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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • nucleus 2
  • plastid 2
  • cytosol 1
  • mitochondrion 1
  • extracellular 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, extracellular, mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:extracellular
 extracellular: 22313117
msms PMID: 22313117 doi
S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto
Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH20610 Soybean cytosol 55.56 7.83
Zm00001d031863_P013 Maize nucleus 68.69 5.2
EES14038 Sorghum nucleus 68.69 5.18
Zm00001d049894_P011 Maize nucleus 67.68 5.12
Os08t0564800-01 Rice extracellular 66.67 5.0
TraesCS7A01G283500.3 Wheat nucleus 65.66 4.97
TraesCS7D01G281700.2 Wheat nucleus 65.66 4.95
TraesCS7B01G177500.1 Wheat nucleus 65.66 4.94
TraesCS7A01G540000.1 Wheat nucleus 62.63 4.76
TraesCS7B01G460900.1 Wheat nucleus 62.63 4.76
HORVU7Hr1G118370.1 Barley nucleus 58.59 4.74
HORVU7Hr1G060970.1 Barley nucleus 62.63 4.72
TraesCS7D01G526100.1 Wheat nucleus 61.62 4.69
TraesCS2D01G594100.1 Wheat cytosol 9.09 3.88
TraesCS2B01G599400.1 Wheat cytosol 8.08 3.56
TraesCSU01G036900.1 Wheat cytosol 8.08 3.52
HORVU2Hr1G123080.2 Barley cytosol 8.08 3.46
TraesCS2B01G598700.1 Wheat cytosol 7.07 3.02
PGSC0003DMT400027566 Potato mitochondrion, nucleus 4.04 1.65
CDY33382 Canola nucleus 3.03 0.84
PGSC0003DMT400090172 Potato cytosol 1.01 0.74
AT1G15770.1 Thale cress cytosol 2.02 0.68
TraesCS1B01G433100.1 Wheat nucleus 4.04 0.66
TraesCS1D01G411400.1 Wheat nucleus 4.04 0.66
TraesCS1A01G403500.2 Wheat nucleus 3.03 0.5
TraesCS1B01G359700.1 Wheat cytosol, mitochondrion, nucleus 0.0 0.0
GSMUA_Achr8P09800_001 Banana nucleus 0.0 0.0
HORVU5Hr1G106220.2 Barley cytosol, nucleus 0.0 0.0
TraesCS7D01G546200.1 Wheat nucleus 0.0 0.0
HORVU5Hr1G125120.1 Barley cytosol 0.0 0.0
KXG25352 Sorghum nucleus 0.0 0.0
TraesCS7B01G495400.1 Wheat cytosol 0.0 0.0
TraesCS7B01G493100.1 Wheat nucleus 0.0 0.0
OQU80675 Sorghum nucleus 0.0 0.0
Os08t0523600-01 Rice cytosol, nucleus 0.0 0.0
PGSC0003DMT400019244 Potato cytosol 0.0 0.0
PGSC0003DMT400022608 Potato cytosol 0.0 0.0
TraesCS5D01G551100.1 Wheat nucleus 0.0 0.0
TraesCS4A01G315600.1 Wheat nucleus 0.0 0.0
TraesCS1D01G348800.1 Wheat nucleus 0.0 0.0
TraesCS1A01G346100.1 Wheat nucleus 0.0 0.0
Protein Annotations
