Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_05s0102g01050.t01 | Wine grape | plastid | 22.24 | 85.99 |
| KRH08039 | Soybean | cytosol | 4.3 | 60.71 |
| VIT_08s0040g00730.t01 | Wine grape | cytosol | 14.66 | 55.59 |
| Bra026749.1-P | Field mustard | nucleus | 51.64 | 48.92 |
| Bra026108.1-P | Field mustard | nucleus | 46.17 | 48.75 |
| AT1G15780.2 | Thale cress | nucleus | 53.75 | 46.71 |
| Bra016651.1-P | Field mustard | endoplasmic reticulum, vacuole | 51.39 | 45.45 |
| GSMUA_Achr11P... | Banana | nucleus | 25.11 | 39.52 |
| VIT_07s0031g02570.t01 | Wine grape | cytosol | 23.42 | 35.64 |
| CDY61380 | Canola | extracellular, vacuole | 10.45 | 30.24 |
| Bra026106.1-P | Field mustard | nucleus | 19.46 | 18.93 |
| VIT_08s0040g00740.t01 | Wine grape | nucleus | 5.73 | 16.71 |
| VIT_07s0031g02580.t01 | Wine grape | nucleus | 5.14 | 16.18 |
| AT1G15790.3 | Thale cress | cytosol | 2.02 | 12.7 |
| Bra026104.1-P | Field mustard | mitochondrion | 1.68 | 10.05 |
| Bra028029.1-P | Field mustard | cytosol | 1.68 | 9.3 |
| Bra026103.1-P | Field mustard | cytosol | 2.02 | 7.04 |
| VIT_00s0173g00220.t01 | Wine grape | nucleus | 0.84 | 6.29 |
| VIT_09s0070g00870.t01 | Wine grape | extracellular | 0.59 | 6.14 |
| VIT_00s0198g00120.t01 | Wine grape | nucleus | 0.51 | 5.94 |
| VIT_00s0198g00090.t01 | Wine grape | cytosol | 0.67 | 5.84 |
| Bra026102.1-P | Field mustard | cytosol | 0.76 | 5.66 |
| VIT_19s0140g00050.t01 | Wine grape | nucleus | 0.42 | 5.49 |
| VIT_00s0273g00040.t01 | Wine grape | nucleus | 0.34 | 4.3 |
| VIT_00s0239g00150.t01 | Wine grape | cytosol | 0.34 | 3.96 |
| VIT_00s0239g00010.t01 | Wine grape | cytosol | 0.34 | 3.54 |
| VIT_13s0067g02270.t01 | Wine grape | cytosol | 0.25 | 3.16 |
| VIT_09s0070g00940.t01 | Wine grape | nucleus | 0.25 | 2.83 |
| VIT_00s0239g00070.t01 | Wine grape | cytosol | 0.25 | 2.63 |
| VIT_13s0067g02320.t01 | Wine grape | cytosol | 0.25 | 2.5 |
| VIT_13s0067g02180.t01 | Wine grape | mitochondrion, nucleus | 0.25 | 2.08 |
| VIT_13s0067g02040.t01 | Wine grape | cytosol, mitochondrion, nucleus, peroxisome, plastid | 0.25 | 1.96 |
| VIT_00s0169g00040.t01 | Wine grape | cytosol | 0.34 | 1.57 |
| VIT_13s0067g02230.t01 | Wine grape | mitochondrion | 0.08 | 1.1 |
| VIT_15s0045g00200.t01 | Wine grape | nucleus | 0.08 | 1.09 |
| VIT_13s0067g02200.t01 | Wine grape | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| EntrezGene:100264243 | wikigene:100264243 | MapMan:15.3.3.3.5 | ProteinID:CCB52142 | ProteinID:CCB52142.1 | ncoils:Coil |
| UniProt:F6HIX6 | EMBL:FN595767 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005975 | GO:GO:0005992 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EntrezGene:LOC100264243 | wikigene:LOC100264243 |
| PANTHER:PTHR33137 | PANTHER:PTHR33137:SF9 | TIGR:TC52265 | TIGR:TC56554 | UniParc:UPI0002108AC5 | ArrayExpress:VIT_13s0047g01240 |
| EnsemblPlantsGene:VIT_13s0047g01240 | EnsemblPlants:VIT_13s0047g01240.t01 | RefSeq:XP_002271720 | RefSeq:XP_002271720.2 | SEG:seg | : |
Description
No Description!
