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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH44505 Soybean nucleus 94.07 76.61
VIT_13s0067g02320.t01 Wine grape cytosol 7.91 70.0
Solyc01g057460.2.1 Tomato cytosol 5.74 65.59
KRH08039 Soybean cytosol 5.08 64.29
KRH23611 Soybean nucleus 73.45 58.91
KRH09691 Soybean nucleus 74.2 58.54
KRH45070 Soybean cytosol 5.65 58.25
KRH08040 Soybean cytosol 5.56 57.28
VIT_00s0273g00040.t01 Wine grape nucleus 4.99 56.99
VIT_15s0045g00200.t01 Wine grape nucleus 4.71 54.35
VIT_19s0140g00050.t01 Wine grape nucleus 4.52 52.75
VIT_00s0239g00150.t01 Wine grape cytosol 4.99 52.48
VIT_09s0070g00940.t01 Wine grape nucleus 5.18 51.89
VIT_13s0067g02180.t01 Wine grape mitochondrion, nucleus 6.69 49.31
VIT_00s0239g00070.t01 Wine grape cytosol 5.27 49.12
VIT_00s0239g00010.t01 Wine grape cytosol 5.18 48.67
VIT_00s0198g00120.t01 Wine grape nucleus 4.24 44.55
VIT_13s0067g02040.t01 Wine grape cytosol, mitochondrion, nucleus, peroxisome, plastid 6.4 44.44
PGSC0003DMT400022608 Potato cytosol 7.44 43.89
VIT_09s0070g00870.t01 Wine grape extracellular 4.43 41.23
AT1G15780.2 Thale cress nucleus 53.01 41.22
PGSC0003DMT400019244 Potato cytosol 5.74 40.67
VIT_00s0198g00090.t01 Wine grape cytosol 5.18 40.15
KRH45069 Soybean nucleus 6.31 40.12
Bra026749.1-P Field mustard nucleus 47.27 40.06
KRH52764 Soybean nucleus 9.13 39.75
Bra016651.1-P Field mustard endoplasmic reticulum, vacuole 47.74 37.78
Bra026108.1-P Field mustard nucleus 38.79 36.65
VIT_00s0173g00220.t01 Wine grape nucleus 5.37 35.85
AT1G15790.3 Thale cress cytosol 6.31 35.45
PGSC0003DMT400027566 Potato mitochondrion, nucleus 7.72 33.88
Solyc04g009500.2.1 Tomato nucleus 18.36 33.85
Bra026102.1-P Field mustard cytosol 4.99 33.33
Bra028029.1-P Field mustard cytosol 6.59 32.56
Bra026104.1-P Field mustard mitochondrion 5.37 28.64
VIT_13s0067g02200.t01 Wine grape mitochondrion 5.08 28.42
GSMUA_Achr11P... Banana nucleus 17.42 24.54
Bra026106.1-P Field mustard nucleus 26.93 23.44
VIT_00s0169g00040.t01 Wine grape cytosol 5.08 21.18
Bra026103.1-P Field mustard cytosol 6.4 19.94
KRH20610 Soybean cytosol 10.64 16.1
Protein Annotations
Gene3D:1.10.246.20MapMan:15.3.3.3.5UniProt:A0A0R0IYI6EMBL:ACUP02004149ncoils:CoilEnsemblPlantsGene:GLYMA_07G027800
GO:GO:0003674GO:GO:0003712GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987InterPro:KIX_dom_sfEnsemblPlants:KRH47405ProteinID:KRH47405ProteinID:KRH47405.1
InterPro:MED15_KIXPFAM:PF16987PANTHER:PTHR33137PANTHER:PTHR33137:SF4SUPFAM:SSF47040UniParc:UPI0006EDDCDD
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr7:+:2201136..2220876
Molecular Weight (calculated)
117758.0 Da
IEP (calculated)
10.416
GRAVY (calculated)
-0.863
Length
1062 amino acids
Sequence
(BLAST)
0001: MDSNNWRPNQ GTNPTMDTSD WRAQLPIDSR QRIVNKIMKT LKKHLAVSGP DGLHELRKIA QRFEDKIFTA ATSQTDYLRK ISLKMLTMET KSQNTLANNM
0101: PPNQVGPSHK PPDQGLVLQS QVHNLGQQHS IPLPGQLQPH QQLLSQNVQN NVASQPNLPP VSSLAQTPSQ NIVQNSNIQN ITGPNSVGTT ISQNSNLQNM
0201: FPGSQRQMPG RQQIVPPQNS QQYLYQQQFK QKLQLQSQMQ QQQQNLLQPN QLQSSQQSIM QTSSVMQPSM MQTSSLSSIP QNQQSTNVQQ PMQSMPQQHS
0301: QVIRHQQQTA VTHQPSLPSQ QQQQLMGHQP NTTNMQHAQM LGQQNNVGDI QQPQRMLSQQ SNLTNLQQRQ QLINQQNNPA NIHQQQFGNN GPGLQQQHLL
0401: GHESGNADMQ TSHHSTHMLQ QPKVPMQQQS QQNTSNLLLP HSQQPQPLGS QQQLMPQIHT QSAQLQQQLG LQQQPNPSQR DMQQRIQASG SLLQQQNVLD
0501: QKKQLYQTQR TLPETSATSL DSTAQTAQPS GADWQEEVYR KLQTMKESYL PEMNEMYQKI ANKLQQHDSL PQQPKSDQID KLRAYKTMLE RMMALLQIPK
0601: NNILPNFKEK LGSYEKQIIN LINSNRPRKG MNSVQAGQLP PTHMSSMQQP QSQVTQVHSH ENQMNPQLQS TNLQGSVPTM QQNNIASLQH NALAGVSTGQ
0701: QNMMNSMQPV TNLDSGHGNS MNSLQQVPMS SLQQNPVSTP QQTNINSLPS QGGANMIQPN ALQSGSSALQ HQLKHQQEQQ MLQSQQFKQQ YQQRQQLMQR
0801: QQLLQQQQLH HPAKPQLSSQ LQTHQMPQLH QMNDINDIKM RQGMGVKSGV FQQHLTSGQH STYSHQQLKQ GSAFPVSSPQ LLQAASPQIQ QHSSPQVDQQ
0901: NHLPSKAKVT TPLQSSNSPF VGPTPSPPLA PSPMPGESEK PIPCVSSISN AANIGHQQTG GAIAPAQSLA IGTPGISASP LLAEFSAPDG AHGNALAATS
1001: GKSTVTEQPL ERLINAVKSM SSKALSAAVM DIGSVVSMND RIAGSAPGNG SRAAVVRIWF HD
Best Arabidopsis Sequence Match ( AT1G15790.4 )
(BLAST)
001: MDTTGDWRTQ FPSASRSRIV NKIMETQLKQ LPFIRPEGTN ELRKIAVRFE EKLFNNASNQ TEYLRQICMK MLNMETKSQN AAGSSSADDN TPPLVPEPSV
101: PNNEPAVNTG DWRTQQPQDS RQKNINALLD TLKKIVPHSG KEGIDELMRI AVSLEELIFN SAINQEDYLG KISLKMRTM
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (sour /.../BI BLink). [Source:TAIR;Acc:AT1G15790]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.