CDX86356.1	SEG:seg
SUPFAM:SSF47040	UniParc:UPI0004EEA6B2	MapMan:15.3.3.3.5	:	:	:

Description

BnaA06g30730D

Coordinates

chrLK031845:+:1186782..1191413

Molecular Weight (calculated)

105909.0 Da

IEP (calculated)

9.733

GRAVY (calculated)

-0.832

Length

944 amino acids

Sequence
(BLAST)

001: MEGNSNWKPN QQGGDSLASN NANDWRSQLA PDMRKKVILA IVEKLKIYYP TRHPNAIKNT AFSFEGKIYA AAKDKDDYMR TIKGNIMNFD RKLQSSNVQS
101: GSSVNGTNTP APAAQALNQG QSTPTSQQWL HQNNNNIQSN LNILDSFKSS SRFSKTDPWK GTSSSSAATE FQLLPESNGS TALERGSTTF IHAAAAKSEQ
201: KRQEREQLIS HLMNDKDTQQ NHLTPQQNNG EKQAAFRASS SQQNNIASFQ ERPLQNNSIQ QRLYSHKVGQ SQTMIQQQYQ PQHTMQQAQN RILQQPLDDT
301: QRFQASGSLL QTQQNQPYQL QRTSPANTFS IDYTNTFFFL ASQDSTGQTV NASGGGDWQE ETYQKIKALK EKYILVVGAL YQKLSNKLRE IDAHPQQKIQ
401: HGHMEKLRAS KATLKLVLVF LNVSRNAITE SHREKFNIYE EQLLRFVKHN QTVTRRPMQQ QQQQQQQVHL PPSQTHQTAL QSQSGHQVFH VPQSSALSNL
501: TTSHTAMPHS SQTRPKMEPK EETNIMTLPA SNPQPSMFQQ KQFHHLSMQQ RQQQQPQKNH QQLQMPKNEM NDVRMSQRVN NKAGLRQQNI SPNQRHLAKP
601: LASPQLVDQQ ILPTTFNKNG TSSQSGGSPF VAPSSNLGDP ENPISVESPS SHDYQLQPAA QEHPPEPNAE RPIDRLIKAF QSSSPESLAQ SINEMSSVIS
701: LTDRLAGCVQ SIGGSRARVP QDLSERTRLR LQRGETNPTN KRFKRSITTQ PIDITSETER YKQFSSLESE VDSTASSGSK ANKIEAGLAL LQEIMEVNRR
801: LVETMVSICS EDVGPSEVTT GTIVMCSYAP VALCDTFQAL YKSGHVSQIQ PLRLLVPENY PHSPILIENI PFDSSVNKHE DLSARTRSRF GLSMKEFSEP
901: MSLTEIAQAW DACARATMAE YAERHGGGTF SSKHGHWEPV LRAS

Best Arabidopsis Sequence Match ( AT2G10440.1 )
(BLAST)

001: MEGNTNWKPN EQGGNRDAAN NRIDWRSQHE PELRQKVLSK IVEKFKEKFH AHEEYKINDI ASKFEENFYS IATDKTTTSQ QWLQQNTQSN LCVICFAKSG
101: PYNRSRFSKT DTCSVTAAAT SSAKFVETTY STAFSSIKLT KHSITDQKSV FDTTEQKRQE QEQLINQLTN LPTSRPNNRD QQGAFQVSSS QQNNNVTLHA
201: MSQQKNNLQS MTRGQQVGQS QPMMSQQYRQ QYPMQQDPQN RNLQKHLDFV QNNTNQFQAA SSLRQTQNIT DQQNQPQQLE RANPSILIMN IIVASQDSTG
301: KTVNVNAGNW QEETYQKIKK LKEMCLPVLS LMHQRVAEKL RETESLPPQP MQAQWIEKLK AGKLSMEHLM FFLNVHRSSV SEKHRDKFSQ YEYHILKFTK
401: SQTMVLRPTQ QQQGQFPPSQ TAMQTQSPQV HVSQSLYKEQ RRSRLMPSSQ NEASSLLQIR PKLDPRDENI IMASSGNVML PSVKQNPRAV NTNISSVQSL
501: QKQKRFHHRQ MQQQQPQQGN HQHQMQTNEM NDVRMRERVN IKARLLEQQV SSSQRQVPKQ ESNVSSSQIQ NHSSPQLVDQ HILPATINKT GTPLNSSGSA
601: FVAPAPSPVP GDSEMPISVE SPVSGVDEIN STLDSSSKLG TQETPLLFVP PPEPITERPI DRLIKAFQAA SPKSLAESVS EISSVISMVD MIGGSFPSSG
701: GSRAGLGEDL SERTRNFTTH EETNLSKRMK RSINIVPPDM SSQIDSYEQL SSLESEVVST TSSGLKVNNI APGYALLQEI KETNGRLVET VVEICDEDSL
801: GTIVTCTYAP VALSATFKDH YKSGKIIFYV SKCLMQAQIQ PLRLLFPMDY PYSSPIVLEE ISFDTSVHKY EDLSARTRSR FSLSMKEFSE PGFSKGIAQT
901: WNDCARATMV EYAERHGGGT FSSKYGAWET VLRAS

Arabidopsis Description

MED15CProbable mediator of RNA polymerase II transcription subunit 15c [Source:UniProtKB/Swiss-Prot;Acc:Q9SHV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.