CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00085	Canola	nucleus	79.93	55.12
CDY19982	Canola	nucleus	39.29	37.7
CDY35787	Canola	nucleus	47.05	31.35
CDY00086	Canola	nucleus	22.6	31.02
CDX85281	Canola	nucleus	47.55	30.59
CDY66823	Canola	cytosol, nucleus	46.04	30.4
CDX86356	Canola	nucleus	45.03	28.28
AT2G10440.1	Thale cress	nucleus	38.45	24.39
CDY33379	Canola	cytosol	3.2	23.17
TraesCS1B01G359700.1	Wheat	cytosol, mitochondrion, nucleus	4.38	20.8
HORVU5Hr1G125120.1	Barley	cytosol	8.6	20.4
TraesCS1A01G346100.1	Wheat	nucleus	4.05	19.67
TraesCS1D01G348800.1	Wheat	nucleus	4.05	19.51
TraesCS7D01G546200.1	Wheat	nucleus	11.47	18.84
TraesCS7B01G495400.1	Wheat	cytosol	12.65	18.56
CDY35039	Canola	cytosol	4.22	18.12
CDY33382	Canola	nucleus	10.79	17.88
CDY53315	Canola	nucleus	6.58	17.41
TraesCS1A01G403500.2	Wheat	nucleus	17.71	17.38
TraesCS1B01G433100.1	Wheat	nucleus	17.71	17.27
TraesCS1D01G411400.1	Wheat	nucleus	17.54	17.11
TraesCS7B01G493100.1	Wheat	nucleus	10.62	16.98
OQU80675	Sorghum	nucleus	11.97	16.71
CDX81732	Canola	nucleus	6.58	16.05
TraesCS5D01G551100.1	Wheat	nucleus	11.3	15.62
TraesCS4A01G315600.1	Wheat	nucleus	12.65	15.53
HORVU5Hr1G106220.2	Barley	cytosol, nucleus	14.5	15.47
KXG25352	Sorghum	nucleus	3.88	14.74
GSMUA_Achr8P09800_001	Banana	nucleus	3.2	13.57
VIT_08s0040g00740.t01	Wine grape	nucleus	8.94	13.02
TraesCS2D01G594100.1	Wheat	cytosol	4.89	12.5
TraesCS2B01G599400.1	Wheat	cytosol	4.72	12.44
CDY36587	Canola	nucleus	24.45	12.15
HORVU2Hr1G123080.2	Barley	cytosol	4.72	12.12
TraesCS2B01G598700.1	Wheat	cytosol	4.72	12.07
CDX83970	Canola	mitochondrion	24.11	11.98
TraesCSU01G036900.1	Wheat	cytosol	4.55	11.89
CDY61380	Canola	extracellular, vacuole	8.09	11.71
CDY61379	Canola	nucleus	25.46	11.61
HORVU7Hr1G060970.1	Barley	nucleus	25.13	11.35
TraesCS7B01G177500.1	Wheat	nucleus	25.13	11.33
TraesCS7D01G281700.2	Wheat	nucleus	24.96	11.27
HORVU7Hr1G118370.1	Barley	nucleus	23.1	11.2
TraesCS7A01G283500.3	Wheat	nucleus	24.62	11.17
TraesCS7D01G526100.1	Wheat	nucleus	24.45	11.15
TraesCS7A01G540000.1	Wheat	nucleus	24.28	11.06
TraesCS7B01G460900.1	Wheat	nucleus	24.11	10.97
Zm00001d049894_P011	Maize	nucleus	23.95	10.86
EES14038	Sorghum	nucleus	23.95	10.81
CDY52868	Canola	cytosol	2.53	10.64
Zm00001d031863_P013	Maize	nucleus	23.27	10.55
Os08t0523600-01	Rice	cytosol, nucleus	1.69	10.42
Os08t0564800-01	Rice	extracellular	23.1	10.38
CDX81731	Canola	plastid	14.33	10.1
CDY53314	Canola	mitochondrion, nucleus	14.17	9.87
CDY36589	Canola	nucleus	18.89	9.34
CDY33381	Canola	cytosol, extracellular	4.89	8.98
CDY36595	Canola	cytosol	4.38	7.62
CDY36590	Canola	cytosol	3.71	7.51
CDY19981	Canola	cytosol	1.85	6.29
CDY33380	Canola	cytosol	4.38	5.74
CDY36591	Canola	cytosol	4.22	4.8

