Factsheet for VIT_00s0173g00220.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0198g00090.t01	Wine grape	cytosol	79.87	92.7
VIT_19s0140g00050.t01	Wine grape	nucleus	50.31	87.91
VIT_00s0273g00040.t01	Wine grape	nucleus	49.69	84.95
VIT_15s0045g00200.t01	Wine grape	nucleus	46.54	80.43
VIT_09s0070g00940.t01	Wine grape	nucleus	53.46	80.19
VIT_00s0239g00150.t01	Wine grape	cytosol	50.31	79.21
VIT_00s0198g00120.t01	Wine grape	nucleus	47.17	74.26
VIT_00s0239g00070.t01	Wine grape	cytosol	50.94	71.05
VIT_00s0239g00010.t01	Wine grape	cytosol	47.8	67.26
VIT_09s0070g00870.t01	Wine grape	extracellular	47.17	65.79
VIT_13s0067g02230.t01	Wine grape	mitochondrion	31.45	54.95
VIT_13s0067g02180.t01	Wine grape	mitochondrion, nucleus	47.8	52.78
VIT_13s0067g02270.t01	Wine grape	cytosol	31.45	52.63
Solyc01g057460.2.1	Tomato	cytosol	28.3	48.39
VIT_13s0067g02320.t01	Wine grape	cytosol	36.48	48.33
VIT_13s0067g02040.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome, plastid	42.77	44.44
VIT_00s0169g00040.t01	Wine grape	cytosol	52.2	32.55
VIT_13s0067g02200.t01	Wine grape	mitochondrion	35.85	30.0
PGSC0003DMT400019244	Potato	cytosol	27.67	29.33
PGSC0003DMT400022608	Potato	cytosol	23.27	20.56
Bra028029.1-P	Field mustard	cytosol	25.79	19.07
AT1G15790.3	Thale cress	cytosol	22.64	19.05
Bra026104.1-P	Field mustard	mitochondrion	22.64	18.09
Bra026102.1-P	Field mustard	cytosol	17.61	17.61
PGSC0003DMT400027566	Potato	mitochondrion, nucleus	20.75	13.64
VIT_07s0031g02580.t01	Wine grape	nucleus	23.9	10.08
Solyc04g009500.2.1	Tomato	nucleus	35.85	9.9
Bra026103.1-P	Field mustard	cytosol	18.24	8.5
VIT_08s0040g00740.t01	Wine grape	nucleus	15.72	6.14
KRH47405	Soybean	nucleus	35.85	5.37
KRH44505	Soybean	nucleus	40.25	4.91
KRH23611	Soybean	nucleus	38.99	4.68
KRH09691	Soybean	nucleus	38.99	4.61
Bra026749.1-P	Field mustard	nucleus	33.33	4.23
Bra016651.1-P	Field mustard	endoplasmic reticulum, vacuole	35.22	4.17
AT1G15780.2	Thale cress	nucleus	35.22	4.1
Bra026106.1-P	Field mustard	nucleus	30.19	3.93
Bra026108.1-P	Field mustard	nucleus	20.13	2.85
VIT_05s0102g01050.t01	Wine grape	plastid	3.77	1.95
VIT_07s0031g02570.t01	Wine grape	cytosol	6.29	1.28
VIT_08s0040g00730.t01	Wine grape	cytosol	2.52	1.28
GSMUA_Achr11P...	Banana	nucleus	5.03	1.06
VIT_13s0047g01240.t01	Wine grape	nucleus	6.29	0.84

Protein Annotations

ArrayExpress:VIT_00s0173g00220	EMBL:FN595532	EnsemblPlants:VIT_00s0173g00220.t01	EnsemblPlantsGene:VIT_00s0173g00220	Gene3D:1.10.246.20	InterPro:MED15_KIX
PANTHER:PTHR33137	PANTHER:PTHR33137:SF4	PFAM:PF16987	ProteinID:CCB50100	ProteinID:CCB50100.1	UniParc:UPI000210A112
UniProt:F6HD05	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:6686803..6688518

Molecular Weight (calculated)

18305.1 Da

IEP (calculated)

