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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY19982 Canola nucleus 99.35 99.35
Bra025408.1-P Field mustard nucleus 62.78 36.81
Bra040585.1-P Field mustard nucleus 51.62 35.48
AT2G10440.1 Thale cress nucleus 47.57 31.44
TraesCS1A01G346100.1 Wheat nucleus 4.69 23.77
TraesCS1D01G348800.1 Wheat nucleus 4.37 21.95
TraesCS1B01G359700.1 Wheat cytosol, mitochondrion, nucleus 4.37 21.6
HORVU5Hr1G125120.1 Barley cytosol 7.77 19.2
Bra026108.1-P Field mustard nucleus 31.39 17.26
TraesCS7D01G546200.1 Wheat nucleus 10.03 17.17
TraesCS2B01G599400.1 Wheat cytosol 6.15 16.89
TraesCS2B01G598700.1 Wheat cytosol 6.31 16.81
TraesCS2D01G594100.1 Wheat cytosol 6.31 16.81
TraesCSU01G036900.1 Wheat cytosol 6.15 16.74
Bra026749.1-P Field mustard nucleus 33.66 16.6
GSMUA_Achr8P09800_001 Banana nucleus 3.72 16.43
Bra016651.1-P Field mustard endoplasmic reticulum, vacuole 35.11 16.17
HORVU7Hr1G118370.1 Barley nucleus 31.72 16.03
KXG25352 Sorghum nucleus 4.05 16.03
Bra026102.1-P Field mustard cytosol 4.05 15.72
TraesCS7B01G177500.1 Wheat nucleus 33.33 15.67
TraesCS1B01G433100.1 Wheat nucleus 15.37 15.62
TraesCS7A01G283500.3 Wheat nucleus 33.01 15.61
TraesCS7B01G495400.1 Wheat cytosol 10.19 15.59
HORVU2Hr1G123080.2 Barley cytosol 5.83 15.58
TraesCS7D01G281700.2 Wheat nucleus 33.01 15.54
OQU80675 Sorghum nucleus 10.68 15.53
HORVU7Hr1G060970.1 Barley nucleus 32.85 15.46
TraesCS1D01G411400.1 Wheat nucleus 15.05 15.3
TraesCS7D01G526100.1 Wheat nucleus 31.88 15.14
Zm00001d031863_P013 Maize nucleus 32.04 15.14
TraesCS7A01G540000.1 Wheat nucleus 31.88 15.13
TraesCS1A01G403500.2 Wheat nucleus 14.72 15.07
TraesCS7B01G460900.1 Wheat nucleus 31.72 15.04
EES14038 Sorghum nucleus 31.72 14.92
Bra026748.1-P Field mustard cytosol 3.4 14.89
Os08t0564800-01 Rice extracellular 31.55 14.77
Zm00001d049894_P011 Maize nucleus 31.07 14.68
Os08t0523600-01 Rice cytosol, nucleus 2.27 14.58
VIT_08s0040g00740.t01 Wine grape nucleus 9.55 14.5
TraesCS5D01G551100.1 Wheat nucleus 10.03 14.45
TraesCS4A01G315600.1 Wheat nucleus 11.0 14.08
TraesCS7B01G493100.1 Wheat nucleus 8.41 14.02
Bra028029.1-P Field mustard cytosol 4.85 13.95
HORVU5Hr1G106220.2 Barley cytosol, nucleus 11.0 12.23
Bra026104.1-P Field mustard mitochondrion 3.56 11.06
Bra026103.1-P Field mustard cytosol 5.83 10.56
Bra026106.1-P Field mustard nucleus 16.99 8.61
Bra026105.1-P Field mustard cytosol 8.09 4.75
