Factsheet for VIT_00s0239g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0273g00040.t01	Wine grape	nucleus	65.49	79.57
VIT_15s0045g00200.t01	Wine grape	nucleus	62.83	77.17
VIT_00s0239g00150.t01	Wine grape	cytosol	67.26	75.25
VIT_09s0070g00940.t01	Wine grape	nucleus	67.26	71.7
VIT_19s0140g00050.t01	Wine grape	nucleus	57.52	71.43
VIT_00s0239g00070.t01	Wine grape	cytosol	68.14	67.54
VIT_00s0198g00120.t01	Wine grape	nucleus	58.41	65.35
VIT_09s0070g00870.t01	Wine grape	extracellular	59.29	58.77
VIT_13s0067g02180.t01	Wine grape	mitochondrion, nucleus	68.14	53.47
VIT_13s0067g02320.t01	Wine grape	cytosol	54.87	51.67
VIT_13s0067g02270.t01	Wine grape	cytosol	43.36	51.58
VIT_00s0198g00090.t01	Wine grape	cytosol	61.95	51.09
Solyc01g057460.2.1	Tomato	cytosol	41.59	50.54
VIT_13s0067g02230.t01	Wine grape	mitochondrion	39.82	49.45
VIT_00s0173g00220.t01	Wine grape	nucleus	67.26	47.8
VIT_13s0067g02040.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome, plastid	60.18	44.44
VIT_00s0169g00040.t01	Wine grape	cytosol	68.14	30.2
VIT_13s0067g02200.t01	Wine grape	mitochondrion	50.44	30.0
PGSC0003DMT400019244	Potato	cytosol	37.17	28.0
PGSC0003DMT400022608	Potato	cytosol	34.51	21.67
AT1G15790.3	Thale cress	cytosol	33.63	20.11
Bra026102.1-P	Field mustard	cytosol	27.43	19.5
Bra028029.1-P	Field mustard	cytosol	34.51	18.14
Bra026104.1-P	Field mustard	mitochondrion	30.97	17.59
PGSC0003DMT400027566	Potato	mitochondrion, nucleus	27.43	12.81
Bra026103.1-P	Field mustard	cytosol	30.97	10.26
VIT_07s0031g02580.t01	Wine grape	nucleus	30.09	9.02
Solyc04g009500.2.1	Tomato	nucleus	45.13	8.85
VIT_08s0040g00740.t01	Wine grape	nucleus	21.24	5.9
KRH47405	Soybean	nucleus	48.67	5.18
KRH09691	Soybean	nucleus	53.1	4.46
KRH23611	Soybean	nucleus	52.21	4.46
KRH44505	Soybean	nucleus	51.33	4.45
Bra026749.1-P	Field mustard	nucleus	41.59	3.75
Bra026106.1-P	Field mustard	nucleus	38.94	3.61
AT1G15780.2	Thale cress	nucleus	43.36	3.59
Bra016651.1-P	Field mustard	endoplasmic reticulum, vacuole	42.48	3.58
Bra026108.1-P	Field mustard	nucleus	21.24	2.14
VIT_05s0102g01050.t01	Wine grape	plastid	3.54	1.3
VIT_07s0031g02570.t01	Wine grape	cytosol	6.19	0.9
GSMUA_Achr11P...	Banana	nucleus	3.54	0.53
VIT_13s0047g01240.t01	Wine grape	nucleus	3.54	0.34
VIT_08s0040g00730.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

ArrayExpress:VIT_00s0239g00010	EMBL:FN596023	EnsemblPlants:VIT_00s0239g00010.t01	EnsemblPlantsGene:VIT_00s0239g00010	Gene3D:1.10.246.20	InterPro:MED15_KIX
PANTHER:PTHR33137	PANTHER:PTHR33137:SF4	PFAM:PF16987	ProteinID:CBI33077	ProteinID:CBI33077.3	UniParc:UPI0001BE3C83
UniProt:D7TRF3	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:16343410..16355392

Molecular Weight (calculated)

13122.9 Da

IEP (calculated)

