Factsheet for VIT_00s0169g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0239g00150.t01	Wine grape	cytosol	32.55	82.18
VIT_00s0273g00040.t01	Wine grape	nucleus	29.8	81.72
VIT_19s0140g00050.t01	Wine grape	nucleus	29.02	81.32
VIT_15s0045g00200.t01	Wine grape	nucleus	28.63	79.35
VIT_09s0070g00940.t01	Wine grape	nucleus	31.37	75.47
VIT_00s0239g00070.t01	Wine grape	cytosol	32.94	73.68
VIT_00s0198g00120.t01	Wine grape	nucleus	28.63	72.28
VIT_00s0239g00010.t01	Wine grape	cytosol	30.2	68.14
VIT_09s0070g00870.t01	Wine grape	extracellular	27.84	62.28
VIT_13s0067g02180.t01	Wine grape	mitochondrion, nucleus	32.94	58.33
VIT_00s0198g00090.t01	Wine grape	cytosol	30.2	56.2
VIT_13s0067g02230.t01	Wine grape	mitochondrion	19.22	53.85
Solyc01g057460.2.1	Tomato	cytosol	19.61	53.76
VIT_00s0173g00220.t01	Wine grape	nucleus	32.55	52.2
VIT_13s0067g02270.t01	Wine grape	cytosol	18.82	50.53
VIT_13s0067g02320.t01	Wine grape	cytosol	23.14	49.17
VIT_13s0067g02040.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome, plastid	28.24	47.06
PGSC0003DMT400019244	Potato	cytosol	19.61	33.33
VIT_13s0067g02200.t01	Wine grape	mitochondrion	23.14	31.05
PGSC0003DMT400022608	Potato	cytosol	15.69	22.22
Bra026104.1-P	Field mustard	mitochondrion	15.69	20.1
Bra028029.1-P	Field mustard	cytosol	16.86	20.0
Bra026102.1-P	Field mustard	cytosol	11.76	18.87
AT1G15790.3	Thale cress	cytosol	13.73	18.52
PGSC0003DMT400027566	Potato	mitochondrion, nucleus	13.73	14.46
VIT_07s0031g02580.t01	Wine grape	nucleus	14.9	10.08
Solyc04g009500.2.1	Tomato	nucleus	22.75	10.07
Bra026103.1-P	Field mustard	cytosol	12.55	9.38
VIT_08s0040g00740.t01	Wine grape	nucleus	10.59	6.63
KRH47405	Soybean	nucleus	21.18	5.08
Bra026106.1-P	Field mustard	nucleus	21.96	4.59
KRH44505	Soybean	nucleus	21.96	4.29
KRH23611	Soybean	nucleus	21.96	4.23
KRH09691	Soybean	nucleus	21.96	4.16
Bra016651.1-P	Field mustard	endoplasmic reticulum, vacuole	21.18	4.02
Bra026749.1-P	Field mustard	nucleus	19.22	3.91
AT1G15780.2	Thale cress	nucleus	20.39	3.81
Bra026108.1-P	Field mustard	nucleus	11.76	2.67
VIT_05s0102g01050.t01	Wine grape	plastid	2.35	1.95
VIT_07s0031g02570.t01	Wine grape	cytosol	2.35	0.77
GSMUA_Achr11P...	Banana	nucleus	1.18	0.4
VIT_13s0047g01240.t01	Wine grape	nucleus	1.57	0.34
VIT_08s0040g00730.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

ArrayExpress:VIT_00s0169g00040	EMBL:FN596521	EnsemblPlants:VIT_00s0169g00040.t01	EnsemblPlantsGene:VIT_00s0169g00040	Gene3D:1.10.246.20	InterPro:MED15_KIX
PANTHER:PTHR33137	PANTHER:PTHR33137:SF4	PFAM:PF16987	ProteinID:CCB60958	ProteinID:CCB60958.1	unigene:Vvi.13439
UniParc:UPI000210976E	UniProt:F6I1Z1	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrUn:+:6089578..6102383

Molecular Weight (calculated)

28784.4 Da

IEP (calculated)

8.672

GRAVY (calculated)

-0.456

Length

255 amino acids

Sequence
(BLAST)

