Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66823 | Canola | cytosol, nucleus | 91.69 | 90.87 |
| Bra040585.1-P | Field mustard | nucleus | 91.69 | 90.77 |
| CDY19981 | Canola | cytosol | 13.71 | 69.71 |
| CDX85281 | Canola | nucleus | 56.07 | 54.12 |
| CDY19982 | Canola | nucleus | 36.18 | 52.1 |
| CDY00086 | Canola | nucleus | 24.04 | 49.54 |
| CDY00085 | Canola | nucleus | 47.42 | 49.07 |
| CDX86356 | Canola | nucleus | 51.69 | 48.73 |
| CDY19980 | Canola | nucleus | 31.35 | 47.05 |
| AT2G10440.1 | Thale cress | nucleus | 40.56 | 38.61 |
| HORVU5Hr1G125120.1 | Barley | cytosol | 7.19 | 25.6 |
| TraesCS1A01G346100.1 | Wheat | nucleus | 3.48 | 25.41 |
| TraesCS1D01G348800.1 | Wheat | nucleus | 3.48 | 25.2 |
| TraesCS5D01G551100.1 | Wheat | nucleus | 12.13 | 25.17 |
| TraesCS1B01G359700.1 | Wheat | cytosol, mitochondrion, nucleus | 3.48 | 24.8 |
| TraesCS7D01G546200.1 | Wheat | nucleus | 10.0 | 24.65 |
| CDY33379 | Canola | cytosol | 2.25 | 24.39 |
| TraesCS7B01G495400.1 | Wheat | cytosol | 11.01 | 24.26 |
| TraesCS4A01G315600.1 | Wheat | nucleus | 13.03 | 24.02 |
| CDX81731 | Canola | plastid | 22.36 | 23.63 |
| TraesCS1D01G411400.1 | Wheat | nucleus | 16.07 | 23.52 |
| TraesCS1B01G433100.1 | Wheat | nucleus | 16.07 | 23.52 |
| CDY53314 | Canola | mitochondrion, nucleus | 22.36 | 23.38 |
| TraesCS7B01G493100.1 | Wheat | nucleus | 9.66 | 23.18 |
| TraesCS1A01G403500.2 | Wheat | nucleus | 15.62 | 23.01 |
| HORVU2Hr1G123080.2 | Barley | cytosol | 5.84 | 22.51 |
| CDY36587 | Canola | nucleus | 30.0 | 22.38 |
| CDY33382 | Canola | nucleus | 8.99 | 22.35 |
| CDX83970 | Canola | mitochondrion | 29.55 | 22.03 |
| TraesCSU01G036900.1 | Wheat | cytosol | 5.62 | 22.03 |
| TraesCS2D01G594100.1 | Wheat | cytosol | 5.73 | 21.98 |
| CDY53315 | Canola | nucleus | 5.51 | 21.88 |
| Os08t0523600-01 | Rice | cytosol, nucleus | 2.36 | 21.88 |
| CDY61379 | Canola | nucleus | 31.91 | 21.83 |
| TraesCS2B01G598700.1 | Wheat | cytosol | 5.62 | 21.55 |
| TraesCS2B01G599400.1 | Wheat | cytosol | 5.39 | 21.33 |
| TraesCS7D01G526100.1 | Wheat | nucleus | 30.9 | 21.14 |
| TraesCS7A01G540000.1 | Wheat | nucleus | 30.79 | 21.04 |
| TraesCS7B01G177500.1 | Wheat | nucleus | 30.9 | 20.91 |
| TraesCS7A01G283500.3 | Wheat | nucleus | 30.56 | 20.81 |
| TraesCS7B01G460900.1 | Wheat | nucleus | 30.45 | 20.8 |
| HORVU7Hr1G060970.1 | Barley | nucleus | 30.67 | 20.79 |
| TraesCS7D01G281700.2 | Wheat | nucleus | 30.67 | 20.79 |
| HORVU7Hr1G118370.1 | Barley | nucleus | 28.43 | 20.69 |
| EES14038 | Sorghum | nucleus | 30.45 | 20.62 |
| Os08t0564800-01 | Rice | extracellular | 30.45 | 20.53 |
| HORVU5Hr1G106220.2 | Barley | cytosol, nucleus | 12.7 | 20.32 |
| Zm00001d031863_P013 | Maize | nucleus | 29.78 | 20.26 |
| OQU80675 | Sorghum | nucleus | 9.55 | 20.0 |
