CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028029.1-P	Field mustard	cytosol	39.51	83.26
CDY36591	Canola	cytosol	76.82	66.79
AT1G15790.3	Thale cress	cytosol	23.84	57.14
GSMUA_Achr8P09810_001	Banana	nucleus	12.14	46.61
CDY33379	Canola	cytosol	7.95	43.9
CDY33381	Canola	cytosol, extracellular	28.7	40.25
CDY52868	Canola	cytosol	12.36	39.72
CDY36590	Canola	cytosol	24.06	37.2
CDY35039	Canola	cytosol	10.82	35.51
CDY36595	Canola	cytosol	25.17	33.43
CDY53315	Canola	nucleus	15.67	31.7
CDX81732	Canola	nucleus	15.67	29.22
CDY61380	Canola	extracellular, vacuole	17.66	19.51
CDY33382	Canola	nucleus	15.01	18.99
CDY36589	Canola	nucleus	39.51	14.93
CDX83970	Canola	mitochondrion	21.19	8.04
CDY36587	Canola	nucleus	20.31	7.71
CDY61379	Canola	nucleus	20.53	7.15
CDY19982	Canola	nucleus	7.73	5.66
CDY00085	Canola	nucleus	8.61	4.53
CDY19980	Canola	nucleus	5.74	4.38
CDY35787	Canola	nucleus	8.61	4.38
CDX86356	Canola	nucleus	8.61	4.13
CDX85281	Canola	nucleus	8.39	4.12
CDY66823	Canola	cytosol, nucleus	8.17	4.12
CDY00086	Canola	nucleus	1.77	1.85
CDX81731	Canola	plastid	3.31	1.78
CDY53314	Canola	mitochondrion, nucleus	3.31	1.76
CDY19981	Canola	cytosol	0.66	1.71

Protein Annotations

EnsemblPlants:CDY33380	EnsemblPlantsGene:GSBRNA2T00054227001	Gene3D:1.10.246.20	GO:A0A078H3Z0	GO:GO:0003674	GO:GO:0003712
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:KIX_dom_sf	InterPro:MED15_KIX	PANTHER:PTHR33137	PANTHER:PTHR33137:SF4	PFAM:PF16987	ProteinID:CDY33380
ProteinID:CDY33380.1	SUPFAM:SSF47040	UniParc:UPI0004EE3FF2	UniProt:A0A078H3Z0	MapMan:35.1	:

Description

BnaC05g12030DBnaC05g12030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3Z0]

Coordinates

chrLK032312:+:331085..335351

Molecular Weight (calculated)

51419.0 Da

IEP (calculated)

8.412

GRAVY (calculated)

-0.441

Length

453 amino acids

Sequence
(BLAST)

001: MLTMEITKWQ SAAGSSSLPF PLPIPGVYNS LPLYPGCHQM TMEGPIKAEP AVNASDWRTC LLPDSRKKNA NKIKGTVKKH IPNRGKERNK ELKKIAATFE
101: ELIFNTAIDQ GFVFFFWSGC EKIIKVLILM APSVNNGEPA MDTNDWRNHL PFDSRQKIVS KIMATLMKHL PYSGPEGINE LKRIAVRFEE KVFSSAVYQT
201: DYLRKISMKM LTMETRSQNV AGSASYIPAD RSNLALDELD NLMINGNVEP FLLNEEPAIN SGDWRTQLPP GSRQNIVNKI MDTLKRHFPY SGPEGINELK
301: RIAARFEEKI FSSAVNQTDY LRKISMKMLT METKAQNAAG SDSSILADSN NLTLDIIRNH LIKDNAEPSL LNVEPTINSG DWRIQLPLDS RQKNIDKLME
401: TLKKHVPYSG QEGIEELRRI TLSFEELIFN TAINQVDYFR KISLKMQTME EDD

Best Arabidopsis Sequence Match ( AT1G15790.4 )
(BLAST)

001: MDTTGDWRTQ FPSASRSRIV NKIMETQLKQ LPFIRPEGTN ELRKIAVRFE EKLFNNASNQ TEYLRQICMK MLNMETKSQN AAGSSSADDN TPPLVPEPSV
101: PNNEPAVNTG DWRTQQPQDS RQKNINALLD TLKKIVPHSG KEGIDELMRI AVSLEELIFN SAINQEDYLG KISLKMRTM

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (sour /.../BI BLink). [Source:TAIR;Acc:AT1G15790]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.