Protein Annotations
EnsemblPlants:Bra036204.1EnsemblPlants:Bra036204.1-PEnsemblPlantsGene:Bra036204Gene3D:1.10.246.20InterPro:MED15_KIXPANTHER:PTHR33137
PFAM:PF16987SEG:segUniParc:UPI0002541E42UniProt:M4F548MapMan:15.3.3.3.5:
Description
AT2G10440 (E=1e-069) | unknown protein
Coordinates
chrA09:-:2177268..2179842
Molecular Weight (calculated)
69764.7 Da
IEP (calculated)
7.162
GRAVY (calculated)
-0.601
Length
618 amino acids
Sequence
(BLAST)
001: MEGSSNEQGG DSLTNDWRTQ HEPGLRERVI YEIVKKLKKC CHQPSNENDI KKAAIKYEAK IYGMAKDKDA YLGKICRKVF SSHSPFRAQE QSLPTSLPYT
101: QTPTSQSNLN VPESSGLPTQ VPLTVSAAQN LKIQMSEEGV HSNKLPGHPQ REIQQLESEN LISQLMNGQD TQKNHPQNKG EEQEQTTPRV STSQQNNMAS
201: CNVHGPSLLG TQSQEVEQSQ PLMLQYLNDV HDWREETYHK IKVLKEKYGL VLSTFFKSIS DKLREIDSLR QQNMPVEWLT ASKATLEQVL AFLNVCKSSV
301: SEFHRDKFSL HEEKVLRFIE YHHLNVTRRA MKQQQVYLPP SHTHQTRPRM EPEDENSPMS TAAQEHLPPE PITERPIDRL IKAIQSASPE SLAQSVSEMR
401: SVISLSEMIA GLVNTIGGSR ARLVEDLSER TRFRAQQGDT NHTKRFKRSV TAISSSKVNK IEPSYALLQE IMEINGRLVE TVVSICNEDV CPSEVTSGTV
501: VVTCDYVPVA VSATFKALYN SGYISQIQPL RLLVPENYPS SPILLEKVIF DTASDHKFED LSARARSRFS LSMKEAMSLK EIAKVWDECA RATMLEYAER
601: HGGGTFSSKY GRWESVLA
Best Arabidopsis Sequence Match ( AT2G10440.2 )
(BLAST)
001: MEGNTNWKPN EQGGNRDAAN NRIDWRSQHE PELRQKVLSK IVCSLNDYRK VEKFKEKFHA HEEYKINDIA SKFEENFYSI ATDKNDYLRK LSETLHYIQR
101: TYTRVLASQV VVNQAQSLPA LLPYMQTTTS QQWLQQNTQS NLCVICFAKS GPYNRSRFSK TDTCSVTAAA TSSAKFVETT YSTAFSSIKL TKHSITDQKS
201: VFDTTVLIMN IIVASQDSTG KTVNVNAGNW QEETYQKIKK LKEMCLPVLS LMHQRVAEKL RETESLPPQP MQAQWIEKLK AGKLSMEHLM FFLNVHRSSV
301: SEKHRDKFSQ YEYHILKFTK SQTMVLRPTQ QQQGQFPPSQ TAMQTQSPQV HVSQSLYKEQ RRSRLMPSSQ NEASSLLQIR PKLDPRDENI IMASSGNVML
401: PSVKQNPRAV NTNISSVQSL QKQKRFHHRQ MQQQQPQQGN HQHQMQTNEM NDVRMRERVN IKARLLEQQV SSSQRQVPKQ ESNVSSSQIQ NHSSPQLVDQ
501: HILPATINKT GTPLNSSGSA FVAPAPSPVP GDSEMPISVE SPVSGVDEIN STLDSSSKLG TQETPLLFVP PPEPITERPI DRLIKAFQAA SPKSLAESVS
601: EISSVISMVD MIGGSFPSSG GSRAGLGEDL SERTRNFTTH EETNLSKRMK RSINIVPPDM SSQIDSYEQL SSLESEVVST TSSGLKVNNI APGYALLQEI
701: KETNGRLVET VVEICDEDSL GTIVTCTYAP VALSATFKDH YKSGKIAQIQ PLRLLFPMDY PYSSPIVLEE ISFDTSVHKY EDLSARTRSR FSLSMKEFSE
801: PGFSKGIAQT WNDCARATMV EYAERHGGGT FSSKYGAWET VLRAS
Arabidopsis Description
MED15CProbable mediator of RNA polymerase II transcription subunit 15c [Source:UniProtKB/Swiss-Prot;Acc:Q9SHV7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.