| GSMUA_Achr8P09800_001 | Banana | nucleus | 3.15 | 20.0 |
| Zm00001d049894_P011 | Maize | nucleus | 29.21 | 19.88 |
| CDX81732 | Canola | nucleus | 5.39 | 19.75 |
| CDY35039 | Canola | cytosol | 3.03 | 19.57 |
| VIT_08s0040g00740.t01 | Wine grape | nucleus | 8.65 | 18.92 |
| CDY52868 | Canola | cytosol | 2.92 | 18.44 |
| KXG25352 | Sorghum | nucleus | 3.03 | 17.31 |
| CDY61380 | Canola | extracellular, vacuole | 7.53 | 16.34 |
| CDY36589 | Canola | nucleus | 18.54 | 13.76 |
| CDY36590 | Canola | cytosol | 4.16 | 12.63 |
| CDY36595 | Canola | cytosol | 4.72 | 12.32 |
| CDY33381 | Canola | cytosol, extracellular | 4.38 | 12.07 |
| CDY33380 | Canola | cytosol | 4.38 | 8.61 |
| CDY36591 | Canola | cytosol | 4.04 | 6.91 |
Protein Annotations
| EnsemblPlants:CDY35787 | EnsemblPlantsGene:GSBRNA2T00059255001 | Gene3D:1.10.246.20 | GO:A0A078HD81 | InterPro:MED15_KIX | PANTHER:PTHR33137 |
| PANTHER:PTHR33137:SF4 | PFAM:PF16987 | ProteinID:CDY35787 | ProteinID:CDY35787.1 | SEG:seg | UniParc:UPI0004EB0F2A |
| UniProt:A0A078HD81 | MapMan:15.3.3.3.5 | : | : | : | : |
Description
BnaC02g38070DBnaC02g38070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HD81]
Coordinates
chrLK032360:+:362454..366252
Molecular Weight (calculated)
100946.0 Da
IEP (calculated)
6.877
GRAVY (calculated)
-0.771
Length
890 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGYSNWKPN EQGRYSLANN ANDWRSTHEF DLRKRVIIAI VEKLKICFPK HSQNDINNTA CKFEGKIYGM ATDKSDYLRK ISEKIMVFDK KFKSVQSGSL
101: VNEPNTTQDP AAQAPNQGPS LPTSLPYTQT PTIQQWFPQG NIHESSGFSN QVPITVSAAH NLNIQMGEGV HSHLRSGSQR QIQGRKQFCT QPQQQLQSYN
201: DMFQGQVNQQ LLKENIHHLQ LPYMQQQQHQ QSVLKQPIHQ HLPHHTSLST IQQSFPQTSV HSSLTSSGQQ NSQYLPRHQF PTQRVQSSHQ QHMYVQSQEQ
301: KQQEYDQLIS QLMNGQDTLQ NHLTSQQNNI VSFQEMGQQS SNPHNMYLQQ HLYSHSNNAS SSLASQQQTY MPGGQSGNFN VYESSLLGTQ GQDLGQSQPM
401: MLQQYQQPQN IILQQHLDDT QRLHEAVSLH QTQNVANQQN QPYQLQRASP ANPSSNTVNA SGGDWQEETY QKIKALKEKY LPVLSTLFQK VSDKLGEVDS
501: LPQQNMQNEP IEKLRAAKSM LELVIMFLNV HRDSISESHR DRFSLYEEQV LRFTKNQQTV TQRPMQHQQS PSGHNQHSNI SLAQSCMFHQ NQFHHLNQLL
601: QSQQQQQQPQ TNQQQPQIQN YSSPQFVDHQ ILSTTFHSTG TSSQSLAPSP NLVDLEKPIY VESLVLHDYQ LQTAPQEQPI DRLIKAVHSV TTTPPLDIIS
701: QTGSYKRLSS LESEADSTAS SGSKAQKIEP GWALLLQEIK DINGSLVETV VNICNEEVYP SEVTPGTIVT CSYSPVALSD TFEAHYKSGH ISQIQPLRLL
801: VPVNYPSSPI LLLEKLSYDS SLHKYDDLSA RTRSRFGLSM KEFSEPMSLK EIAQAWDVCA RETMAEYAER HGGCTFSSNY GHWDPVLGAS
101: VNEPNTTQDP AAQAPNQGPS LPTSLPYTQT PTIQQWFPQG NIHESSGFSN QVPITVSAAH NLNIQMGEGV HSHLRSGSQR QIQGRKQFCT QPQQQLQSYN
201: DMFQGQVNQQ LLKENIHHLQ LPYMQQQQHQ QSVLKQPIHQ HLPHHTSLST IQQSFPQTSV HSSLTSSGQQ NSQYLPRHQF PTQRVQSSHQ QHMYVQSQEQ
301: KQQEYDQLIS QLMNGQDTLQ NHLTSQQNNI VSFQEMGQQS SNPHNMYLQQ HLYSHSNNAS SSLASQQQTY MPGGQSGNFN VYESSLLGTQ GQDLGQSQPM
