CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 1
mitochondrion 1
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36590	Canola	cytosol	75.85	83.62
CDY33379	Canola	cytosol	8.67	34.15
TraesCS1D01G348800.1	Wheat	nucleus	12.38	32.52
TraesCS1A01G346100.1	Wheat	nucleus	12.07	31.97
CDY52868	Canola	cytosol	13.93	31.91
TraesCS1B01G359700.1	Wheat	cytosol, mitochondrion, nucleus	12.07	31.2
CDY33380	Canola	cytosol	40.25	28.7
Os08t0523600-01	Rice	cytosol, nucleus	8.36	28.12
CDY35039	Canola	cytosol	11.76	27.54
TraesCSU01G036900.1	Wheat	cytosol	18.58	26.43
TraesCS2D01G594100.1	Wheat	cytosol	18.89	26.29
TraesCS2B01G599400.1	Wheat	cytosol	17.96	25.78
HORVU2Hr1G123080.2	Barley	cytosol	18.27	25.54
CDY36591	Canola	cytosol	41.18	25.53
TraesCS2B01G598700.1	Wheat	cytosol	17.65	24.57
KXG25352	Sorghum	nucleus	11.76	24.36
Bra026105.1-P	Field mustard	cytosol	76.78	23.55
CDY53315	Canola	nucleus	14.86	21.43
CDY61380	Canola	extracellular, vacuole	26.93	21.22
GSMUA_Achr8P09800_001	Banana	nucleus	8.98	20.71
CDY33382	Canola	nucleus	22.29	20.11
CDX81732	Canola	nucleus	14.86	19.75
CDY36595	Canola	cytosol	19.81	18.77
HORVU5Hr1G125120.1	Barley	cytosol	12.69	16.4
OQU80675	Sorghum	nucleus	16.72	12.71
TraesCS7D01G546200.1	Wheat	nucleus	13.93	12.47
TraesCS7B01G493100.1	Wheat	nucleus	13.93	12.13
CDY36589	Canola	nucleus	42.72	11.51
TraesCS7B01G495400.1	Wheat	cytosol	13.93	11.14
VIT_08s0040g00740.t01	Wine grape	nucleus	12.69	10.07
TraesCS4A01G315600.1	Wheat	nucleus	14.55	9.73
TraesCS5D01G551100.1	Wheat	nucleus	12.69	9.56
TraesCS1B01G433100.1	Wheat	nucleus	17.65	9.38
HORVU5Hr1G106220.2	Barley	cytosol, nucleus	16.1	9.35
TraesCS1A01G403500.2	Wheat	nucleus	17.03	9.11
TraesCS1D01G411400.1	Wheat	nucleus	17.03	9.05
CDX83970	Canola	mitochondrion	23.84	6.45
HORVU7Hr1G118370.1	Barley	nucleus	24.15	6.38
CDY36587	Canola	nucleus	23.53	6.37
TraesCS7D01G526100.1	Wheat	nucleus	25.39	6.3
TraesCS7A01G540000.1	Wheat	nucleus	25.39	6.3
TraesCS7B01G460900.1	Wheat	nucleus	25.08	6.22
Os08t0564800-01	Rice	extracellular	24.77	6.06
TraesCS7D01G281700.2	Wheat	nucleus	24.46	6.02
HORVU7Hr1G060970.1	Barley	nucleus	24.46	6.02
EES14038	Sorghum	nucleus	24.46	6.01
TraesCS7B01G177500.1	Wheat	nucleus	24.46	6.01
TraesCS7A01G283500.3	Wheat	nucleus	24.15	5.97
CDY61379	Canola	nucleus	23.84	5.92
Zm00001d031863_P013	Maize	nucleus	23.22	5.73
Zm00001d049894_P011	Maize	nucleus	23.22	5.73
CDY19982	Canola	nucleus	10.84	5.66
CDY19980	Canola	nucleus	8.98	4.89
CDY00085	Canola	nucleus	12.07	4.53
CDY35787	Canola	nucleus	12.07	4.38
CDY66823	Canola	cytosol, nucleus	11.46	4.12
CDX86356	Canola	nucleus	11.15	3.81
CDX85281	Canola	nucleus	10.53	3.69
CDX81731	Canola	plastid	8.05	3.09
CDY53314	Canola	mitochondrion, nucleus	8.05	3.06
CDY00086	Canola	nucleus	4.02	3.01
CDY19981	Canola	cytosol	1.24	2.29

Protein Annotations

EnsemblPlants:CDY33381	EnsemblPlantsGene:GSBRNA2T00054228001	Gene3D:1.10.246.20	GO:A0A078H687	InterPro:MED15_KIX	PANTHER:PTHR33137
PANTHER:PTHR33137:SF4	PFAM:PF16987	ProteinID:CDY33381	ProteinID:CDY33381.1	UniParc:UPI0004EF3EC8	UniProt:A0A078H687
MapMan:35.1	:	:	:	:	:

Description

BnaC05g12020DBnaC05g12020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H687]

Coordinates

chrLK032312:+:335681..338488

Molecular Weight (calculated)

36303.2 Da

IEP (calculated)

7.285

GRAVY (calculated)

-0.482

Length

323 amino acids

Sequence
(BLAST)

001: MLSKSCICLC KSFFIQDFFH KYKIVNIDTH LMGPSCPNGE PAIDTLDWRT QLQSDARESI VNMITEALKK QHLPFSGPEG VNEHSKIASR FEDKVFNNAA
101: NLNDYLRKIS LEVLTIENTV KNAAEPTTPL NSSAGKANVD VGSLMDNNSL RPSYLPNREP AVDTGDWRTQ LPPATRRMIV NNITDTLVKH HSGTERTNEL
201: RGFAARLEEN IFNTADHQID YLRQISAKIS LLAASNSLPL DLGNLGINRG DWRTQHPPGS RQKNVNKLLE TLKKHVPYSG KEGIEELMRI AVSFEELIFN
301: TARNQVDYLS KISLKMQSLE EAT

Best Arabidopsis Sequence Match ( AT1G15790.4 )
(BLAST)

001: MDTTGDWRTQ FPSASRSRIV NKIMETQLKQ LPFIRPEGTN ELRKIAVRFE EKLFNNASNQ TEYLRQICMK MLNMETKSQN AAGSSSADDN TPPLVPEPSV
101: PNNEPAVNTG DWRTQQPQDS RQKNINALLD TLKKIVPHSG KEGIDELMRI AVSLEELIFN SAINQEDYLG KISLKMRTM

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (sour /.../BI BLink). [Source:TAIR;Acc:AT1G15790]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.