Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY19982 | Canola | nucleus | 99.35 | 99.35 |
Bra025408.1-P | Field mustard | nucleus | 62.78 | 36.81 |
Bra040585.1-P | Field mustard | nucleus | 51.62 | 35.48 |
AT2G10440.1 | Thale cress | nucleus | 47.57 | 31.44 |
TraesCS1A01G346100.1 | Wheat | nucleus | 4.69 | 23.77 |
TraesCS1D01G348800.1 | Wheat | nucleus | 4.37 | 21.95 |
TraesCS1B01G359700.1 | Wheat | cytosol, mitochondrion, nucleus | 4.37 | 21.6 |
HORVU5Hr1G125120.1 | Barley | cytosol | 7.77 | 19.2 |
Bra026108.1-P | Field mustard | nucleus | 31.39 | 17.26 |
TraesCS7D01G546200.1 | Wheat | nucleus | 10.03 | 17.17 |
TraesCS2B01G599400.1 | Wheat | cytosol | 6.15 | 16.89 |
TraesCS2B01G598700.1 | Wheat | cytosol | 6.31 | 16.81 |
TraesCS2D01G594100.1 | Wheat | cytosol | 6.31 | 16.81 |
TraesCSU01G036900.1 | Wheat | cytosol | 6.15 | 16.74 |
Bra026749.1-P | Field mustard | nucleus | 33.66 | 16.6 |
GSMUA_Achr8P09800_001 | Banana | nucleus | 3.72 | 16.43 |
Bra016651.1-P | Field mustard | endoplasmic reticulum, vacuole | 35.11 | 16.17 |
HORVU7Hr1G118370.1 | Barley | nucleus | 31.72 | 16.03 |
KXG25352 | Sorghum | nucleus | 4.05 | 16.03 |
Bra026102.1-P | Field mustard | cytosol | 4.05 | 15.72 |
TraesCS7B01G177500.1 | Wheat | nucleus | 33.33 | 15.67 |
TraesCS1B01G433100.1 | Wheat | nucleus | 15.37 | 15.62 |
TraesCS7A01G283500.3 | Wheat | nucleus | 33.01 | 15.61 |
TraesCS7B01G495400.1 | Wheat | cytosol | 10.19 | 15.59 |
HORVU2Hr1G123080.2 | Barley | cytosol | 5.83 | 15.58 |
TraesCS7D01G281700.2 | Wheat | nucleus | 33.01 | 15.54 |
OQU80675 | Sorghum | nucleus | 10.68 | 15.53 |
HORVU7Hr1G060970.1 | Barley | nucleus | 32.85 | 15.46 |
TraesCS1D01G411400.1 | Wheat | nucleus | 15.05 | 15.3 |
TraesCS7D01G526100.1 | Wheat | nucleus | 31.88 | 15.14 |
Zm00001d031863_P013 | Maize | nucleus | 32.04 | 15.14 |
TraesCS7A01G540000.1 | Wheat | nucleus | 31.88 | 15.13 |
TraesCS1A01G403500.2 | Wheat | nucleus | 14.72 | 15.07 |
TraesCS7B01G460900.1 | Wheat | nucleus | 31.72 | 15.04 |
EES14038 | Sorghum | nucleus | 31.72 | 14.92 |
Bra026748.1-P | Field mustard | cytosol | 3.4 | 14.89 |
Os08t0564800-01 | Rice | extracellular | 31.55 | 14.77 |
Zm00001d049894_P011 | Maize | nucleus | 31.07 | 14.68 |
