Factsheet for AT2G10440.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85281	Canola	nucleus	47.49	48.16
CDX86356	Canola	nucleus	48.34	47.88
Bra036204.1-P	Field mustard	nucleus	31.44	47.57
CDY19982	Canola	nucleus	31.34	47.41
Bra025408.1-P	Field mustard	nucleus	48.98	43.45
CDY00085	Canola	nucleus	38.61	41.98
CDY35787	Canola	nucleus	38.61	40.56
CDY66823	Canola	cytosol, nucleus	38.72	40.31
Bra040585.1-P	Field mustard	nucleus	38.72	40.27
CDY19980	Canola	nucleus	24.39	38.45
CDX81731	Canola	plastid	23.1	25.65
AT1G15770.1	Thale cress	cytosol	8.02	25.6
HORVU5Hr1G125120.1	Barley	cytosol	5.67	21.2
TraesCS7D01G546200.1	Wheat	nucleus	8.02	20.78
TraesCS1D01G348800.1	Wheat	nucleus	2.67	20.33
HORVU7Hr1G118370.1	Barley	nucleus	25.24	19.3
TraesCS4A01G315600.1	Wheat	nucleus	9.95	19.25
TraesCS7B01G495400.1	Wheat	cytosol	8.24	19.06
TraesCS7D01G526100.1	Wheat	nucleus	26.42	18.99
TraesCS7A01G540000.1	Wheat	nucleus	26.31	18.89
TraesCS1A01G346100.1	Wheat	nucleus	2.46	18.85
AT1G15780.2	Thale cress	nucleus	27.49	18.81
TraesCS7D01G281700.2	Wheat	nucleus	26.42	18.81
TraesCS7B01G460900.1	Wheat	nucleus	26.2	18.8
TraesCS7A01G283500.3	Wheat	nucleus	26.2	18.75
TraesCS7B01G177500.1	Wheat	nucleus	26.31	18.71
HORVU7Hr1G060970.1	Barley	nucleus	26.2	18.66
Zm00001d031863_P013	Maize	nucleus	25.88	18.5
EES14038	Sorghum	nucleus	25.99	18.49
Zm00001d049894_P011	Maize	nucleus	25.45	18.2
Os08t0564800-01	Rice	extracellular	25.67	18.18
TraesCS1B01G433100.1	Wheat	nucleus	11.55	17.76
TraesCS1D01G411400.1	Wheat	nucleus	11.55	17.76
TraesCS1A01G403500.2	Wheat	nucleus	11.44	17.72
TraesCS1B01G359700.1	Wheat	cytosol, mitochondrion, nucleus	2.35	17.6
TraesCS5D01G551100.1	Wheat	nucleus	8.02	17.48
HORVU2Hr1G123080.2	Barley	cytosol	4.17	16.88
KXG25352	Sorghum	nucleus	2.78	16.67
OQU80675	Sorghum	nucleus	7.49	16.47
TraesCS2D01G594100.1	Wheat	cytosol	4.06	16.38
TraesCS2B01G599400.1	Wheat	cytosol	3.85	16.0
TraesCS2B01G598700.1	Wheat	cytosol	3.96	15.95
TraesCS7B01G493100.1	Wheat	nucleus	6.31	15.9
TraesCSU01G036900.1	Wheat	cytosol	3.85	15.86
HORVU5Hr1G106220.2	Barley	cytosol, nucleus	8.24	13.85
AT1G15790.3	Thale cress	cytosol	2.67	13.23
VIT_08s0040g00740.t01	Wine grape	nucleus	5.67	13.02
GSMUA_Achr8P09800_001	Banana	nucleus	1.71	11.43
Os08t0523600-01	Rice	cytosol, nucleus	1.07	10.42

Protein Annotations

MapMan:15.3.3.3.5	EntrezGene:815503	ProteinID:AAD28655.1	ProteinID:AEC06144.1	ProteinID:AEC06145.1	ArrayExpress:AT2G10440
EnsemblPlantsGene:AT2G10440	RefSeq:AT2G10440	TAIR:AT2G10440	RefSeq:AT2G10440-TAIR-G	EnsemblPlants:AT2G10440.1	TAIR:AT2G10440.1
Unigene:At.52701	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682
GO:GO:0003712	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0031490	InterPro:MED15_KIX	RefSeq:NP_001154512.1	RefSeq:NP_178842.1
PFAM:PF16987	PANTHER:PTHR33137	PANTHER:PTHR33137:SF4	UniProt:Q9SHV7	UniParc:UPI00000A4147	SEG:seg

Description

MED15CProbable mediator of RNA polymerase II transcription subunit 15c [Source:UniProtKB/Swiss-Prot;Acc:Q9SHV7]

Coordinates

chr2:-:4013752..4018046

Molecular Weight (calculated)

105512.0 Da

IEP (calculated)

8.994

GRAVY (calculated)

-0.736

Length

935 amino acids

Sequence
(BLAST)

001: MEGNTNWKPN EQGGNRDAAN NRIDWRSQHE PELRQKVLSK IVEKFKEKFH AHEEYKINDI ASKFEENFYS IATDKTTTSQ QWLQQNTQSN LCVICFAKSG
101: PYNRSRFSKT DTCSVTAAAT SSAKFVETTY STAFSSIKLT KHSITDQKSV FDTTEQKRQE QEQLINQLTN LPTSRPNNRD QQGAFQVSSS QQNNNVTLHA
201: MSQQKNNLQS MTRGQQVGQS QPMMSQQYRQ QYPMQQDPQN RNLQKHLDFV QNNTNQFQAA SSLRQTQNIT DQQNQPQQLE RANPSILIMN IIVASQDSTG
301: KTVNVNAGNW QEETYQKIKK LKEMCLPVLS LMHQRVAEKL RETESLPPQP MQAQWIEKLK AGKLSMEHLM FFLNVHRSSV SEKHRDKFSQ YEYHILKFTK
401: SQTMVLRPTQ QQQGQFPPSQ TAMQTQSPQV HVSQSLYKEQ RRSRLMPSSQ NEASSLLQIR PKLDPRDENI IMASSGNVML PSVKQNPRAV NTNISSVQSL
501: QKQKRFHHRQ MQQQQPQQGN HQHQMQTNEM NDVRMRERVN IKARLLEQQV SSSQRQVPKQ ESNVSSSQIQ NHSSPQLVDQ HILPATINKT GTPLNSSGSA
601: FVAPAPSPVP GDSEMPISVE SPVSGVDEIN STLDSSSKLG TQETPLLFVP PPEPITERPI DRLIKAFQAA SPKSLAESVS EISSVISMVD MIGGSFPSSG
701: GSRAGLGEDL SERTRNFTTH EETNLSKRMK RSINIVPPDM SSQIDSYEQL SSLESEVVST TSSGLKVNNI APGYALLQEI KETNGRLVET VVEICDEDSL
801: GTIVTCTYAP VALSATFKDH YKSGKIIFYV SKCLMQAQIQ PLRLLFPMDY PYSSPIVLEE ISFDTSVHKY EDLSARTRSR FSLSMKEFSE PGFSKGIAQT
901: WNDCARATMV EYAERHGGGT FSSKYGAWET VLRAS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.