Factsheet for VIT_13s0067g02180.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
peroxisome 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0273g00040.t01	Wine grape	nucleus	49.31	76.34
VIT_00s0239g00150.t01	Wine grape	cytosol	52.08	74.26
VIT_15s0045g00200.t01	Wine grape	nucleus	47.22	73.91
VIT_09s0070g00940.t01	Wine grape	nucleus	52.78	71.7
VIT_19s0140g00050.t01	Wine grape	nucleus	44.44	70.33
VIT_00s0239g00070.t01	Wine grape	cytosol	54.86	69.3
VIT_00s0239g00010.t01	Wine grape	cytosol	53.47	68.14
VIT_13s0067g02040.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome, plastid	72.22	67.97
Solyc01g057460.2.1	Tomato	cytosol	43.06	66.67
VIT_13s0067g02270.t01	Wine grape	cytosol	43.75	66.32
VIT_13s0067g02320.t01	Wine grape	cytosol	54.17	65.0
VIT_00s0198g00120.t01	Wine grape	nucleus	43.75	62.38
VIT_13s0067g02230.t01	Wine grape	mitochondrion	37.5	59.34
VIT_00s0198g00090.t01	Wine grape	cytosol	54.17	56.93
VIT_09s0070g00870.t01	Wine grape	extracellular	43.75	55.26
VIT_13s0067g02200.t01	Wine grape	mitochondrion	63.89	48.42
VIT_00s0173g00220.t01	Wine grape	nucleus	52.78	47.8
PGSC0003DMT400019244	Potato	cytosol	41.67	40.0
VIT_00s0169g00040.t01	Wine grape	cytosol	58.33	32.94
PGSC0003DMT400022608	Potato	cytosol	34.03	27.22
Bra026102.1-P	Field mustard	cytosol	29.17	26.42
AT1G15790.3	Thale cress	cytosol	34.03	25.93
Bra028029.1-P	Field mustard	cytosol	33.33	22.33
Bra026104.1-P	Field mustard	mitochondrion	29.86	21.61
PGSC0003DMT400027566	Potato	mitochondrion, nucleus	28.47	16.94
Bra026103.1-P	Field mustard	cytosol	33.33	14.08
Solyc04g009500.2.1	Tomato	nucleus	48.61	12.15
VIT_07s0031g02580.t01	Wine grape	nucleus	26.39	10.08
VIT_08s0040g00740.t01	Wine grape	nucleus	22.92	8.11
KRH47405	Soybean	nucleus	49.31	6.69
KRH44505	Soybean	nucleus	50.0	5.52
KRH23611	Soybean	nucleus	49.31	5.36
KRH09691	Soybean	nucleus	48.61	5.2
Bra026106.1-P	Field mustard	nucleus	43.75	5.16
Bra026749.1-P	Field mustard	nucleus	43.06	4.95
AT1G15780.2	Thale cress	nucleus	46.53	4.9
Bra016651.1-P	Field mustard	endoplasmic reticulum, vacuole	44.44	4.77
Bra026108.1-P	Field mustard	nucleus	26.39	3.38
VIT_05s0102g01050.t01	Wine grape	plastid	3.47	1.63
VIT_07s0031g02570.t01	Wine grape	cytosol	4.17	0.77
GSMUA_Achr11P...	Banana	nucleus	2.08	0.4
VIT_13s0047g01240.t01	Wine grape	nucleus	2.08	0.25
VIT_08s0040g00730.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.246.20	EntrezGene:100243707	wikigene:100243707	MapMan:35.1	ProteinID:CBI40655	ProteinID:CBI40655.3
UniProt:D7UD40	EMBL:FN596756	GO:GO:0003674	GO:GO:0003712	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:KIX_dom_sf	EntrezGene:LOC100243707
wikigene:LOC100243707	InterPro:MED15_KIX	PFAM:PF16987	PANTHER:PTHR33137	PANTHER:PTHR33137:SF4	SUPFAM:SSF47040
TIGR:TC61600	UniParc:UPI0001984882	ArrayExpress:VIT_13s0067g02180	EnsemblPlantsGene:VIT_13s0067g02180	EnsemblPlants:VIT_13s0067g02180.t01	RefSeq:XP_002274831
RefSeq:XP_002274831.1	RefSeq:XP_003634878	RefSeq:XP_003634878.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr13_random:+:1214406..1222243

