Factsheet for VIT_00s0273g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0045g00200.t01	Wine grape	nucleus	81.72	82.61
VIT_19s0140g00050.t01	Wine grape	nucleus	75.27	76.92
VIT_00s0239g00150.t01	Wine grape	cytosol	82.8	76.24
VIT_09s0070g00940.t01	Wine grape	nucleus	86.02	75.47
VIT_00s0198g00120.t01	Wine grape	nucleus	76.34	70.3
VIT_00s0239g00070.t01	Wine grape	cytosol	81.72	66.67
VIT_00s0239g00010.t01	Wine grape	cytosol	79.57	65.49
VIT_09s0070g00870.t01	Wine grape	extracellular	72.04	58.77
VIT_00s0198g00090.t01	Wine grape	cytosol	79.57	54.01
VIT_13s0067g02230.t01	Wine grape	mitochondrion	51.61	52.75
VIT_13s0067g02270.t01	Wine grape	cytosol	52.69	51.58
VIT_00s0173g00220.t01	Wine grape	nucleus	84.95	49.69
VIT_13s0067g02180.t01	Wine grape	mitochondrion, nucleus	76.34	49.31
VIT_13s0067g02320.t01	Wine grape	cytosol	60.22	46.67
Solyc01g057460.2.1	Tomato	cytosol	46.24	46.24
VIT_13s0067g02040.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome, plastid	70.97	43.14
VIT_00s0169g00040.t01	Wine grape	cytosol	81.72	29.8
VIT_13s0067g02200.t01	Wine grape	mitochondrion	56.99	27.89
PGSC0003DMT400019244	Potato	cytosol	43.01	26.67
PGSC0003DMT400022608	Potato	cytosol	36.56	18.89
Bra028029.1-P	Field mustard	cytosol	40.86	17.67
Bra026104.1-P	Field mustard	mitochondrion	37.63	17.59
Bra026102.1-P	Field mustard	cytosol	29.03	16.98
AT1G15790.3	Thale cress	cytosol	34.41	16.93
PGSC0003DMT400027566	Potato	mitochondrion, nucleus	31.18	11.98
VIT_07s0031g02580.t01	Wine grape	nucleus	39.78	9.81
Bra026103.1-P	Field mustard	cytosol	30.11	8.21
Solyc04g009500.2.1	Tomato	nucleus	50.54	8.16
VIT_08s0040g00740.t01	Wine grape	nucleus	27.96	6.39
KRH47405	Soybean	nucleus	56.99	4.99
KRH44505	Soybean	nucleus	60.22	4.29
KRH23611	Soybean	nucleus	59.14	4.15
KRH09691	Soybean	nucleus	59.14	4.09
Bra026749.1-P	Field mustard	nucleus	49.46	3.67
Bra026106.1-P	Field mustard	nucleus	47.31	3.61
Bra016651.1-P	Field mustard	endoplasmic reticulum, vacuole	50.54	3.5
AT1G15780.2	Thale cress	nucleus	50.54	3.44
Bra026108.1-P	Field mustard	nucleus	26.88	2.22
VIT_05s0102g01050.t01	Wine grape	plastid	5.38	1.63
VIT_07s0031g02570.t01	Wine grape	cytosol	6.45	0.77
GSMUA_Achr11P...	Banana	nucleus	4.3	0.53
VIT_13s0047g01240.t01	Wine grape	nucleus	4.3	0.34
VIT_08s0040g00730.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

ArrayExpress:VIT_00s0273g00040	EMBL:FN595784	EnsemblPlants:VIT_00s0273g00040.t01	EnsemblPlantsGene:VIT_00s0273g00040	Gene3D:1.10.246.20	InterPro:MED15_KIX
PANTHER:PTHR33137	PANTHER:PTHR33137:SF4	PFAM:PF16987	ProteinID:CCB52721	ProteinID:CCB52721.1	UniParc:UPI00015CDB03
UniProt:F6HJL8	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:20224185..20224636

Molecular Weight (calculated)

10547.9 Da

IEP (calculated)