10.820

GRAVY (calculated)

-0.742

Length

113 amino acids

Sequence
(BLAST)

001: MDGDDWKPHF RLIHAIGLST KWDMDTLKRH LPISRLEGLH ELRKITERFE ENIYFSATSQ SNYLRKISLK MLTMETKSFN AATSSLPSNF AGHSKKSLND
101: KKSPARKKAL KFR

Best Arabidopsis Sequence Match ( AT1G15780.1 )
(BLAST)

0001: MDNNNWRPSL PNGEPAMDTG DWRTQLPPDS RQKIVNKIME TLKKHLPFSG PEGINELRRI AARFEEKIFS GALNQTDYLR KISMKMLTME TKSQNAAGSS
0101: AAIPAANNGT SIDSIPTNQG QLLPGSLSTN QSQAPQPLLS QTMQNNTASG MTGSTALPSS MPPVSSITNN NTTSVVNQNA NMQNVAGMLQ DSSGQHGLSS
0201: NMFSGPQRQM LGRPHAMSSQ QQQQPYLYQQ QLQQQLLKQN FQSGNVPNPN SLLPSHIQQQ QQNVLQPNQL HSSQQPGVPT SATQPSTVNS APLQGLHTNQ
0301: QSSPQLSSQQ TTQSMLRQHQ SSMLRQHPQS QQASGIHQQQ SSLPQQSISP LQQQPTQLMR QQAANSSGIQ QKQMMGQHVV GDMQQQHQQR LLNQQNNVMN
0401: IQQQQSQQQP LQQPQQQQKQ QPPAQQQLMS QQNSLQATHQ NPLGTQSNVA GLQQPQQQML NSQVGNSSLQ NNQHSVHMLS QPTVGLQRTH QAGHGLYSSQ
0501: GQQSQNQPSQ QQMMPQLQSH HQQLGLQQQP NLLQQDVQQR LQASGQVTGS LLPPQNVVDQ QRQLYQSQRT LPEMPSSSLD STAQTESANG GDWQEEVYQK
0601: IKSMKETYLP DLNEIYQRVA AKLQQDSMPQ QQRSDQLEKL RQFKTMLERM IQFLSVSKSN IMPALKDKVA YYEKQIIGFL NMHRPRKPVQ QGQLPQSQMQ
0701: PMQQPQSQTV QDQSHDNQTN PQMQSMSMQG AGPRAQQSSM TNMQSNVLSS RPGVSAPQQN IPSSIPASSL ESGQGNTLNN GQQVAMGSMQ QNTSQLVNNS
0801: SASAQSGLST LQSNVNQPQL SSSLLQHQHL KQQQDQQMQL KQQFQQRQMQ QQQLQARQQQ QQQQLQARQQ AAQLQQMNDM NDLTSRQGMN VSRGMFQQHS
0901: MQGQRANYPL QQLKPGAVSS PQLLQGASPQ MSQHLSPQVD QKNTVNKMGT PLQPANSPFV VPSPSSTPLA PSPMQVDSEK PGSSSLSMGN IARQQATGMQ
1001: GVVQSLAIGT PGISASPLLQ EFTSPDGNIL NSSTITSGKP SATELPIERL IRAVKSISPQ ALSSAVSDIG SVVSMVDRIA GSAPGNGSRA SVGEDLVAMT
1101: KCRLQARNFM TQEGMMATKK MKRHTTAMPL SVASLGGSVG DNYKQFAGSE TSDLESTATS DGKKARTETE HALLEEIKEI NQRLIDTVVE ISDDEDAADP
1201: SEVAISSIGC EGTTVRFSFI AVSLSPALKA HLSSTQMSPI QPLRLLVPCS YPNGSPSLLD KLPVETSKEN EDLSSKAMAR FNILLRSLSQ PMSLKDIAKT
1301: WDACARAVIC EYAQQFGGGT FSSKYGTWEK YVAAS

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Oth /.../aryotes - 38082 (source: NCBI BLink). [Source:TAIR;Acc:AT1G15780]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.