Molecular Weight (calculated)

16368.6 Da

IEP (calculated)

11.152

GRAVY (calculated)

-0.890

Length

144 amino acids

Sequence
(BLAST)

001: MTFRIRKARV SLKLPSHPTH SQSQDTNNQR PAQAEPVMDG GDWKTHLSAD SRHRIVNKIM ETLKRHLPVY GPEGLHELRK IAERFEEKIY SAATSQSDYL
101: RKISLKMLTM ETKSFNAATN SLPSNSAGHS KKSSARKKSL RSRL

Best Arabidopsis Sequence Match ( AT1G15780.2 )
(BLAST)

0001: MDNNNWRPSL PNGEPAMDTG DWRTQLPPDS RQKIVNKIME TLKKHLPFSG PEGINELRRI AARFEEKIFS GALNQTDYLR KISMKMLTME TKSQNAAGSS
0101: AAIPAANNGT SIDSIPTNQG QLLPGSLSTN QSQAPQPLLS QTMQNNTASG MTGSTALPSS MPPVSSITNN NTTSVVNQNA NMQNVAGMLQ DSSGQHGLSS
0201: NMFSGPQRQM LGRPHAMSSQ QQQQPYLYQQ QLQQQLLKQN FQSGNVPNPN SLLPSHIQQQ QQNVLQPNQL HSSQQPGVPT SATQPSTVNS APLQGLHTNQ
0301: QSSPQLSSQQ TTQSMLRQHQ SSMLRQHPQS QQASGIHQQQ SSLPQQSISP LQQQPTQLMR QQAANSSGIQ QKQMMGQHVV GDMQQQHQQR LLNQQNNVMN
0401: IQQQQSQQQP LQQPQQQQKQ QPPAQQQLMS QQNSLQATHQ NPLGTQSNVA GLQQPQQQML NSQVGNSSLQ NNQHSVHMLS QPTVGLQRTH QAGHGLYSSQ
0501: GQQSQNQPSQ QQMMPQLQSH HQQLGLQQQP NLLQQDVQQR LQASGQVTGS LLPPQNVVDQ QRQLYQSQRT LPEMPSSSLD STAQTESANG GDWQEEVYQK
0601: IKSMKETYLP DLNEIYQRVA AKLQQDSMPQ QQRSDQLEKL RQFKTMLERM IQFLSVSKSN IMPALKDKVA YYEKQIIGFL NMHRPRKPVQ QGQLPQSQMQ
0701: PMQQPQSQTV QDQSHDNQTN PQMQSMSMQG AGPRAQQSSM TNMQSNVLSS RPGVSAPQQN IPSSIPASSL ESGQGNTLNN GQQVAMGSMQ QNTSQLVNNS
0801: SASAQSGLST LQSNVNQPQL SSSLLQHQHL KQQQDQQMQL KQQFQQRQMQ QQQLQARQQQ QQQQLQARQQ AAQLQQMNDM NDLTSRQGMN VSRGMFQQHS
0901: MQGQRANYPL QQLKPGAVSS PQLLQGASPQ MSQHLSPQVD QKNTVNKMGT PLQPANSPFV VPSPSSTPLA PSPMQVDSEK PGSSSLSMGN IARQQATGMQ
1001: GVVQSLAIGT PGISASPLLQ EFTSPDGNIL NSSTITSGKP SATELPIERL IRAVKSISPQ ALSSAVSDIG SVVSMVDRIA GSAPGNGSRA SVGEDLVAMT
1101: KCRLQARNFM TQEGMMATKK MKRHTTAMPL SVASLGGSVG DNYKQFAGSE TSDLESTATS DGKKARTETE HALLEEIKEI NQRLIDTVVE ISDDEDAADP
1201: SEVAISSIGC EGTTVRFSFI AVSLSPALKA HLSSTQMSPI QPLRLLVPCS YPNGSPSLLD KLPVETRYKQ ILQSQVNRTI DFPYRVEQTS TIQLKSSQES
1301: STRNPLLETA LSSYRNTVWF LEQQRKRGPV VQSYGKVQHI AKKFVTADVA QRHSQDMGRL CSGSDL

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Oth /.../aryotes - 38082 (source: NCBI BLink). [Source:TAIR;Acc:AT1G15780]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.