CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

nucleus 1
plastid 2
extracellular 4
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33382	Canola	nucleus	40.0	45.81
KRH08039	Soybean	cytosol	8.05	39.29
CDY36590	Canola	cytosol	22.44	31.4
CDY33381	Canola	cytosol, extracellular	21.22	26.93
CDY36589	Canola	nucleus	73.9	25.27
CDX81731	Canola	plastid	37.07	18.05
CDY53314	Canola	mitochondrion, nucleus	36.83	17.74
CDY33380	Canola	cytosol	19.51	17.66
CDY36591	Canola	cytosol	20.0	15.74
CDY36587	Canola	nucleus	38.54	13.24
CDX83970	Canola	mitochondrion	38.29	13.15
CDY61379	Canola	nucleus	37.56	11.84
CDY00086	Canola	nucleus	11.95	11.34
VIT_13s0047g01240.t01	Wine grape	nucleus	30.24	10.45
CDY36595	Canola	cytosol	6.83	8.21
CDY19980	Canola	nucleus	11.71	8.09
CDY35787	Canola	nucleus	16.34	7.53
CDY66823	Canola	cytosol, nucleus	16.34	7.46
CDX86356	Canola	nucleus	16.83	7.31
CDY19982	Canola	nucleus	10.98	7.28
CDX85281	Canola	nucleus	15.12	6.72
GSMUA_Achr11P...	Banana	nucleus	11.71	6.37
CDY00085	Canola	nucleus	10.73	5.12
CDY35039	Canola	cytosol	1.46	4.35
CDY19981	Canola	cytosol	0.98	2.29
CDY52868	Canola	cytosol	0.49	1.42
CDY53315	Canola	nucleus	0.73	1.34
CDX81732	Canola	nucleus	0.73	1.23
CDY33379	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY61380	EnsemblPlantsGene:GSBRNA2T00033764001	Gene3D:1.10.246.20	GO:A0A078J826	InterPro:MED15_KIX	PANTHER:PTHR33137
PANTHER:PTHR33137:SF4	PFAM:PF16987	ProteinID:CDY61380	ProteinID:CDY61380.1	SEG:seg	UniParc:UPI0004EE2892
UniProt:A0A078J826	MapMan:35.1	:	:	:	:

Description

BnaC05g49900DBnaC05g49900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J826]

Coordinates

chrLK033990:-:31587..34997

Molecular Weight (calculated)

47350.2 Da

IEP (calculated)

9.618

GRAVY (calculated)

-0.626

Length

410 amino acids

Sequence
(BLAST)

001: MFILLPKPTK VVACIYVLVS FPSEHIPFSL QMDSVPQQRR SEQFEKLKQF KAAVERMIQF LSVSKSNIIP ALKDKVAIYE KQIIDLVNML RPRNPVQQGQ
101: LPESQMQPIQ QQSSRGMFSS QGQQSQNQPS QQQMMPLQSH RQQLRLQEQS NLLQQDVQQR LQSSGQVTGS LLPPQNVGDQ RRQLYQSQRT LPEIPSAFLD
201: SMAQTESGYG VDWQEEIFQK IKTLKDAYFS DLTEIDQRVG AKLQQYSLPQ QQRSEEFEKL KRVKTMLERM IQIISVSKRN IMPALKEKVA FYEKQIILFV
301: NVYKGSKPVQ QEQLPESQMQ PMQQQSSPHG NLAVNRGDWR ALHPPGSRQK NVNTLLETLK KHVPYSGEEG IEELMRIAVS FEELIFNTAK DQMDYFCKIS
401: LKMQSMEEGS

Best Arabidopsis Sequence Match ( AT1G15780.1 )
(BLAST)

0001: MDNNNWRPSL PNGEPAMDTG DWRTQLPPDS RQKIVNKIME TLKKHLPFSG PEGINELRRI AARFEEKIFS GALNQTDYLR KISMKMLTME TKSQNAAGSS
0101: AAIPAANNGT SIDSIPTNQG QLLPGSLSTN QSQAPQPLLS QTMQNNTASG MTGSTALPSS MPPVSSITNN NTTSVVNQNA NMQNVAGMLQ DSSGQHGLSS
0201: NMFSGPQRQM LGRPHAMSSQ QQQQPYLYQQ QLQQQLLKQN FQSGNVPNPN SLLPSHIQQQ QQNVLQPNQL HSSQQPGVPT SATQPSTVNS APLQGLHTNQ
0301: QSSPQLSSQQ TTQSMLRQHQ SSMLRQHPQS QQASGIHQQQ SSLPQQSISP LQQQPTQLMR QQAANSSGIQ QKQMMGQHVV GDMQQQHQQR LLNQQNNVMN
0401: IQQQQSQQQP LQQPQQQQKQ QPPAQQQLMS QQNSLQATHQ NPLGTQSNVA GLQQPQQQML NSQVGNSSLQ NNQHSVHMLS QPTVGLQRTH QAGHGLYSSQ
0501: GQQSQNQPSQ QQMMPQLQSH HQQLGLQQQP NLLQQDVQQR LQASGQVTGS LLPPQNVVDQ QRQLYQSQRT LPEMPSSSLD STAQTESANG GDWQEEVYQK
0601: IKSMKETYLP DLNEIYQRVA AKLQQDSMPQ QQRSDQLEKL RQFKTMLERM IQFLSVSKSN IMPALKDKVA YYEKQIIGFL NMHRPRKPVQ QGQLPQSQMQ
0701: PMQQPQSQTV QDQSHDNQTN PQMQSMSMQG AGPRAQQSSM TNMQSNVLSS RPGVSAPQQN IPSSIPASSL ESGQGNTLNN GQQVAMGSMQ QNTSQLVNNS
0801: SASAQSGLST LQSNVNQPQL SSSLLQHQHL KQQQDQQMQL KQQFQQRQMQ QQQLQARQQQ QQQQLQARQQ AAQLQQMNDM NDLTSRQGMN VSRGMFQQHS
0901: MQGQRANYPL QQLKPGAVSS PQLLQGASPQ MSQHLSPQVD QKNTVNKMGT PLQPANSPFV VPSPSSTPLA PSPMQVDSEK PGSSSLSMGN IARQQATGMQ
1001: GVVQSLAIGT PGISASPLLQ EFTSPDGNIL NSSTITSGKP SATELPIERL IRAVKSISPQ ALSSAVSDIG SVVSMVDRIA GSAPGNGSRA SVGEDLVAMT
1101: KCRLQARNFM TQEGMMATKK MKRHTTAMPL SVASLGGSVG DNYKQFAGSE TSDLESTATS DGKKARTETE HALLEEIKEI NQRLIDTVVE ISDDEDAADP
1201: SEVAISSIGC EGTTVRFSFI AVSLSPALKA HLSSTQMSPI QPLRLLVPCS YPNGSPSLLD KLPVETSKEN EDLSSKAMAR FNILLRSLSQ PMSLKDIAKT
1301: WDACARAVIC EYAQQFGGGT FSSKYGTWEK YVAAS

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Oth /.../aryotes - 38082 (source: NCBI BLink). [Source:TAIR;Acc:AT1G15780]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.