Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY33382 | Canola | nucleus | 15.02 | 12.29 |
| AT1G15780.2 | Thale cress | nucleus | 50.51 | 10.83 |
| Zm00001d049894_P011 | Maize | nucleus | 37.54 | 8.41 |
| Os08t0564800-01 | Rice | extracellular | 37.2 | 8.26 |
| KRH20610 | Soybean | cytosol | 19.45 | 8.12 |
| HORVU7Hr1G118370.1 | Barley | nucleus | 33.79 | 8.09 |
| AT2G10440.1 | Thale cress | nucleus | 25.6 | 8.02 |
| TraesCS7D01G281700.2 | Wheat | nucleus | 35.49 | 7.92 |
| EES14038 | Sorghum | nucleus | 35.49 | 7.91 |
| TraesCS7B01G177500.1 | Wheat | nucleus | 35.15 | 7.83 |
| TraesCS7B01G460900.1 | Wheat | nucleus | 34.81 | 7.83 |
| TraesCS7A01G283500.3 | Wheat | nucleus | 34.81 | 7.8 |
| Zm00001d031863_P013 | Maize | nucleus | 34.81 | 7.8 |
| TraesCS7D01G526100.1 | Wheat | nucleus | 34.13 | 7.69 |
| TraesCS7A01G540000.1 | Wheat | nucleus | 33.79 | 7.6 |
| HORVU7Hr1G060970.1 | Barley | nucleus | 32.76 | 7.31 |
| HORVU5Hr1G125120.1 | Barley | cytosol | 6.14 | 7.2 |
| OQU80675 | Sorghum | nucleus | 8.19 | 5.65 |
| AT1G15790.3 | Thale cress | cytosol | 3.07 | 4.76 |
| TraesCS5D01G551100.1 | Wheat | nucleus | 6.83 | 4.66 |
| TraesCS7D01G546200.1 | Wheat | nucleus | 5.46 | 4.43 |
| TraesCS4A01G315600.1 | Wheat | nucleus | 7.17 | 4.35 |
| TraesCS7B01G495400.1 | Wheat | cytosol | 5.46 | 3.96 |
| TraesCS7B01G493100.1 | Wheat | nucleus | 4.44 | 3.5 |
| TraesCS1A01G403500.2 | Wheat | nucleus | 7.17 | 3.48 |
| TraesCS1B01G433100.1 | Wheat | nucleus | 6.83 | 3.29 |
| TraesCS1D01G411400.1 | Wheat | nucleus | 6.48 | 3.12 |
| HORVU5Hr1G106220.2 | Barley | cytosol, nucleus | 5.8 | 3.06 |
| KXG25352 | Sorghum | nucleus | 1.37 | 2.56 |
| TraesCS1D01G348800.1 | Wheat | nucleus | 1.02 | 2.44 |
| HORVU2Hr1G123080.2 | Barley | cytosol | 1.71 | 2.16 |
| PGSC0003DMT400082469 | Potato | extracellular | 0.68 | 2.02 |
| TraesCS1A01G346100.1 | Wheat | nucleus | 0.68 | 1.64 |
| TraesCS2B01G599400.1 | Wheat | cytosol | 1.02 | 1.33 |
| TraesCSU01G036900.1 | Wheat | cytosol | 1.02 | 1.32 |
| TraesCS2D01G594100.1 | Wheat | cytosol | 1.02 | 1.29 |
| TraesCS2B01G598700.1 | Wheat | cytosol | 1.02 | 1.29 |
| TraesCS1B01G359700.1 | Wheat | cytosol, mitochondrion, nucleus | 0.34 | 0.8 |
| GSMUA_Achr8P09800_001 | Banana | nucleus | 0.34 | 0.71 |
| Os08t0523600-01 | Rice | cytosol, nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.3.3.3.5 | EntrezGene:838146 | ProteinID:AAF82147.1 | ProteinID:AEE29362.1 | ArrayExpress:AT1G15770 | EnsemblPlantsGene:AT1G15770 |
| RefSeq:AT1G15770 | TAIR:AT1G15770 | RefSeq:AT1G15770-TAIR-G | EnsemblPlants:AT1G15770.1 | TAIR:AT1G15770.1 | UniProt:F4I169 |
| GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| RefSeq:NP_173029.2 | PANTHER:PTHR33137 | PANTHER:PTHR33137:SF4 | UniParc:UPI0001738FAC | SEG:seg | : |
Description
MED15BProbable mediator of RNA polymerase II transcription subunit 15b [Source:UniProtKB/Swiss-Prot;Acc:F4I169]
Coordinates
chr1:-:5426708..5428280
Molecular Weight (calculated)
32659.6 Da
IEP (calculated)
9.298
GRAVY (calculated)
-0.335
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MIILLFFVDQ IHQRDLNEIY QRVAAKLQQE DSLSHQKQRS DQFEKLKRGK TVLEGMLRFL SLSKSNIKPD LKDSMDYRKN NIMNFLNMQS LRKTVQKLQL
101: TKSEIQPMQQ PLSQTVQDQS HDDQTTLQMQ SMSMQGAGSR VQQIRQGVLQ SLEIGTPGIS ASPLLPELTS PDGNIINPLT STCGKSSATE LPIERLIRAM
201: KSISPQALSS AVCDIRSVVS MVDRIAGSVP GKGSRASFGV DLVAMTKCHL QERNFMTQDG DHEKEASDNP NAIKCCFIGR KALVIATSIL LVW
101: TKSEIQPMQQ PLSQTVQDQS HDDQTTLQMQ SMSMQGAGSR VQQIRQGVLQ SLEIGTPGIS ASPLLPELTS PDGNIINPLT STCGKSSATE LPIERLIRAM
201: KSISPQALSS AVCDIRSVVS MVDRIAGSVP GKGSRASFGV DLVAMTKCHL QERNFMTQDG DHEKEASDNP NAIKCCFIGR KALVIATSIL LVW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.