Factsheet for VIT_19s0140g00050.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0273g00040.t01	Wine grape	nucleus	76.92	75.27
VIT_00s0198g00120.t01	Wine grape	nucleus	83.52	75.25
VIT_15s0045g00200.t01	Wine grape	nucleus	74.73	73.91
VIT_00s0239g00150.t01	Wine grape	cytosol	75.82	68.32
VIT_09s0070g00940.t01	Wine grape	nucleus	78.02	66.98
VIT_09s0070g00870.t01	Wine grape	extracellular	83.52	66.67
VIT_00s0239g00070.t01	Wine grape	cytosol	76.92	61.4
VIT_00s0239g00010.t01	Wine grape	cytosol	71.43	57.52
VIT_00s0198g00090.t01	Wine grape	cytosol	83.52	55.47
VIT_00s0173g00220.t01	Wine grape	nucleus	87.91	50.31
VIT_13s0067g02180.t01	Wine grape	mitochondrion, nucleus	70.33	44.44
VIT_13s0067g02230.t01	Wine grape	mitochondrion	43.96	43.96
VIT_13s0067g02270.t01	Wine grape	cytosol	43.96	42.11
VIT_13s0067g02320.t01	Wine grape	cytosol	54.95	41.67
VIT_13s0067g02040.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome, plastid	67.03	39.87
Solyc01g057460.2.1	Tomato	cytosol	40.66	39.78
VIT_00s0169g00040.t01	Wine grape	cytosol	81.32	29.02
VIT_13s0067g02200.t01	Wine grape	mitochondrion	50.55	24.21
PGSC0003DMT400019244	Potato	cytosol	38.46	23.33
Bra026102.1-P	Field mustard	cytosol	34.07	19.5
PGSC0003DMT400022608	Potato	cytosol	32.97	16.67
AT1G15790.3	Thale cress	cytosol	34.07	16.4
Bra028029.1-P	Field mustard	cytosol	38.46	16.28
Bra026104.1-P	Field mustard	mitochondrion	31.87	14.57
PGSC0003DMT400027566	Potato	mitochondrion, nucleus	35.16	13.22
VIT_07s0031g02580.t01	Wine grape	nucleus	32.97	7.96
Bra026103.1-P	Field mustard	cytosol	28.57	7.62
Solyc04g009500.2.1	Tomato	nucleus	46.15	7.29
VIT_08s0040g00740.t01	Wine grape	nucleus	23.08	5.16
KRH47405	Soybean	nucleus	52.75	4.52
KRH44505	Soybean	nucleus	56.04	3.91
KRH23611	Soybean	nucleus	52.75	3.63
KRH09691	Soybean	nucleus	52.75	3.57
Bra016651.1-P	Field mustard	endoplasmic reticulum, vacuole	48.35	3.28
AT1G15780.2	Thale cress	nucleus	48.35	3.22
Bra026106.1-P	Field mustard	nucleus	42.86	3.2
Bra026749.1-P	Field mustard	nucleus	43.96	3.19
Bra026108.1-P	Field mustard	nucleus	29.67	2.4
VIT_05s0102g01050.t01	Wine grape	plastid	4.4	1.3
VIT_07s0031g02570.t01	Wine grape	cytosol	5.49	0.64
GSMUA_Achr11P...	Banana	nucleus	4.4	0.53
VIT_13s0047g01240.t01	Wine grape	nucleus	5.49	0.42
VIT_08s0040g00730.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

ArrayExpress:VIT_19s0140g00050	EMBL:FN596014	EnsemblPlants:VIT_19s0140g00050.t01	EnsemblPlantsGene:VIT_19s0140g00050	Gene3D:1.10.246.20	InterPro:MED15_KIX
PANTHER:PTHR33137	PANTHER:PTHR33137:SF4	PFAM:PF16987	ProteinID:CCB57262	ProteinID:CCB57262.1	UniParc:UPI0002108E6F
UniProt:F6HRF4	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr19:+:15309356..15311146

Molecular Weight (calculated)

