CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026103.1-P	Field mustard	cytosol	100.0	100.0
CDY35039	Canola	cytosol	23.46	57.97
CDY33379	Canola	cytosol	12.9	53.66
CDY52868	Canola	cytosol	19.06	46.1
GSMUA_Achr8P09810_001	Banana	nucleus	12.32	35.59
AT1G15790.3	Thale cress	cytosol	17.6	31.75
CDY53315	Canola	nucleus	18.18	27.68
CDX81732	Canola	nucleus	18.18	25.51
CDY33380	Canola	cytosol	33.43	25.17
CDY36591	Canola	cytosol	33.14	21.69
CDY33381	Canola	cytosol, extracellular	18.77	19.81
CDY36590	Canola	cytosol	13.49	15.7
CDY33382	Canola	nucleus	13.78	13.13
CDY36589	Canola	nucleus	28.15	8.01
CDX83970	Canola	mitochondrion	26.39	7.54
CDY61380	Canola	extracellular, vacuole	8.21	6.83
CDY36587	Canola	nucleus	23.75	6.79
CDY61379	Canola	nucleus	24.93	6.53
CDY19982	Canola	nucleus	10.26	5.66
CDY00085	Canola	nucleus	12.61	5.0
CDY35787	Canola	nucleus	12.32	4.72
CDY66823	Canola	cytosol, nucleus	11.73	4.45
CDY19980	Canola	nucleus	7.62	4.38
CDX86356	Canola	nucleus	10.85	3.92
CDX85281	Canola	nucleus	10.26	3.8
CDX81731	Canola	plastid	6.74	2.73
CDY53314	Canola	mitochondrion, nucleus	6.74	2.7
CDY00086	Canola	nucleus	2.35	1.85
CDY19981	Canola	cytosol	0.59	1.14

Protein Annotations

EnsemblPlants:CDY36595	EnsemblPlantsGene:GSBRNA2T00062293001	Gene3D:1.10.246.20	GO:A0A078HE18	InterPro:MED15_KIX	PANTHER:PTHR33137
PANTHER:PTHR33137:SF4	PFAM:PF16987	ProteinID:CDY36595	ProteinID:CDY36595.1	SEG:seg	UniParc:UPI000253F121
UniProt:A0A078HE18	MapMan:35.1	:	:	:	:

Description

BnaA06g10480DBnaA06g10480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HE18]

Coordinates

chrLK032378:-:364533..367224

Molecular Weight (calculated)

38473.8 Da

IEP (calculated)

9.730

GRAVY (calculated)

-0.678

Length

341 amino acids

Sequence
(BLAST)

001: MGTDDWRAHL TPDSRQKIAN NITEKLMKHL PFYGAKGMNE AGTIAATFED EIFRGAVDQT DYLRKISMKM VTMETKWQDA AGSSSSSSFS VPEASKKLPL
101: KTDNVNSKPL LTRAEAAVNT CDLTTQLPSD PRQNNANTTY TSVQYMTGPS LPSREPAMTT YDWRTQLKPD SRERVVNKIT ETLQKHIPYS SPEEVRRIAV
201: KFEEKIFRSA VNHTGYLRSI SMKMLTMETR YQTAARSSTI LPIAGAYKSL HFNPGCHQMT IEGPVNTGDW RTCLPPDSRK KNANKIKGTL KEHVPNCGKE
301: GNKELKRIAV SFEELIFNTA IDQVDYFRKI SFKIQSTKES D

Best Arabidopsis Sequence Match ( AT1G15790.4 )
(BLAST)

001: MDTTGDWRTQ FPSASRSRIV NKIMETQLKQ LPFIRPEGTN ELRKIAVRFE EKLFNNASNQ TEYLRQICMK MLNMETKSQN AAGSSSADDN TPPLVPEPSV
101: PNNEPAVNTG DWRTQQPQDS RQKNINALLD TLKKIVPHSG KEGIDELMRI AVSLEELIFN SAINQEDYLG KISLKMRTM

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (sour /.../BI BLink). [Source:TAIR;Acc:AT1G15790]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.