Factsheet for VIT_00s0239g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0239g00150.t01	Wine grape	cytosol	72.81	82.18
VIT_00s0273g00040.t01	Wine grape	nucleus	66.67	81.72
VIT_15s0045g00200.t01	Wine grape	nucleus	65.79	81.52
VIT_09s0070g00940.t01	Wine grape	nucleus	73.68	79.25
VIT_19s0140g00050.t01	Wine grape	nucleus	61.4	76.92
VIT_00s0198g00120.t01	Wine grape	nucleus	62.28	70.3
VIT_00s0239g00010.t01	Wine grape	cytosol	67.54	68.14
VIT_09s0070g00870.t01	Wine grape	extracellular	61.4	61.4
VIT_13s0067g02230.t01	Wine grape	mitochondrion	45.61	57.14
VIT_00s0198g00090.t01	Wine grape	cytosol	67.54	56.2
VIT_13s0067g02180.t01	Wine grape	mitochondrion, nucleus	69.3	54.86
VIT_13s0067g02270.t01	Wine grape	cytosol	45.61	54.74
VIT_00s0173g00220.t01	Wine grape	nucleus	71.05	50.94
VIT_13s0067g02320.t01	Wine grape	cytosol	53.51	50.83
Solyc01g057460.2.1	Tomato	cytosol	40.35	49.46
VIT_13s0067g02040.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome, plastid	59.65	44.44
VIT_00s0169g00040.t01	Wine grape	cytosol	73.68	32.94
VIT_13s0067g02200.t01	Wine grape	mitochondrion	49.12	29.47
PGSC0003DMT400019244	Potato	cytosol	38.6	29.33
AT1G15790.3	Thale cress	cytosol	32.46	19.58
PGSC0003DMT400022608	Potato	cytosol	30.7	19.44
Bra028029.1-P	Field mustard	cytosol	35.09	18.6
Bra026102.1-P	Field mustard	cytosol	25.44	18.24
Bra026104.1-P	Field mustard	mitochondrion	31.58	18.09
PGSC0003DMT400027566	Potato	mitochondrion, nucleus	27.19	12.81
VIT_07s0031g02580.t01	Wine grape	nucleus	33.33	10.08
Bra026103.1-P	Field mustard	cytosol	27.19	9.09
Solyc04g009500.2.1	Tomato	nucleus	44.74	8.85
VIT_08s0040g00740.t01	Wine grape	nucleus	23.68	6.63
KRH47405	Soybean	nucleus	49.12	5.27
KRH44505	Soybean	nucleus	51.75	4.52
KRH09691	Soybean	nucleus	50.88	4.31
KRH23611	Soybean	nucleus	50.0	4.31
Bra026106.1-P	Field mustard	nucleus	41.23	3.85
Bra026749.1-P	Field mustard	nucleus	40.35	3.67
Bra016651.1-P	Field mustard	endoplasmic reticulum, vacuole	42.98	3.65
AT1G15780.2	Thale cress	nucleus	42.98	3.59
Bra026108.1-P	Field mustard	nucleus	22.81	2.31
VIT_05s0102g01050.t01	Wine grape	plastid	3.51	1.3
VIT_07s0031g02570.t01	Wine grape	cytosol	4.39	0.64
GSMUA_Achr11P...	Banana	nucleus	2.63	0.4
VIT_13s0047g01240.t01	Wine grape	nucleus	2.63	0.25
VIT_08s0040g00730.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

ArrayExpress:VIT_00s0239g00070	EMBL:FN596023	EnsemblPlants:VIT_00s0239g00070.t01	EnsemblPlantsGene:VIT_00s0239g00070	Gene3D:1.10.246.20	InterPro:MED15_KIX
PANTHER:PTHR33137	PANTHER:PTHR33137:SF4	PFAM:PF16987	ProteinID:CCB57305	ProteinID:CCB57305.1	UniParc:UPI0002109387
UniProt:F6HRJ7	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:16392071..16401142

Molecular Weight (calculated)

12821.5 Da

IEP (calculated)

10.881

GRAVY (calculated)