10286.4 Da

IEP (calculated)

10.694

GRAVY (calculated)

-0.988

Length

91 amino acids

Sequence
(BLAST)

1: MIIKKQELEK SMDTLKSHLP ISGPEGLHEL RKIVERFEEK IYSTATSQML TMETKSFNAT TNSLPSNSAG HNKKSPNDKK SPTRKKALRS K

Best Arabidopsis Sequence Match ( AT1G15780.1 )
(BLAST)

0001: MDNNNWRPSL PNGEPAMDTG DWRTQLPPDS RQKIVNKIME TLKKHLPFSG PEGINELRRI AARFEEKIFS GALNQTDYLR KISMKMLTME TKSQNAAGSS
0101: AAIPAANNGT SIDSIPTNQG QLLPGSLSTN QSQAPQPLLS QTMQNNTASG MTGSTALPSS MPPVSSITNN NTTSVVNQNA NMQNVAGMLQ DSSGQHGLSS
0201: NMFSGPQRQM LGRPHAMSSQ QQQQPYLYQQ QLQQQLLKQN FQSGNVPNPN SLLPSHIQQQ QQNVLQPNQL HSSQQPGVPT SATQPSTVNS APLQGLHTNQ
0301: QSSPQLSSQQ TTQSMLRQHQ SSMLRQHPQS QQASGIHQQQ SSLPQQSISP LQQQPTQLMR QQAANSSGIQ QKQMMGQHVV GDMQQQHQQR LLNQQNNVMN
0401: IQQQQSQQQP LQQPQQQQKQ QPPAQQQLMS QQNSLQATHQ NPLGTQSNVA GLQQPQQQML NSQVGNSSLQ NNQHSVHMLS QPTVGLQRTH QAGHGLYSSQ
0501: GQQSQNQPSQ QQMMPQLQSH HQQLGLQQQP NLLQQDVQQR LQASGQVTGS LLPPQNVVDQ QRQLYQSQRT LPEMPSSSLD STAQTESANG GDWQEEVYQK
0601: IKSMKETYLP DLNEIYQRVA AKLQQDSMPQ QQRSDQLEKL RQFKTMLERM IQFLSVSKSN IMPALKDKVA YYEKQIIGFL NMHRPRKPVQ QGQLPQSQMQ
0701: PMQQPQSQTV QDQSHDNQTN PQMQSMSMQG AGPRAQQSSM TNMQSNVLSS RPGVSAPQQN IPSSIPASSL ESGQGNTLNN GQQVAMGSMQ QNTSQLVNNS
0801: SASAQSGLST LQSNVNQPQL SSSLLQHQHL KQQQDQQMQL KQQFQQRQMQ QQQLQARQQQ QQQQLQARQQ AAQLQQMNDM NDLTSRQGMN VSRGMFQQHS
0901: MQGQRANYPL QQLKPGAVSS PQLLQGASPQ MSQHLSPQVD QKNTVNKMGT PLQPANSPFV VPSPSSTPLA PSPMQVDSEK PGSSSLSMGN IARQQATGMQ
1001: GVVQSLAIGT PGISASPLLQ EFTSPDGNIL NSSTITSGKP SATELPIERL IRAVKSISPQ ALSSAVSDIG SVVSMVDRIA GSAPGNGSRA SVGEDLVAMT
1101: KCRLQARNFM TQEGMMATKK MKRHTTAMPL SVASLGGSVG DNYKQFAGSE TSDLESTATS DGKKARTETE HALLEEIKEI NQRLIDTVVE ISDDEDAADP
1201: SEVAISSIGC EGTTVRFSFI AVSLSPALKA HLSSTQMSPI QPLRLLVPCS YPNGSPSLLD KLPVETSKEN EDLSSKAMAR FNILLRSLSQ PMSLKDIAKT
1301: WDACARAVIC EYAQQFGGGT FSSKYGTWEK YVAAS

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Oth /.../aryotes - 38082 (source: NCBI BLink). [Source:TAIR;Acc:AT1G15780]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.