Os08t0523600-01 | Rice | cytosol, nucleus | 2.27 | 14.58 |
VIT_08s0040g00740.t01 | Wine grape | nucleus | 9.55 | 14.5 |
TraesCS5D01G551100.1 | Wheat | nucleus | 10.03 | 14.45 |
TraesCS4A01G315600.1 | Wheat | nucleus | 11.0 | 14.08 |
TraesCS7B01G493100.1 | Wheat | nucleus | 8.41 | 14.02 |
Bra028029.1-P | Field mustard | cytosol | 4.85 | 13.95 |
HORVU5Hr1G106220.2 | Barley | cytosol, nucleus | 11.0 | 12.23 |
Bra026104.1-P | Field mustard | mitochondrion | 3.56 | 11.06 |
Bra026103.1-P | Field mustard | cytosol | 5.83 | 10.56 |
Bra026106.1-P | Field mustard | nucleus | 16.99 | 8.61 |
Bra026105.1-P | Field mustard | cytosol | 8.09 | 4.75 |
Protein Annotations
EnsemblPlants:Bra036204.1 | EnsemblPlants:Bra036204.1-P | EnsemblPlantsGene:Bra036204 | Gene3D:1.10.246.20 | InterPro:MED15_KIX | PANTHER:PTHR33137 |
PFAM:PF16987 | SEG:seg | UniParc:UPI0002541E42 | UniProt:M4F548 | MapMan:15.3.3.3.5 | : |
Description
AT2G10440 (E=1e-069) | unknown protein
Coordinates
chrA09:-:2177268..2179842
Molecular Weight (calculated)
69764.7 Da
IEP (calculated)
7.162
GRAVY (calculated)
-0.601
Length
618 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGSSNEQGG DSLTNDWRTQ HEPGLRERVI YEIVKKLKKC CHQPSNENDI KKAAIKYEAK IYGMAKDKDA YLGKICRKVF SSHSPFRAQE QSLPTSLPYT
101: QTPTSQSNLN VPESSGLPTQ VPLTVSAAQN LKIQMSEEGV HSNKLPGHPQ REIQQLESEN LISQLMNGQD TQKNHPQNKG EEQEQTTPRV STSQQNNMAS
201: CNVHGPSLLG TQSQEVEQSQ PLMLQYLNDV HDWREETYHK IKVLKEKYGL VLSTFFKSIS DKLREIDSLR QQNMPVEWLT ASKATLEQVL AFLNVCKSSV
301: SEFHRDKFSL HEEKVLRFIE YHHLNVTRRA MKQQQVYLPP SHTHQTRPRM EPEDENSPMS TAAQEHLPPE PITERPIDRL IKAIQSASPE SLAQSVSEMR
401: SVISLSEMIA GLVNTIGGSR ARLVEDLSER TRFRAQQGDT NHTKRFKRSV TAISSSKVNK IEPSYALLQE IMEINGRLVE TVVSICNEDV CPSEVTSGTV
501: VVTCDYVPVA VSATFKALYN SGYISQIQPL RLLVPENYPS SPILLEKVIF DTASDHKFED LSARARSRFS LSMKEAMSLK EIAKVWDECA RATMLEYAER
601: HGGGTFSSKY GRWESVLA
101: QTPTSQSNLN VPESSGLPTQ VPLTVSAAQN LKIQMSEEGV HSNKLPGHPQ REIQQLESEN LISQLMNGQD TQKNHPQNKG EEQEQTTPRV STSQQNNMAS
201: CNVHGPSLLG TQSQEVEQSQ PLMLQYLNDV HDWREETYHK IKVLKEKYGL VLSTFFKSIS DKLREIDSLR QQNMPVEWLT ASKATLEQVL AFLNVCKSSV
301: SEFHRDKFSL HEEKVLRFIE YHHLNVTRRA MKQQQVYLPP SHTHQTRPRM EPEDENSPMS TAAQEHLPPE PITERPIDRL IKAIQSASPE SLAQSVSEMR
