CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036204.1-P	Field mustard	nucleus	99.35	99.35
CDY00086	Canola	nucleus	60.84	87.04
CDY19981	Canola	cytosol	23.79	84.0
CDY00085	Canola	nucleus	68.12	48.95
CDY19980	Canola	nucleus	37.7	39.29
CDX85281	Canola	nucleus	56.15	37.64
CDX86356	Canola	nucleus	55.83	36.55
CDY35787	Canola	nucleus	52.1	36.18
CDY66823	Canola	cytosol, nucleus	51.94	35.75
AT2G10440.1	Thale cress	nucleus	47.41	31.34
TraesCS1A01G346100.1	Wheat	nucleus	4.53	22.95
TraesCS1D01G348800.1	Wheat	nucleus	4.21	21.14
TraesCS1B01G359700.1	Wheat	cytosol, mitochondrion, nucleus	4.21	20.8
CDY33379	Canola	cytosol	2.75	20.73
CDX81731	Canola	plastid	26.54	19.48
CDY53314	Canola	mitochondrion, nucleus	26.54	19.27
HORVU5Hr1G125120.1	Barley	cytosol	7.61	18.8
CDY33382	Canola	nucleus	10.36	17.88
CDY53315	Canola	nucleus	6.31	17.41
CDY36587	Canola	nucleus	33.33	17.27
TraesCS7D01G546200.1	Wheat	nucleus	10.03	17.17
CDX83970	Canola	mitochondrion	32.85	17.0
CDY35039	Canola	cytosol	3.72	16.67
CDX81732	Canola	nucleus	6.47	16.46
TraesCS2B01G599400.1	Wheat	cytosol	5.99	16.44
GSMUA_Achr8P09800_001	Banana	nucleus	3.72	16.43
TraesCS2D01G594100.1	Wheat	cytosol	6.15	16.38
TraesCS2B01G598700.1	Wheat	cytosol	6.15	16.38
TraesCSU01G036900.1	Wheat	cytosol	5.99	16.3
CDY61379	Canola	nucleus	33.66	15.99
HORVU7Hr1G118370.1	Barley	nucleus	31.55	15.94
TraesCS7B01G495400.1	Wheat	cytosol	10.19	15.59
TraesCS7B01G177500.1	Wheat	nucleus	33.17	15.59
HORVU2Hr1G123080.2	Barley	cytosol	5.83	15.58
TraesCS7A01G283500.3	Wheat	nucleus	32.85	15.53
OQU80675	Sorghum	nucleus	10.68	15.53
TraesCS7D01G281700.2	Wheat	nucleus	32.85	15.46
TraesCS1B01G433100.1	Wheat	nucleus	15.21	15.46
KXG25352	Sorghum	nucleus	3.88	15.38
HORVU7Hr1G060970.1	Barley	nucleus	32.69	15.38
TraesCS7D01G526100.1	Wheat	nucleus	31.88	15.14
TraesCS1D01G411400.1	Wheat	nucleus	14.89	15.13
TraesCS7A01G540000.1	Wheat	nucleus	31.88	15.13
Zm00001d031863_P013	Maize	nucleus	31.88	15.06
TraesCS7B01G460900.1	Wheat	nucleus	31.72	15.04
TraesCS1A01G403500.2	Wheat	nucleus	14.56	14.9
EES14038	Sorghum	nucleus	31.55	14.84
Os08t0564800-01	Rice	extracellular	31.39	14.7
Zm00001d049894_P011	Maize	nucleus	30.91	14.6
Os08t0523600-01	Rice	cytosol, nucleus	2.27	14.58
VIT_08s0040g00740.t01	Wine grape	nucleus	9.55	14.5
TraesCS5D01G551100.1	Wheat	nucleus	9.87	14.22
CDY52868	Canola	cytosol	3.24	14.18
TraesCS7B01G493100.1	Wheat	nucleus	8.41	14.02
TraesCS4A01G315600.1	Wheat	nucleus	10.84	13.87
HORVU5Hr1G106220.2	Barley	cytosol, nucleus	10.68	11.87
CDY61380	Canola	extracellular, vacuole	7.28	10.98
CDY33381	Canola	cytosol, extracellular	5.66	10.84
CDY36590	Canola	cytosol	5.02	10.58
CDY36595	Canola	cytosol	5.66	10.26
CDY36589	Canola	nucleus	16.5	8.51
CDY33380	Canola	cytosol	5.66	7.73
CDY36591	Canola	cytosol	5.5	6.53