Coordinates
chr13:-:18401755..18423404
Molecular Weight (calculated)
131668.0 Da
IEP (calculated)
9.930
GRAVY (calculated)
-0.849
Length
1187 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGQGVPSNMF ANSQRQSQGR PQVVPQQQQQ QSQSSQQYIY QQQLQHHLLK QKYQQQQQQQ TLLQSNQFQS SQQSVMQTSS GMQSAPLSGL QQNQPSSVQQ
0101: SSQSVLQQHP PAVLRQQQQP QQTPVMHQQQ TSMTQQPILP SQQQQQLIGQ PPNATTMQSN QLIGQQNSFS DLQQQQQQQQ QRLLSQQNNL PNLQQQQQQQ
0201: QHQLMAQQSN LSNIHQQQLG HQSNVSALQQ QQQMLGTQSG NPSMQTNQHP VHILQQSKVP VQQQTQQGVS NLLATQGQQS QQQPSQQQLM SQFQSQSTQL
0301: QPQPNSLQRD MQQRLQTSGA LLQTQNVIDQ QKQLFQSQRA LPEASSTSLD STAQTGTINV GDWQEEVYQK IKRMKEMYLP DLNEMHQKIA AKLQQHDSLP
0401: QQPKTEQLEK LKIFKAMLER MITVLQLSKN SITPNFKEKL IGYEKQIVSF INTHRPRKPV PPLQHGQSSV SHMHSMQQPQ QSQSQLSQGQ PHENQMNPQL
0501: QPMNLQGSVA TMQQNNVPSL QPSSMPSLSG LPNAQQNIMN SLQSSANLDS GQGNALTSLQ QAAVGALQQN PVSAPQQANI NNLSSQNGVN VLQQNINQLQ
0601: PNSNMLQHQH LKQQQEQMMQ TQQLKQQMQQ RQMQQQLMQK QQLMQQQQQQ QQQQQQQQQQ QQQQQQQQQQ QQQQQQQQQQ QQQQQQQQQQ QQQQQQQQLH
0701: QQTKQQQPAQ LQAHQMSQPH QMNDVNDLKM RQGMSANKPG VFHQHQGAVQ RSAYPQQLKS GTSFPISSPQ LLQTASPQIP QHSSPQIDQQ NLLTSLTKAG
0801: TPLQSANSPF VVPSPSTPLA PSPMPGESEK LNSGISLITN AGNIGHHQTT GALAPPPSLA IGTPGISASP LLAEFTSLDG NHGNASTMVS GKSSVTEQPL
0901: ERLIKVVKLM SPKALSASVS DIGSVVSMID RIAGSAPGNG SRAAVGEDLV AMTKCRLQAR NFITLDGAAG TRKMRRYTSA MPLNVVSSAG SVNDSFKQLA
1001: GSETSDLEST ATSSAKRPRI EVNHALLEEI REINQRLIDT VVDISHEDVD PAAAAAAAAE GGEGTIVKCS FSAVALSPNL KSQYTSTQMS PIQPLRLLVP
1101: TNYPNSSPIL LDKFPVEISK EYEDLSVKAK SRFSISLRSL SQPMSLGEIA RTWDVCARAV ISEYAQQSGG GSFSSRYGAW ENCLSAA
0101: SSQSVLQQHP PAVLRQQQQP QQTPVMHQQQ TSMTQQPILP SQQQQQLIGQ PPNATTMQSN QLIGQQNSFS DLQQQQQQQQ QRLLSQQNNL PNLQQQQQQQ
0201: QHQLMAQQSN LSNIHQQQLG HQSNVSALQQ QQQMLGTQSG NPSMQTNQHP VHILQQSKVP VQQQTQQGVS NLLATQGQQS QQQPSQQQLM SQFQSQSTQL
0301: QPQPNSLQRD MQQRLQTSGA LLQTQNVIDQ QKQLFQSQRA LPEASSTSLD STAQTGTINV GDWQEEVYQK IKRMKEMYLP DLNEMHQKIA AKLQQHDSLP
0401: QQPKTEQLEK LKIFKAMLER MITVLQLSKN SITPNFKEKL IGYEKQIVSF INTHRPRKPV PPLQHGQSSV SHMHSMQQPQ QSQSQLSQGQ PHENQMNPQL