10.886

GRAVY (calculated)

-0.686

Length

93 amino acids

Sequence
(BLAST)

1: MSSMDMLKRH LPISGLEGLH ELRKIAERFE EKIYSIARSQ SDYLLKISLK MLTMETKSFN VATNSLPSNS VGHSKKSPND KKSPARKKAL RSK

Best Arabidopsis Sequence Match ( AT1G15780.2 )
(BLAST)

0001: MDNNNWRPSL PNGEPAMDTG DWRTQLPPDS RQKIVNKIME TLKKHLPFSG PEGINELRRI AARFEEKIFS GALNQTDYLR KISMKMLTME TKSQNAAGSS
0101: AAIPAANNGT SIDSIPTNQG QLLPGSLSTN QSQAPQPLLS QTMQNNTASG MTGSTALPSS MPPVSSITNN NTTSVVNQNA NMQNVAGMLQ DSSGQHGLSS
0201: NMFSGPQRQM LGRPHAMSSQ QQQQPYLYQQ QLQQQLLKQN FQSGNVPNPN SLLPSHIQQQ QQNVLQPNQL HSSQQPGVPT SATQPSTVNS APLQGLHTNQ
0301: QSSPQLSSQQ TTQSMLRQHQ SSMLRQHPQS QQASGIHQQQ SSLPQQSISP LQQQPTQLMR QQAANSSGIQ QKQMMGQHVV GDMQQQHQQR LLNQQNNVMN
0401: IQQQQSQQQP LQQPQQQQKQ QPPAQQQLMS QQNSLQATHQ NPLGTQSNVA GLQQPQQQML NSQVGNSSLQ NNQHSVHMLS QPTVGLQRTH QAGHGLYSSQ
0501: GQQSQNQPSQ QQMMPQLQSH HQQLGLQQQP NLLQQDVQQR LQASGQVTGS LLPPQNVVDQ QRQLYQSQRT LPEMPSSSLD STAQTESANG GDWQEEVYQK
0601: IKSMKETYLP DLNEIYQRVA AKLQQDSMPQ QQRSDQLEKL RQFKTMLERM IQFLSVSKSN IMPALKDKVA YYEKQIIGFL NMHRPRKPVQ QGQLPQSQMQ
0701: PMQQPQSQTV QDQSHDNQTN PQMQSMSMQG AGPRAQQSSM TNMQSNVLSS RPGVSAPQQN IPSSIPASSL ESGQGNTLNN GQQVAMGSMQ QNTSQLVNNS
0801: SASAQSGLST LQSNVNQPQL SSSLLQHQHL KQQQDQQMQL KQQFQQRQMQ QQQLQARQQQ QQQQLQARQQ AAQLQQMNDM NDLTSRQGMN VSRGMFQQHS
0901: MQGQRANYPL QQLKPGAVSS PQLLQGASPQ MSQHLSPQVD QKNTVNKMGT PLQPANSPFV VPSPSSTPLA PSPMQVDSEK PGSSSLSMGN IARQQATGMQ
1001: GVVQSLAIGT PGISASPLLQ EFTSPDGNIL NSSTITSGKP SATELPIERL IRAVKSISPQ ALSSAVSDIG SVVSMVDRIA GSAPGNGSRA SVGEDLVAMT
1101: KCRLQARNFM TQEGMMATKK MKRHTTAMPL SVASLGGSVG DNYKQFAGSE TSDLESTATS DGKKARTETE HALLEEIKEI NQRLIDTVVE ISDDEDAADP
1201: SEVAISSIGC EGTTVRFSFI AVSLSPALKA HLSSTQMSPI QPLRLLVPCS YPNGSPSLLD KLPVETRYKQ ILQSQVNRTI DFPYRVEQTS TIQLKSSQES
1301: STRNPLLETA LSSYRNTVWF LEQQRKRGPV VQSYGKVQHI AKKFVTADVA QRHSQDMGRL CSGSDL

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Oth /.../aryotes - 38082 (source: NCBI BLink). [Source:TAIR;Acc:AT1G15780]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.