Protein Annotations

EnsemblPlants:CDY19982	EnsemblPlantsGene:GSBRNA2T00009804001	Gene3D:1.10.246.20	GO:A0A078G4U5	InterPro:MED15_KIX	PANTHER:PTHR33137
PFAM:PF16987	ProteinID:CDY19982	ProteinID:CDY19982.1	SEG:seg	UniParc:UPI0004EE5DEF	UniProt:A0A078G4U5
MapMan:15.3.3.3.5	:	:	:	:	:

Description

BnaA09g02690DBnaA09g02690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4U5]

Coordinates

chrLK032102:+:268131..270721

Molecular Weight (calculated)

69868.8 Da

IEP (calculated)

7.067

GRAVY (calculated)

-0.588

Length

618 amino acids

Sequence
(BLAST)

001: MEGSSNEQGG DSLTNDWRTY HEPGLRERVI YEIVKKLKKC CHQPSNENDI KKAAIKYEAK IYGMAKDKDA YLGKICRKVF SSHSHFRAQE QSLPTSLPYT
101: QTPTSQSNLN VPESSGLPTQ VPLTVSAAQN LKIQMSEEGV HSNLLPGHPQ REIQQLESEN LISQLMNGQD TQKNHPQNKG EEQEQTTPRV STSQQNNMAS
201: FNVHGPSLLG TQSQEVEQSQ PLMLQYLNDV HDWREETYHK IKVLKEKYGL VLSTFFKSIS DKLREIDSLR QQNMPVEWLT ASKATLEQVL AFLNVCKSSV
301: SEFHRDKFSL HEEKVLRFIE YHHLNVTRRA MKQQQVYLPP SHTHQTRPRM EPEDENSPMS TAAQEHLPPE PITERPIDRL IKAIQSASPE SLAQSVSEMR
401: SVISLSEMIA GLVNTIGGSR ARLVEDLSER TRFRAQQGDT NHTKRFKRSV TAISSSKVNK IEPSYALLQE IMEINGRLVE TVVSICNEDV CPSEVTSGTV
501: VVTCDYVPVA VSATFKALYN SGYISQIQPL RLLVPENYPS SPILLEKVIF DTASDHKFED LSARARSRFS LSMKEAMSLK EIAKVWDECA RATMLEYAER
601: HGGGTFSSKY GRWESVLA

Best Arabidopsis Sequence Match ( AT2G10440.2 )
(BLAST)

001: MEGNTNWKPN EQGGNRDAAN NRIDWRSQHE PELRQKVLSK IVCSLNDYRK VEKFKEKFHA HEEYKINDIA SKFEENFYSI ATDKNDYLRK LSETLHYIQR
101: TYTRVLASQV VVNQAQSLPA LLPYMQTTTS QQWLQQNTQS NLCVICFAKS GPYNRSRFSK TDTCSVTAAA TSSAKFVETT YSTAFSSIKL TKHSITDQKS
201: VFDTTVLIMN IIVASQDSTG KTVNVNAGNW QEETYQKIKK LKEMCLPVLS LMHQRVAEKL RETESLPPQP MQAQWIEKLK AGKLSMEHLM FFLNVHRSSV
301: SEKHRDKFSQ YEYHILKFTK SQTMVLRPTQ QQQGQFPPSQ TAMQTQSPQV HVSQSLYKEQ RRSRLMPSSQ NEASSLLQIR PKLDPRDENI IMASSGNVML
401: PSVKQNPRAV NTNISSVQSL QKQKRFHHRQ MQQQQPQQGN HQHQMQTNEM NDVRMRERVN IKARLLEQQV SSSQRQVPKQ ESNVSSSQIQ NHSSPQLVDQ
501: HILPATINKT GTPLNSSGSA FVAPAPSPVP GDSEMPISVE SPVSGVDEIN STLDSSSKLG TQETPLLFVP PPEPITERPI DRLIKAFQAA SPKSLAESVS
601: EISSVISMVD MIGGSFPSSG GSRAGLGEDL SERTRNFTTH EETNLSKRMK RSINIVPPDM SSQIDSYEQL SSLESEVVST TSSGLKVNNI APGYALLQEI
701: KETNGRLVET VVEICDEDSL GTIVTCTYAP VALSATFKDH YKSGKIAQIQ PLRLLFPMDY PYSSPIVLEE ISFDTSVHKY EDLSARTRSR FSLSMKEFSE
801: PGFSKGIAQT WNDCARATMV EYAERHGGGT FSSKYGAWET VLRAS

Arabidopsis Description

MED15CProbable mediator of RNA polymerase II transcription subunit 15c [Source:UniProtKB/Swiss-Prot;Acc:Q9SHV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.