Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g057460.2.1 | Tomato | cytosol | 24.34 | 49.46 |
| Bra028029.1-P | Field mustard | cytosol | 53.97 | 47.44 |
| VIT_13s0067g02270.t01 | Wine grape | cytosol | 23.81 | 47.37 |
| Bra026104.1-P | Field mustard | mitochondrion | 48.68 | 46.23 |
| VIT_13s0067g02320.t01 | Wine grape | cytosol | 28.04 | 44.17 |
| CDY33379 | Canola | cytosol | 17.46 | 40.24 |
| GSMUA_Achr8P09810_001 | Banana | nucleus | 22.22 | 35.59 |
| PGSC0003DMT400090172 | Potato | cytosol | 24.87 | 34.56 |
| VIT_00s0273g00040.t01 | Wine grape | nucleus | 16.93 | 34.41 |
| VIT_19s0140g00050.t01 | Wine grape | nucleus | 16.4 | 34.07 |
| VIT_13s0067g02180.t01 | Wine grape | mitochondrion, nucleus | 25.93 | 34.03 |
| VIT_00s0239g00150.t01 | Wine grape | cytosol | 17.99 | 33.66 |
| VIT_00s0239g00010.t01 | Wine grape | cytosol | 20.11 | 33.63 |
| VIT_09s0070g00940.t01 | Wine grape | nucleus | 18.52 | 33.02 |
| VIT_15s0045g00200.t01 | Wine grape | nucleus | 15.87 | 32.61 |
| VIT_00s0239g00070.t01 | Wine grape | cytosol | 19.58 | 32.46 |
| CDY35039 | Canola | cytosol | 23.28 | 31.88 |
| VIT_13s0067g02040.t01 | Wine grape | cytosol, mitochondrion, nucleus, peroxisome, plastid | 23.28 | 28.76 |
| VIT_00s0198g00120.t01 | Wine grape | nucleus | 15.34 | 28.71 |
| PGSC0003DMT400019244 | Potato | cytosol | 22.75 | 28.67 |
| Bra026102.1-P | Field mustard | cytosol | 23.81 | 28.3 |
| VIT_09s0070g00870.t01 | Wine grape | extracellular | 16.4 | 27.19 |
| VIT_00s0198g00090.t01 | Wine grape | cytosol | 19.58 | 27.01 |
| CDY33380 | Canola | cytosol | 57.14 | 23.84 |
| VIT_00s0173g00220.t01 | Wine grape | nucleus | 19.05 | 22.64 |
| PGSC0003DMT400022608 | Potato | cytosol | 20.63 | 21.67 |
| CDY36591 | Canola | cytosol | 57.14 | 20.73 |
| VIT_13s0067g02200.t01 | Wine grape | mitochondrion | 19.05 | 18.95 |
| CDY36595 | Canola | cytosol | 31.75 | 17.6 |
| Bra026103.1-P | Field mustard | cytosol | 31.75 | 17.6 |
| VIT_00s0169g00040.t01 | Wine grape | cytosol | 18.52 | 13.73 |
| PGSC0003DMT400027566 | Potato | mitochondrion, nucleus | 17.46 | 13.64 |
| Solyc04g009500.2.1 | Tomato | nucleus | 34.39 | 11.28 |
| VIT_07s0031g02580.t01 | Wine grape | nucleus | 15.34 | 7.69 |
| KRH47405 | Soybean | nucleus | 35.45 | 6.31 |
| AT1G15780.2 | Thale cress | nucleus | 43.92 | 6.08 |
| KRH44505 | Soybean | nucleus | 38.1 | 5.52 |
| KRH23611 | Soybean | nucleus | 38.62 | 5.51 |
| KRH09691 | Soybean | nucleus | 38.62 | 5.42 |
| KRH45069 | Soybean | nucleus | 3.17 | 3.59 |
| AT1G15770.1 | Thale cress | cytosol | 4.76 | 3.07 |
| AT2G10440.1 | Thale cress | nucleus | 13.23 | 2.67 |
| VIT_13s0047g01240.t01 | Wine grape | nucleus | 12.7 | 2.02 |
| VIT_07s0031g02570.t01 | Wine grape | cytosol | 7.94 | 1.92 |
| VIT_05s0102g01050.t01 | Wine grape | plastid | 2.12 | 1.3 |
| KRH08039 | Soybean | cytosol | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:AT1G15790 | EnsemblPlants:AT1G15790.3 | EnsemblPlantsGene:AT1G15790 | EntrezGene:838148 | Gene3D:1.10.246.20 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:MED15_KIX | PANTHER:PTHR33137 | PANTHER:PTHR33137:SF4 | PFAM:PF16987 |
| ProteinID:ANM60601.1 | RefSeq:AT1G15790 | RefSeq:AT1G15790-TAIR-G | RefSeq:NP_001322877.1 | SEG:seg | TAIR:AT1G15790 |
| TMHMM:TMhelix | UniParc:UPI000848EA2C | UniProt:A0A1P8AV92 | MapMan:35.1 | : | : |
Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (sour /.../BI BLink). [Source:TAIR;Acc:AT1G15790]
Coordinates
chr1:-:5438171..5440117
Molecular Weight (calculated)
21445.6 Da
IEP (calculated)
5.338
GRAVY (calculated)
-0.388
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTTGDWRTQ FPSASRSRIV NKIMETQLKQ LPFIRPEGTN ELRKIAVRFE EKLFNNASNQ TEYLRQICMK MLNMETKSQN AAGSSSADDN TPPLVPEPSV
101: PNNEPAVNTG DWRTQQPQDS RQKNINALLD TLKKIVPHSG KEGIDELMRI AVSLEELIFN SAINQVSVFS PSSFLLVEYF WLIIFISLV
101: PNNEPAVNTG DWRTQQPQDS RQKNINALLD TLKKIVPHSG KEGIDELMRI AVSLEELIFN SAINQVSVFS PSSFLLVEYF WLIIFISLV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.