401: MLQQYQQPQN IILQQHLDDT QRLHEAVSLH QTQNVANQQN QPYQLQRASP ANPSSNTVNA SGGDWQEETY QKIKALKEKY LPVLSTLFQK VSDKLGEVDS
501: LPQQNMQNEP IEKLRAAKSM LELVIMFLNV HRDSISESHR DRFSLYEEQV LRFTKNQQTV TQRPMQHQQS PSGHNQHSNI SLAQSCMFHQ NQFHHLNQLL
601: QSQQQQQQPQ TNQQQPQIQN YSSPQFVDHQ ILSTTFHSTG TSSQSLAPSP NLVDLEKPIY VESLVLHDYQ LQTAPQEQPI DRLIKAVHSV TTTPPLDIIS
701: QTGSYKRLSS LESEADSTAS SGSKAQKIEP GWALLLQEIK DINGSLVETV VNICNEEVYP SEVTPGTIVT CSYSPVALSD TFEAHYKSGH ISQIQPLRLL
801: VPVNYPSSPI LLLEKLSYDS SLHKYDDLSA RTRSRFGLSM KEFSEPMSLK EIAQAWDVCA RETMAEYAER HGGCTFSSNY GHWDPVLGAS
001: MEGNTNWKPN EQGGNRDAAN NRIDWRSQHE PELRQKVLSK IVEKFKEKFH AHEEYKINDI ASKFEENFYS IATDKTTTSQ QWLQQNTQSN LCVICFAKSG
101: PYNRSRFSKT DTCSVTAAAT SSAKFVETTY STAFSSIKLT KHSITDQKSV FDTTEQKRQE QEQLINQLTN LPTSRPNNRD QQGAFQVSSS QQNNNVTLHA
201: MSQQKNNLQS MTRGQQVGQS QPMMSQQYRQ QYPMQQDPQN RNLQKHLDFV QNNTNQFQAA SSLRQTQNIT DQQNQPQQLE RANPSILIMN IIVASQDSTG
301: KTVNVNAGNW QEETYQKIKK LKEMCLPVLS LMHQRVAEKL RETESLPPQP MQAQWIEKLK AGKLSMEHLM FFLNVHRSSV SEKHRDKFSQ YEYHILKFTK
401: SQTMVLRPTQ QQQGQFPPSQ TAMQTQSPQV HVSQSLYKEQ RRSRLMPSSQ NEASSLLQIR PKLDPRDENI IMASSGNVML PSVKQNPRAV NTNISSVQSL
501: QKQKRFHHRQ MQQQQPQQGN HQHQMQTNEM NDVRMRERVN IKARLLEQQV SSSQRQVPKQ ESNVSSSQIQ NHSSPQLVDQ HILPATINKT GTPLNSSGSA
601: FVAPAPSPVP GDSEMPISVE SPVSGVDEIN STLDSSSKLG TQETPLLFVP PPEPITERPI DRLIKAFQAA SPKSLAESVS EISSVISMVD MIGGSFPSSG
701: GSRAGLGEDL SERTRNFTTH EETNLSKRMK RSINIVPPDM SSQIDSYEQL SSLESEVVST TSSGLKVNNI APGYALLQEI KETNGRLVET VVEICDEDSL
801: GTIVTCTYAP VALSATFKDH YKSGKIIFYV SKCLMQAQIQ PLRLLFPMDY PYSSPIVLEE ISFDTSVHKY EDLSARTRSR FSLSMKEFSE PGFSKGIAQT
901: WNDCARATMV EYAERHGGGT FSSKYGAWET VLRAS
101: PYNRSRFSKT DTCSVTAAAT SSAKFVETTY STAFSSIKLT KHSITDQKSV FDTTEQKRQE QEQLINQLTN LPTSRPNNRD QQGAFQVSSS QQNNNVTLHA
201: MSQQKNNLQS MTRGQQVGQS QPMMSQQYRQ QYPMQQDPQN RNLQKHLDFV QNNTNQFQAA SSLRQTQNIT DQQNQPQQLE RANPSILIMN IIVASQDSTG
301: KTVNVNAGNW QEETYQKIKK LKEMCLPVLS LMHQRVAEKL RETESLPPQP MQAQWIEKLK AGKLSMEHLM FFLNVHRSSV SEKHRDKFSQ YEYHILKFTK
401: SQTMVLRPTQ QQQGQFPPSQ TAMQTQSPQV HVSQSLYKEQ RRSRLMPSSQ NEASSLLQIR PKLDPRDENI IMASSGNVML PSVKQNPRAV NTNISSVQSL
501: QKQKRFHHRQ MQQQQPQQGN HQHQMQTNEM NDVRMRERVN IKARLLEQQV SSSQRQVPKQ ESNVSSSQIQ NHSSPQLVDQ HILPATINKT GTPLNSSGSA
601: FVAPAPSPVP GDSEMPISVE SPVSGVDEIN STLDSSSKLG TQETPLLFVP PPEPITERPI DRLIKAFQAA SPKSLAESVS EISSVISMVD MIGGSFPSSG
701: GSRAGLGEDL SERTRNFTTH EETNLSKRMK RSINIVPPDM SSQIDSYEQL SSLESEVVST TSSGLKVNNI APGYALLQEI KETNGRLVET VVEICDEDSL
801: GTIVTCTYAP VALSATFKDH YKSGKIIFYV SKCLMQAQIQ PLRLLFPMDY PYSSPIVLEE ISFDTSVHKY EDLSARTRSR FSLSMKEFSE PGFSKGIAQT
901: WNDCARATMV EYAERHGGGT FSSKYGAWET VLRAS
Arabidopsis Description
MED15CProbable mediator of RNA polymerase II transcription subunit 15c [Source:UniProtKB/Swiss-Prot;Acc:Q9SHV7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.