-0.700

Length

114 amino acids

Sequence
(BLAST)

001: MEWGVEVNVA MYSHAKVGEN GFNGMDTLKR HLPISRPTGL HELRKIVERF EEKIYSAATS QSDSLRKISL KMLTMETKSF NAATNSLPSN SAGHSKKSPN
101: DKKFLARKKA LRSR

Best Arabidopsis Sequence Match ( AT1G15780.3 )
(BLAST)

0001: MNFVDVIKFA YFEFLDSRSE NLMDNNNWRP SLPNGEPAMD TGDWRTQLPP DSRQKIVNKI METLKKHLPF SGPEGINELR RIAARFEEKI FSGALNQTDY
0101: LRKISMKMLT METKSQNAAG SSAAIPAANN GTSIDSIPTN QGQLLPGSLS TNQSQAPQPL LSQTMQNNTA SGMTGSTALP SSMPPVSSIT NNNTTSVVNQ
0201: NANMQNVAGM LQDSSGQHGL SSNMFSGPQR QMLGRPHAMS SQQQQQPYLY QQQLQQQLLK QNFQSGNVPN PNSLLPSHIQ QQQQNVLQPN QLHSSQQPGV
0301: PTSATQPSTV NSAPLQGLHT NQQSSPQLSS QQTTQSMLRQ HQSSMLRQHP QSQQASGIHQ QQSSLPQQSI SPLQQQPTQL MRQQAANSSG IQQKQMMGQH
0401: VVGDMQQQHQ QRLLNQQNNV MNIQQQQSQQ QPLQQPQQQQ KQQPPAQQQL MSQQNSLQAT HQNPLGTQSN VAGLQQPQQQ MLNSQVGNSS LQNNQHSVHM
0501: LSQPTVGLQR THQAGHGLYS SQGQQSQNQP SQQQMMPQLQ SHHQQLGLQQ QPNLLQQDVQ QRLQASGQVT GSLLPPQNVV DQQRQLYQSQ RTLPEMPSSS
0601: LDSTAQTESA NGGDWQEEVY QKIKSMKETY LPDLNEIYQR VAAKLQQDSM PQQQRSDQLE KLRQFKTMLE RMIQFLSVSK SNIMPALKDK VAYYEKQIIG
0701: FLNMHRPRKP VQQGQLPQSQ MQPMQQPQSQ TVQDQSHDNQ TNPQMQSMSM QGAGPRAQQS SMTNMQSNVL SSRPGVSAPQ QNIPSSIPAS SLESGQGNTL
0801: NNGQQVAMGS MQQNTSQLVN NSSASAQSGL STLQSNVNQP QLSSSLLQHQ HLKQQQDQQM QLKQQFQQRQ MQQQQLQARQ QQQQQQLQAR QQAAQLQQMN
0901: DMNDLTSRQG MNVSRGMFQQ HSMQGQRANY PLQQLKPGAV SSPQLLQGAS PQMSQHLSPQ VDQKNTVNKM GTPLQPANSP FVVPSPSSTP LAPSPMQVDS
1001: EKPGSSSLSM GNIARQQATG MQGVVQSLAI GTPGISASPL LQEFTSPDGN ILNSSTITSG KPSATELPIE RLIRAVKSIS PQALSSAVSD IGSVVSMVDR
1101: IAGSAPGNGS RASVGEDLVA MTKCRLQARN FMTQEGMMAT KKMKRHTTAM PLSVASLGGS VGDNYKQFAG SETSDLESTA TSDGKKARTE TEHALLEEIK
1201: EINQRLIDTV VEISDDEDAA DPSEVAISSI GCEGTTVRFS FIAVSLSPAL KAHLSSTQMS PIQPLRLLVP CSYPNGSPSL LDKLPVETSK ENEDLSSKAM
1301: ARFNILLRSL SQPMSLKDIA KTWDACARAV ICEYAQQFGG GTFSSKYGTW EKYVAAS

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Oth /.../aryotes - 38082 (source: NCBI BLink). [Source:TAIR;Acc:AT1G15780]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.