0501: QPMNLQGSVA TMQQNNVPSL QPSSMPSLSG LPNAQQNIMN SLQSSANLDS GQGNALTSLQ QAAVGALQQN PVSAPQQANI NNLSSQNGVN VLQQNINQLQ
0601: PNSNMLQHQH LKQQQEQMMQ TQQLKQQMQQ RQMQQQLMQK QQLMQQQQQQ QQQQQQQQQQ QQQQQQQQQQ QQQQQQQQQQ QQQQQQQQQQ QQQQQQQQLH
0701: QQTKQQQPAQ LQAHQMSQPH QMNDVNDLKM RQGMSANKPG VFHQHQGAVQ RSAYPQQLKS GTSFPISSPQ LLQTASPQIP QHSSPQIDQQ NLLTSLTKAG
0801: TPLQSANSPF VVPSPSTPLA PSPMPGESEK LNSGISLITN AGNIGHHQTT GALAPPPSLA IGTPGISASP LLAEFTSLDG NHGNASTMVS GKSSVTEQPL
0901: ERLIKVVKLM SPKALSASVS DIGSVVSMID RIAGSAPGNG SRAAVGEDLV AMTKCRLQAR NFITLDGAAG TRKMRRYTSA MPLNVVSSAG SVNDSFKQLA
1001: GSETSDLEST ATSSAKRPRI EVNHALLEEI REINQRLIDT VVDISHEDVD PAAAAAAAAE GGEGTIVKCS FSAVALSPNL KSQYTSTQMS PIQPLRLLVP
1101: TNYPNSSPIL LDKFPVEISK EYEDLSVKAK SRFSISLRSL SQPMSLGEIA RTWDVCARAV ISEYAQQSGG GSFSSRYGAW ENCLSAA
0001: MDNNNWRPSL PNGEPAMDTG DWRTQLPPDS RQKIVNKIME TLKKHLPFSG PEGINELRRI AARFEEKIFS GALNQTDYLR KISMKMLTME TKSQNAAGSS
0101: AAIPAANNGT SIDSIPTNQG QLLPGSLSTN QSQAPQPLLS QTMQNNTASG MTGSTALPSS MPPVSSITNN NTTSVVNQNA NMQNVAGMLQ DSSGQHGLSS
0201: NMFSGPQRQM LGRPHAMSSQ QQQQPYLYQQ QLQQQLLKQN FQSGNVPNPN SLLPSHIQQQ QQNVLQPNQL HSSQQPGVPT SATQPSTVNS APLQGLHTNQ
0301: QSSPQLSSQQ TTQSMLRQHQ SSMLRQHPQS QQASGIHQQQ SSLPQQSISP LQQQPTQLMR QQAANSSGIQ QKQMMGQHVV GDMQQQHQQR LLNQQNNVMN
0401: IQQQQSQQQP LQQPQQQQKQ QPPAQQQLMS QQNSLQATHQ NPLGTQSNVA GLQQPQQQML NSQVGNSSLQ NNQHSVHMLS QPTVGLQRTH QAGHGLYSSQ
0501: GQQSQNQPSQ QQMMPQLQSH HQQLGLQQQP NLLQQDVQQR LQASGQVTGS LLPPQNVVDQ QRQLYQSQRT LPEMPSSSLD STAQTESANG GDWQEEVYQK
0601: IKSMKETYLP DLNEIYQRVA AKLQQDSMPQ QQRSDQLEKL RQFKTMLERM IQFLSVSKSN IMPALKDKVA YYEKQIIGFL NMHRPRKPVQ QGQLPQSQMQ
0701: PMQQPQSQTV QDQSHDNQTN PQMQSMSMQG AGPRAQQSSM TNMQSNVLSS RPGVSAPQQN IPSSIPASSL ESGQGNTLNN GQQVAMGSMQ QNTSQLVNNS
0801: SASAQSGLST LQSNVNQPQL SSSLLQHQHL KQQQDQQMQL KQQFQQRQMQ QQQLQARQQQ QQQQLQARQQ AAQLQQMNDM NDLTSRQGMN VSRGMFQQHS
0901: MQGQRANYPL QQLKPGAVSS PQLLQGASPQ MSQHLSPQVD QKNTVNKMGT PLQPANSPFV VPSPSSTPLA PSPMQVDSEK PGSSSLSMGN IARQQATGMQ