9.843

GRAVY (calculated)

-0.713

Length

159 amino acids

Sequence
(BLAST)

001: MIIKKQELEK SMDTLKRHLP ISGPEGLHEL RKIVERFEEK IYSATTSQSD YLQKISLKML TMETKSFNVA TNSLPSNFAG HSKKSRNDKK SLARKKALRS
101: RDRVVCQHLD LDDVVPRSHW MMLCTHECLF SMQANGPRFD ERSCEGLVAT QADSRRHAD

Best Arabidopsis Sequence Match ( AT1G15780.1 )
(BLAST)

0001: MDNNNWRPSL PNGEPAMDTG DWRTQLPPDS RQKIVNKIME TLKKHLPFSG PEGINELRRI AARFEEKIFS GALNQTDYLR KISMKMLTME TKSQNAAGSS
0101: AAIPAANNGT SIDSIPTNQG QLLPGSLSTN QSQAPQPLLS QTMQNNTASG MTGSTALPSS MPPVSSITNN NTTSVVNQNA NMQNVAGMLQ DSSGQHGLSS
0201: NMFSGPQRQM LGRPHAMSSQ QQQQPYLYQQ QLQQQLLKQN FQSGNVPNPN SLLPSHIQQQ QQNVLQPNQL HSSQQPGVPT SATQPSTVNS APLQGLHTNQ
0301: QSSPQLSSQQ TTQSMLRQHQ SSMLRQHPQS QQASGIHQQQ SSLPQQSISP LQQQPTQLMR QQAANSSGIQ QKQMMGQHVV GDMQQQHQQR LLNQQNNVMN
0401: IQQQQSQQQP LQQPQQQQKQ QPPAQQQLMS QQNSLQATHQ NPLGTQSNVA GLQQPQQQML NSQVGNSSLQ NNQHSVHMLS QPTVGLQRTH QAGHGLYSSQ
0501: GQQSQNQPSQ QQMMPQLQSH HQQLGLQQQP NLLQQDVQQR LQASGQVTGS LLPPQNVVDQ QRQLYQSQRT LPEMPSSSLD STAQTESANG GDWQEEVYQK
0601: IKSMKETYLP DLNEIYQRVA AKLQQDSMPQ QQRSDQLEKL RQFKTMLERM IQFLSVSKSN IMPALKDKVA YYEKQIIGFL NMHRPRKPVQ QGQLPQSQMQ
0701: PMQQPQSQTV QDQSHDNQTN PQMQSMSMQG AGPRAQQSSM TNMQSNVLSS RPGVSAPQQN IPSSIPASSL ESGQGNTLNN GQQVAMGSMQ QNTSQLVNNS
0801: SASAQSGLST LQSNVNQPQL SSSLLQHQHL KQQQDQQMQL KQQFQQRQMQ QQQLQARQQQ QQQQLQARQQ AAQLQQMNDM NDLTSRQGMN VSRGMFQQHS
0901: MQGQRANYPL QQLKPGAVSS PQLLQGASPQ MSQHLSPQVD QKNTVNKMGT PLQPANSPFV VPSPSSTPLA PSPMQVDSEK PGSSSLSMGN IARQQATGMQ
1001: GVVQSLAIGT PGISASPLLQ EFTSPDGNIL NSSTITSGKP SATELPIERL IRAVKSISPQ ALSSAVSDIG SVVSMVDRIA GSAPGNGSRA SVGEDLVAMT
1101: KCRLQARNFM TQEGMMATKK MKRHTTAMPL SVASLGGSVG DNYKQFAGSE TSDLESTATS DGKKARTETE HALLEEIKEI NQRLIDTVVE ISDDEDAADP
1201: SEVAISSIGC EGTTVRFSFI AVSLSPALKA HLSSTQMSPI QPLRLLVPCS YPNGSPSLLD KLPVETSKEN EDLSSKAMAR FNILLRSLSQ PMSLKDIAKT
1301: WDACARAVIC EYAQQFGGGT FSSKYGTWEK YVAAS

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Oth /.../aryotes - 38082 (source: NCBI BLink). [Source:TAIR;Acc:AT1G15780]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.