401: SVISLSEMIA GLVNTIGGSR ARLVEDLSER TRFRAQQGDT NHTKRFKRSV TAISSSKVNK IEPSYALLQE IMEINGRLVE TVVSICNEDV CPSEVTSGTV
501: VVTCDYVPVA VSATFKALYN SGYISQIQPL RLLVPENYPS SPILLEKVIF DTASDHKFED LSARARSRFS LSMKEAMSLK EIAKVWDECA RATMLEYAER
601: HGGGTFSSKY GRWESVLA
001: MEGNTNWKPN EQGGNRDAAN NRIDWRSQHE PELRQKVLSK IVCSLNDYRK VEKFKEKFHA HEEYKINDIA SKFEENFYSI ATDKNDYLRK LSETLHYIQR
101: TYTRVLASQV VVNQAQSLPA LLPYMQTTTS QQWLQQNTQS NLCVICFAKS GPYNRSRFSK TDTCSVTAAA TSSAKFVETT YSTAFSSIKL TKHSITDQKS
201: VFDTTVLIMN IIVASQDSTG KTVNVNAGNW QEETYQKIKK LKEMCLPVLS LMHQRVAEKL RETESLPPQP MQAQWIEKLK AGKLSMEHLM FFLNVHRSSV
301: SEKHRDKFSQ YEYHILKFTK SQTMVLRPTQ QQQGQFPPSQ TAMQTQSPQV HVSQSLYKEQ RRSRLMPSSQ NEASSLLQIR PKLDPRDENI IMASSGNVML
401: PSVKQNPRAV NTNISSVQSL QKQKRFHHRQ MQQQQPQQGN HQHQMQTNEM NDVRMRERVN IKARLLEQQV SSSQRQVPKQ ESNVSSSQIQ NHSSPQLVDQ
501: HILPATINKT GTPLNSSGSA FVAPAPSPVP GDSEMPISVE SPVSGVDEIN STLDSSSKLG TQETPLLFVP PPEPITERPI DRLIKAFQAA SPKSLAESVS
601: EISSVISMVD MIGGSFPSSG GSRAGLGEDL SERTRNFTTH EETNLSKRMK RSINIVPPDM SSQIDSYEQL SSLESEVVST TSSGLKVNNI APGYALLQEI
701: KETNGRLVET VVEICDEDSL GTIVTCTYAP VALSATFKDH YKSGKIAQIQ PLRLLFPMDY PYSSPIVLEE ISFDTSVHKY EDLSARTRSR FSLSMKEFSE
801: PGFSKGIAQT WNDCARATMV EYAERHGGGT FSSKYGAWET VLRAS
101: TYTRVLASQV VVNQAQSLPA LLPYMQTTTS QQWLQQNTQS NLCVICFAKS GPYNRSRFSK TDTCSVTAAA TSSAKFVETT YSTAFSSIKL TKHSITDQKS
201: VFDTTVLIMN IIVASQDSTG KTVNVNAGNW QEETYQKIKK LKEMCLPVLS LMHQRVAEKL RETESLPPQP MQAQWIEKLK AGKLSMEHLM FFLNVHRSSV
301: SEKHRDKFSQ YEYHILKFTK SQTMVLRPTQ QQQGQFPPSQ TAMQTQSPQV HVSQSLYKEQ RRSRLMPSSQ NEASSLLQIR PKLDPRDENI IMASSGNVML
401: PSVKQNPRAV NTNISSVQSL QKQKRFHHRQ MQQQQPQQGN HQHQMQTNEM NDVRMRERVN IKARLLEQQV SSSQRQVPKQ ESNVSSSQIQ NHSSPQLVDQ
501: HILPATINKT GTPLNSSGSA FVAPAPSPVP GDSEMPISVE SPVSGVDEIN STLDSSSKLG TQETPLLFVP PPEPITERPI DRLIKAFQAA SPKSLAESVS
601: EISSVISMVD MIGGSFPSSG GSRAGLGEDL SERTRNFTTH EETNLSKRMK RSINIVPPDM SSQIDSYEQL SSLESEVVST TSSGLKVNNI APGYALLQEI
701: KETNGRLVET VVEICDEDSL GTIVTCTYAP VALSATFKDH YKSGKIAQIQ PLRLLFPMDY PYSSPIVLEE ISFDTSVHKY EDLSARTRSR FSLSMKEFSE
801: PGFSKGIAQT WNDCARATMV EYAERHGGGT FSSKYGAWET VLRAS
Arabidopsis Description
MED15CProbable mediator of RNA polymerase II transcription subunit 15c [Source:UniProtKB/Swiss-Prot;Acc:Q9SHV7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.