1001: GVVQSLAIGT PGISASPLLQ EFTSPDGNIL NSSTITSGKP SATELPIERL IRAVKSISPQ ALSSAVSDIG SVVSMVDRIA GSAPGNGSRA SVGEDLVAMT
1101: KCRLQARNFM TQEGMMATKK MKRHTTAMPL SVASLGGSVG DNYKQFAGSE TSDLESTATS DGKKARTETE HALLEEIKEI NQRLIDTVVE ISDDEDAADP
1201: SEVAISSIGC EGTTVRFSFI AVSLSPALKA HLSSTQMSPI QPLRLLVPCS YPNGSPSLLD KLPVETSKEN EDLSSKAMAR FNILLRSLSQ PMSLKDIAKT
1301: WDACARAVIC EYAQQFGGGT FSSKYGTWEK YVAAS
0101: AAIPAANNGT SIDSIPTNQG QLLPGSLSTN QSQAPQPLLS QTMQNNTASG MTGSTALPSS MPPVSSITNN NTTSVVNQNA NMQNVAGMLQ DSSGQHGLSS
0201: NMFSGPQRQM LGRPHAMSSQ QQQQPYLYQQ QLQQQLLKQN FQSGNVPNPN SLLPSHIQQQ QQNVLQPNQL HSSQQPGVPT SATQPSTVNS APLQGLHTNQ
0301: QSSPQLSSQQ TTQSMLRQHQ SSMLRQHPQS QQASGIHQQQ SSLPQQSISP LQQQPTQLMR QQAANSSGIQ QKQMMGQHVV GDMQQQHQQR LLNQQNNVMN
0401: IQQQQSQQQP LQQPQQQQKQ QPPAQQQLMS QQNSLQATHQ NPLGTQSNVA GLQQPQQQML NSQVGNSSLQ NNQHSVHMLS QPTVGLQRTH QAGHGLYSSQ
0501: GQQSQNQPSQ QQMMPQLQSH HQQLGLQQQP NLLQQDVQQR LQASGQVTGS LLPPQNVVDQ QRQLYQSQRT LPEMPSSSLD STAQTESANG GDWQEEVYQK
0601: IKSMKETYLP DLNEIYQRVA AKLQQDSMPQ QQRSDQLEKL RQFKTMLERM IQFLSVSKSN IMPALKDKVA YYEKQIIGFL NMHRPRKPVQ QGQLPQSQMQ
0701: PMQQPQSQTV QDQSHDNQTN PQMQSMSMQG AGPRAQQSSM TNMQSNVLSS RPGVSAPQQN IPSSIPASSL ESGQGNTLNN GQQVAMGSMQ QNTSQLVNNS
0801: SASAQSGLST LQSNVNQPQL SSSLLQHQHL KQQQDQQMQL KQQFQQRQMQ QQQLQARQQQ QQQQLQARQQ AAQLQQMNDM NDLTSRQGMN VSRGMFQQHS
0901: MQGQRANYPL QQLKPGAVSS PQLLQGASPQ MSQHLSPQVD QKNTVNKMGT PLQPANSPFV VPSPSSTPLA PSPMQVDSEK PGSSSLSMGN IARQQATGMQ
1001: GVVQSLAIGT PGISASPLLQ EFTSPDGNIL NSSTITSGKP SATELPIERL IRAVKSISPQ ALSSAVSDIG SVVSMVDRIA GSAPGNGSRA SVGEDLVAMT
1101: KCRLQARNFM TQEGMMATKK MKRHTTAMPL SVASLGGSVG DNYKQFAGSE TSDLESTATS DGKKARTETE HALLEEIKEI NQRLIDTVVE ISDDEDAADP
1201: SEVAISSIGC EGTTVRFSFI AVSLSPALKA HLSSTQMSPI QPLRLLVPCS YPNGSPSLLD KLPVETSKEN EDLSSKAMAR FNILLRSLSQ PMSLKDIAKT
1301: WDACARAVIC EYAQQFGGGT FSSKYGTWEK YVAAS
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Oth /.../aryotes - 38082 (source: NCBI BLink). [Source:TAIR;Acc:AT1G15780]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.