Protein Annotations

EnsemblPlants:CDY19980	EnsemblPlantsGene:GSBRNA2T00009802001	GO:A0A078G097	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:MED15_KIX	ncoils:Coil	PFAM:PF16987	ProteinID:CDY19980	ProteinID:CDY19980.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0004EE571F	UniProt:A0A078G097	MapMan:35.1	:	:

Description

BnaA09g02710DBnaA09g02710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G097]

Coordinates

chrLK032102:+:263234..265978

Molecular Weight (calculated)

67241.8 Da

IEP (calculated)

10.283

GRAVY (calculated)

-0.797

Length

593 amino acids

Sequence
(BLAST)

001: MEGTSSWKPN EQGGDSLAND WRSQHEPDLR KKVIVAIVER LKICFSRHIT DTITKSACTF EEKIYGMAKD KTPTNQPWLS QSNIQSKFNT PESSGLPIQS
101: PMTVSAAQNL NVQMGERVES SLGPGPQRQI QGRQQQLQKP QQQQLRSNTM YQHHRNRQQQ SLLPHHRSSS PIKLSFPQSS ALSSHQQQMA VPSREHKQLE
201: RKYHISQLMN GQDTQQNHLT SPQNNGDKQR ISQQNNTTSF NVHGSKLLGA QGQEVEKSQP LMLQHLNETQ RFQAADCFVA FQDSTSKTLN PSGGDWREET
301: YQKIKALKDK YIHILSELFQ KLSYKLQEID SLPQQNMMPS DPRVENLRAT IARLGQVLVY LNVSRSSVSE QHRDKFSALE SLALKFTKHQ REKEEQQQVH
401: IPPPQIHQTA LQTQSGQVHA SQTAAPHSSQ TRPRIEPKDV NKVMSSSGNV VVHSPKQNPP SNQREVVHSN ISQAQSSMFQ KKQFHHLPKQ EQPSASSPQM
501: QKNNSSPQLV EQQTLPTPTN KTEAQEHPLV TLSPEPPSER PIDRLIKAVS QEVIYRLFKF SFSILSLIKV LMFVCVALLV SIIITRIFGT ISK

Best Arabidopsis Sequence Match ( AT2G10440.1 )
(BLAST)

001: MEGNTNWKPN EQGGNRDAAN NRIDWRSQHE PELRQKVLSK IVEKFKEKFH AHEEYKINDI ASKFEENFYS IATDKTTTSQ QWLQQNTQSN LCVICFAKSG
101: PYNRSRFSKT DTCSVTAAAT SSAKFVETTY STAFSSIKLT KHSITDQKSV FDTTEQKRQE QEQLINQLTN LPTSRPNNRD QQGAFQVSSS QQNNNVTLHA
201: MSQQKNNLQS MTRGQQVGQS QPMMSQQYRQ QYPMQQDPQN RNLQKHLDFV QNNTNQFQAA SSLRQTQNIT DQQNQPQQLE RANPSILIMN IIVASQDSTG
301: KTVNVNAGNW QEETYQKIKK LKEMCLPVLS LMHQRVAEKL RETESLPPQP MQAQWIEKLK AGKLSMEHLM FFLNVHRSSV SEKHRDKFSQ YEYHILKFTK
401: SQTMVLRPTQ QQQGQFPPSQ TAMQTQSPQV HVSQSLYKEQ RRSRLMPSSQ NEASSLLQIR PKLDPRDENI IMASSGNVML PSVKQNPRAV NTNISSVQSL
501: QKQKRFHHRQ MQQQQPQQGN HQHQMQTNEM NDVRMRERVN IKARLLEQQV SSSQRQVPKQ ESNVSSSQIQ NHSSPQLVDQ HILPATINKT GTPLNSSGSA
601: FVAPAPSPVP GDSEMPISVE SPVSGVDEIN STLDSSSKLG TQETPLLFVP PPEPITERPI DRLIKAFQAA SPKSLAESVS EISSVISMVD MIGGSFPSSG
701: GSRAGLGEDL SERTRNFTTH EETNLSKRMK RSINIVPPDM SSQIDSYEQL SSLESEVVST TSSGLKVNNI APGYALLQEI KETNGRLVET VVEICDEDSL
801: GTIVTCTYAP VALSATFKDH YKSGKIIFYV SKCLMQAQIQ PLRLLFPMDY PYSSPIVLEE ISFDTSVHKY EDLSARTRSR FSLSMKEFSE PGFSKGIAQT
901: WNDCARATMV EYAERHGGGT FSSKYGAWET VLRAS

Arabidopsis Description

MED15CProbable mediator of RNA polymerase II transcription subunit 15c [Source:UniProtKB/Swiss-Prot;Acc:Q9SHV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.