001: MAHGTLFFAM SNVGEDISLE NVSRMHELSE AFHAISLRHT CLLSILEQFS KLSSRAGELN LQVEAERSYH QTVLATLEKL FDEKKRNESS SQPITMEKDV
101: CVPTTSKDAN SNGFDDHGHA NQNGSYFIAK GNFSWGLELY THLMLKQMES SVFLLMIMLS FASMETLKRH LPISGPEGLH ELKKIVERFE EKIYSTTTSQ
201: SDYLRKISLK MLTMETKSFN ATTNSLPSNS ADHSKKSLND KKSPARKKAL RSRLA

Best Arabidopsis Sequence Match ( AT1G15780.1 )
(BLAST)

0001: MDNNNWRPSL PNGEPAMDTG DWRTQLPPDS RQKIVNKIME TLKKHLPFSG PEGINELRRI AARFEEKIFS GALNQTDYLR KISMKMLTME TKSQNAAGSS
0101: AAIPAANNGT SIDSIPTNQG QLLPGSLSTN QSQAPQPLLS QTMQNNTASG MTGSTALPSS MPPVSSITNN NTTSVVNQNA NMQNVAGMLQ DSSGQHGLSS
0201: NMFSGPQRQM LGRPHAMSSQ QQQQPYLYQQ QLQQQLLKQN FQSGNVPNPN SLLPSHIQQQ QQNVLQPNQL HSSQQPGVPT SATQPSTVNS APLQGLHTNQ
0301: QSSPQLSSQQ TTQSMLRQHQ SSMLRQHPQS QQASGIHQQQ SSLPQQSISP LQQQPTQLMR QQAANSSGIQ QKQMMGQHVV GDMQQQHQQR LLNQQNNVMN
0401: IQQQQSQQQP LQQPQQQQKQ QPPAQQQLMS QQNSLQATHQ NPLGTQSNVA GLQQPQQQML NSQVGNSSLQ NNQHSVHMLS QPTVGLQRTH QAGHGLYSSQ
0501: GQQSQNQPSQ QQMMPQLQSH HQQLGLQQQP NLLQQDVQQR LQASGQVTGS LLPPQNVVDQ QRQLYQSQRT LPEMPSSSLD STAQTESANG GDWQEEVYQK
0601: IKSMKETYLP DLNEIYQRVA AKLQQDSMPQ QQRSDQLEKL RQFKTMLERM IQFLSVSKSN IMPALKDKVA YYEKQIIGFL NMHRPRKPVQ QGQLPQSQMQ
0701: PMQQPQSQTV QDQSHDNQTN PQMQSMSMQG AGPRAQQSSM TNMQSNVLSS RPGVSAPQQN IPSSIPASSL ESGQGNTLNN GQQVAMGSMQ QNTSQLVNNS
0801: SASAQSGLST LQSNVNQPQL SSSLLQHQHL KQQQDQQMQL KQQFQQRQMQ QQQLQARQQQ QQQQLQARQQ AAQLQQMNDM NDLTSRQGMN VSRGMFQQHS
0901: MQGQRANYPL QQLKPGAVSS PQLLQGASPQ MSQHLSPQVD QKNTVNKMGT PLQPANSPFV VPSPSSTPLA PSPMQVDSEK PGSSSLSMGN IARQQATGMQ
1001: GVVQSLAIGT PGISASPLLQ EFTSPDGNIL NSSTITSGKP SATELPIERL IRAVKSISPQ ALSSAVSDIG SVVSMVDRIA GSAPGNGSRA SVGEDLVAMT
1101: KCRLQARNFM TQEGMMATKK MKRHTTAMPL SVASLGGSVG DNYKQFAGSE TSDLESTATS DGKKARTETE HALLEEIKEI NQRLIDTVVE ISDDEDAADP
1201: SEVAISSIGC EGTTVRFSFI AVSLSPALKA HLSSTQMSPI QPLRLLVPCS YPNGSPSLLD KLPVETSKEN EDLSSKAMAR FNILLRSLSQ PMSLKDIAKT
1301: WDACARAVIC EYAQQFGGGT FSSKYGTWEK YVAAS

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Oth /.../aryotes - 38082 (source: NCBI BLink). [Source:TAIR;Acc:AT1G15780]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.