EnsemblPlants:PGSC0003DMT400082469EnsemblPlantsGene:PGSC0003DMG400032554PANTHER:PTHR33137PGSC:PGSC0003DMG400032554UniParc:UPI000296C062UniProt:M1D605
MapMan:15.3.3.3.5:::::
Description
Transcription cofactor [Source:PGSC_GENE;Acc:PGSC0003DMG400032554]
Coordinates
chr4:+:5153966..5155876
Molecular Weight (calculated)
10938.1 Da
IEP (calculated)
8.312
GRAVY (calculated)
-0.194
Length
99 amino acids
Sequence
(BLAST)
1: MSPIQPLRLL VPINYPNCSP ILLDKFPVEV SKEYEDLSTK AKSRFSVSLR SLSQPMSLKD IAKTWDVCAR AVICEYAQQS GGGTFSSKYG SWENCSTAA
Best Arabidopsis Sequence Match ( AT1G15780.1 )
(BLAST)
0001: MDNNNWRPSL PNGEPAMDTG DWRTQLPPDS RQKIVNKIME TLKKHLPFSG PEGINELRRI AARFEEKIFS GALNQTDYLR KISMKMLTME TKSQNAAGSS
0101: AAIPAANNGT SIDSIPTNQG QLLPGSLSTN QSQAPQPLLS QTMQNNTASG MTGSTALPSS MPPVSSITNN NTTSVVNQNA NMQNVAGMLQ DSSGQHGLSS
0201: NMFSGPQRQM LGRPHAMSSQ QQQQPYLYQQ QLQQQLLKQN FQSGNVPNPN SLLPSHIQQQ QQNVLQPNQL HSSQQPGVPT SATQPSTVNS APLQGLHTNQ
0301: QSSPQLSSQQ TTQSMLRQHQ SSMLRQHPQS QQASGIHQQQ SSLPQQSISP LQQQPTQLMR QQAANSSGIQ QKQMMGQHVV GDMQQQHQQR LLNQQNNVMN
0401: IQQQQSQQQP LQQPQQQQKQ QPPAQQQLMS QQNSLQATHQ NPLGTQSNVA GLQQPQQQML NSQVGNSSLQ NNQHSVHMLS QPTVGLQRTH QAGHGLYSSQ
0501: GQQSQNQPSQ QQMMPQLQSH HQQLGLQQQP NLLQQDVQQR LQASGQVTGS LLPPQNVVDQ QRQLYQSQRT LPEMPSSSLD STAQTESANG GDWQEEVYQK
0601: IKSMKETYLP DLNEIYQRVA AKLQQDSMPQ QQRSDQLEKL RQFKTMLERM IQFLSVSKSN IMPALKDKVA YYEKQIIGFL NMHRPRKPVQ QGQLPQSQMQ
0701: PMQQPQSQTV QDQSHDNQTN PQMQSMSMQG AGPRAQQSSM TNMQSNVLSS RPGVSAPQQN IPSSIPASSL ESGQGNTLNN GQQVAMGSMQ QNTSQLVNNS
0801: SASAQSGLST LQSNVNQPQL SSSLLQHQHL KQQQDQQMQL KQQFQQRQMQ QQQLQARQQQ QQQQLQARQQ AAQLQQMNDM NDLTSRQGMN VSRGMFQQHS
0901: MQGQRANYPL QQLKPGAVSS PQLLQGASPQ MSQHLSPQVD QKNTVNKMGT PLQPANSPFV VPSPSSTPLA PSPMQVDSEK PGSSSLSMGN IARQQATGMQ
1001: GVVQSLAIGT PGISASPLLQ EFTSPDGNIL NSSTITSGKP SATELPIERL IRAVKSISPQ ALSSAVSDIG SVVSMVDRIA GSAPGNGSRA SVGEDLVAMT
1101: KCRLQARNFM TQEGMMATKK MKRHTTAMPL SVASLGGSVG DNYKQFAGSE TSDLESTATS DGKKARTETE HALLEEIKEI NQRLIDTVVE ISDDEDAADP
1201: SEVAISSIGC EGTTVRFSFI AVSLSPALKA HLSSTQMSPI QPLRLLVPCS YPNGSPSLLD KLPVETSKEN EDLSSKAMAR FNILLRSLSQ PMSLKDIAKT
1301: WDACARAVIC EYAQQFGGGT FSSKYGTWEK YVAAS
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Oth /.../aryotes - 38082 (source: NCBI BLink). [Source:TAIR;Acc:AT1G15780]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.