CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00086	Canola	nucleus	82.29	33.33
CDY19982	Canola	nucleus	84.0	23.79
CDY00085	Canola	nucleus	93.14	18.95
CDY35787	Canola	nucleus	69.71	13.71
CDX85281	Canola	nucleus	71.43	13.56
CDY66823	Canola	cytosol, nucleus	67.43	13.14
CDX86356	Canola	nucleus	70.29	13.03
CDY53314	Canola	mitochondrion, nucleus	44.0	9.05
CDX81731	Canola	plastid	43.43	9.03
CDX83970	Canola	mitochondrion	45.71	6.7
CDY36587	Canola	nucleus	43.43	6.37
HORVU7Hr1G118370.1	Barley	nucleus	41.71	5.97
CDY61379	Canola	nucleus	44.0	5.92
TraesCS7A01G283500.3	Wheat	nucleus	42.86	5.74
TraesCS7B01G177500.1	Wheat	nucleus	42.86	5.7
TraesCS7D01G526100.1	Wheat	nucleus	42.29	5.69
TraesCS7D01G281700.2	Wheat	nucleus	42.29	5.64
TraesCS7A01G540000.1	Wheat	nucleus	41.71	5.61
TraesCS7B01G460900.1	Wheat	nucleus	41.14	5.53
Os08t0564800-01	Rice	extracellular	41.14	5.45
HORVU7Hr1G060970.1	Barley	nucleus	40.57	5.41
EES14038	Sorghum	nucleus	40.57	5.4
Zm00001d031863_P013	Maize	nucleus	40.0	5.35
Zm00001d049894_P011	Maize	nucleus	38.86	5.2
VIT_08s0040g00740.t01	Wine grape	nucleus	4.57	1.97
CDY19980	Canola	nucleus	6.29	1.85
TraesCS2B01G599400.1	Wheat	cytosol	2.29	1.78
TraesCSU01G036900.1	Wheat	cytosol	2.29	1.76
HORVU2Hr1G123080.2	Barley	cytosol	2.29	1.73
TraesCS2B01G598700.1	Wheat	cytosol	2.29	1.72
TraesCS2D01G594100.1	Wheat	cytosol	2.29	1.72
CDY33382	Canola	nucleus	2.86	1.4
CDY36590	Canola	cytosol	2.29	1.37
CDY33381	Canola	cytosol, extracellular	2.29	1.24
CDY61380	Canola	extracellular, vacuole	2.29	0.98
TraesCS1B01G433100.1	Wheat	nucleus	2.86	0.82
TraesCS1D01G411400.1	Wheat	nucleus	2.86	0.82
CDY33380	Canola	cytosol	1.71	0.66
TraesCS1A01G403500.2	Wheat	nucleus	2.29	0.66
CDY36595	Canola	cytosol	1.14	0.59
CDY53315	Canola	nucleus	0.57	0.45
CDX81732	Canola	nucleus	0.57	0.41
CDY36591	Canola	cytosol	1.14	0.38
CDY36589	Canola	nucleus	2.29	0.33
HORVU5Hr1G106220.2	Barley	cytosol, nucleus	0.0	0.0
CDY33379	Canola	cytosol	0.0	0.0
CDY35039	Canola	cytosol	0.0	0.0
TraesCS7D01G546200.1	Wheat	nucleus	0.0	0.0
CDY52868	Canola	cytosol	0.0	0.0
GSMUA_Achr8P09800_001	Banana	nucleus	0.0	0.0
TraesCS7B01G495400.1	Wheat	cytosol	0.0	0.0
TraesCS7B01G493100.1	Wheat	nucleus	0.0	0.0
TraesCS1D01G348800.1	Wheat	nucleus	0.0	0.0
HORVU5Hr1G125120.1	Barley	cytosol	0.0	0.0
KXG25352	Sorghum	nucleus	0.0	0.0
OQU80675	Sorghum	nucleus	0.0	0.0
TraesCS5D01G551100.1	Wheat	nucleus	0.0	0.0
TraesCS4A01G315600.1	Wheat	nucleus	0.0	0.0
Os08t0523600-01	Rice	cytosol, nucleus	0.0	0.0
TraesCS1A01G346100.1	Wheat	nucleus	0.0	0.0
TraesCS1B01G359700.1	Wheat	cytosol, mitochondrion, nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY19981	EnsemblPlantsGene:GSBRNA2T00009803001	PANTHER:PTHR33137	PANTHER:PTHR33137:SF4	ProteinID:CDY19981	ProteinID:CDY19981.1
SEG:seg	UniParc:UPI0004EE4D14	UniProt:A0A078G3P8	MapMan:15.3.3.3.5	:	:

Description

BnaA09g02700DBnaA09g02700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G3P8]

Coordinates

chrLK032102:+:266142..267009

Molecular Weight (calculated)

19540.2 Da

IEP (calculated)

6.263

GRAVY (calculated)

-0.216

Length

175 amino acids

Sequence
(BLAST)

001: MPSQTDSYKR FSVNKIEPSY ALLQEIIEIN GRFVETVVNI CNEDVCPSEA TSGTVVVTCS YVPVALSATF KALYNSGHIS QIQPLRLLVP ENYPNSPIII
101: EKILFDGASD HKFEDLSARA RSRFSSSMKE AMSLKEIAKV WDECARATML EYAERHGGGT FSSKYGRWES VLRSS

Best Arabidopsis Sequence Match ( AT2G10440.1 )
(BLAST)

001: MEGNTNWKPN EQGGNRDAAN NRIDWRSQHE PELRQKVLSK IVEKFKEKFH AHEEYKINDI ASKFEENFYS IATDKTTTSQ QWLQQNTQSN LCVICFAKSG
101: PYNRSRFSKT DTCSVTAAAT SSAKFVETTY STAFSSIKLT KHSITDQKSV FDTTEQKRQE QEQLINQLTN LPTSRPNNRD QQGAFQVSSS QQNNNVTLHA
201: MSQQKNNLQS MTRGQQVGQS QPMMSQQYRQ QYPMQQDPQN RNLQKHLDFV QNNTNQFQAA SSLRQTQNIT DQQNQPQQLE RANPSILIMN IIVASQDSTG
301: KTVNVNAGNW QEETYQKIKK LKEMCLPVLS LMHQRVAEKL RETESLPPQP MQAQWIEKLK AGKLSMEHLM FFLNVHRSSV SEKHRDKFSQ YEYHILKFTK
401: SQTMVLRPTQ QQQGQFPPSQ TAMQTQSPQV HVSQSLYKEQ RRSRLMPSSQ NEASSLLQIR PKLDPRDENI IMASSGNVML PSVKQNPRAV NTNISSVQSL
501: QKQKRFHHRQ MQQQQPQQGN HQHQMQTNEM NDVRMRERVN IKARLLEQQV SSSQRQVPKQ ESNVSSSQIQ NHSSPQLVDQ HILPATINKT GTPLNSSGSA
601: FVAPAPSPVP GDSEMPISVE SPVSGVDEIN STLDSSSKLG TQETPLLFVP PPEPITERPI DRLIKAFQAA SPKSLAESVS EISSVISMVD MIGGSFPSSG
701: GSRAGLGEDL SERTRNFTTH EETNLSKRMK RSINIVPPDM SSQIDSYEQL SSLESEVVST TSSGLKVNNI APGYALLQEI KETNGRLVET VVEICDEDSL
801: GTIVTCTYAP VALSATFKDH YKSGKIIFYV SKCLMQAQIQ PLRLLFPMDY PYSSPIVLEE ISFDTSVHKY EDLSARTRSR FSLSMKEFSE PGFSKGIAQT
901: WNDCARATMV EYAERHGGGT FSSKYGAWET VLRAS

Arabidopsis Description

MED15CProbable mediator of RNA polymerase II transcription subunit 15c [Source:UniProtKB/Swiss-Prot;Acc:Q9SHV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.