Factsheet for TraesCS5D01G551100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G315600.1	Wheat	nucleus	81.35	72.26
TraesCS1D01G348800.1	Wheat	nucleus	18.18	63.41
HORVU5Hr1G125120.1	Barley	cytosol	36.36	62.4
TraesCS7D01G546200.1	Wheat	nucleus	41.72	49.58
TraesCS1D01G411400.1	Wheat	nucleus	63.17	44.57
GSMUA_Achr8P09790_001	Banana	cytosol	7.69	41.25
VIT_13s0067g02230.t01	Wine grape	mitochondrion	7.93	37.36
TraesCS2D01G594100.1	Wheat	cytosol	19.35	35.78
KRH45070	Soybean	cytosol	7.69	32.04
KRH08040	Soybean	cytosol	7.69	32.04
CDY52868	Canola	cytosol	10.49	31.91
Bra026748.1-P	Field mustard	cytosol	10.49	31.91
KRH52764	Soybean	nucleus	15.15	26.64
TraesCS7D01G281700.2	Wheat	nucleus	80.89	26.43
TraesCS7D01G526100.1	Wheat	nucleus	75.76	24.98
CDY33382	Canola	nucleus	17.48	20.95
GSMUA_Achr11P...	Banana	nucleus	50.58	16.99
GSMUA_Achr8P09780_001	Banana	nucleus	49.65	15.79
CDY33381	Canola	cytosol, extracellular	9.56	12.69
CDX81731	Canola	plastid	24.48	12.47
CDY35787	Canola	nucleus	25.17	12.13
CDY66823	Canola	cytosol, nucleus	24.48	11.69
Bra040585.1-P	Field mustard	nucleus	24.48	11.68
CDY19980	Canola	nucleus	15.62	11.3
CDY36590	Canola	cytosol	7.69	11.26
CDX85281	Canola	nucleus	22.61	10.52
Bra036204.1-P	Field mustard	nucleus	14.45	10.03
CDY19982	Canola	nucleus	14.22	9.87
Bra025408.1-P	Field mustard	nucleus	23.31	9.49
CDY00085	Canola	nucleus	18.18	9.07
CDX86356	Canola	nucleus	19.81	9.0
KRH20610	Soybean	cytosol	14.22	8.69
AT2G10440.1	Thale cress	nucleus	17.48	8.02
AT1G15770.1	Thale cress	cytosol	4.66	6.83
Bra026105.1-P	Field mustard	cytosol	11.89	4.84
PGSC0003DMT400082469	Potato	extracellular	0.0	0.0
CDY19981	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS5D01G551100.1	EnsemblPlantsGene:TraesCS5D01G551100	Gene3D:1.10.246.20	GO:GO:0003674	GO:GO:0003712	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:KIX_dom_sf
InterPro:MED15_KIX	PANTHER:PTHR33137	PANTHER:PTHR33137:SF4	PFAM:PF16987	SEG:seg	SUPFAM:SSF47040
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:557179702..557184100

Molecular Weight (calculated)

49056.6 Da

IEP (calculated)

7.471

GRAVY (calculated)

-0.755

Length

429 amino acids

Sequence
(BLAST)

001: MDANWRPTQG SDPAALGDWR AQLQPEARSR VVNKILETLR KVLPVSVPDE LNELQEVARQ FEDKIYTEAT NQSDYVRKIS LKMVSMETNR QQAHGNAQVI
101: PNQNNSAPAL PPQGRNQAQT TKRQSSQQPM MQMLSGLHPG QSTIPQTQPM AMQSATQSGT QQNQLNFVQQ SVQSLLHQPQ QTVGRQQQQA HPSIHQQPSL
201: HSQQPNIPLQ QQQQQLMGHQ PNLQQDQLIG QHNGAVEMQE QQRLPVQSNI LLNVQQTQQM LNQPYMLLHQ THQLGSQANM ASLQHQQLLG TVPYMLLQQN
301: NMDPIQAQRG LQEVSSSSHE DADADYWQEE IYQMVKMLKD QYFADLSELF NKICVKLQHV ESIIPPPIPS EQYDRMKSFK TLLERILQML QISKSIIQPA
401: MRDRVPQYEK QIITILNCLR KAVQPQVQQ

Best Arabidopsis Sequence Match ( AT1G15780.2 )
(BLAST)

0001: MDNNNWRPSL PNGEPAMDTG DWRTQLPPDS RQKIVNKIME TLKKHLPFSG PEGINELRRI AARFEEKIFS GALNQTDYLR KISMKMLTME TKSQNAAGSS
0101: AAIPAANNGT SIDSIPTNQG QLLPGSLSTN QSQAPQPLLS QTMQNNTASG MTGSTALPSS MPPVSSITNN NTTSVVNQNA NMQNVAGMLQ DSSGQHGLSS
0201: NMFSGPQRQM LGRPHAMSSQ QQQQPYLYQQ QLQQQLLKQN FQSGNVPNPN SLLPSHIQQQ QQNVLQPNQL HSSQQPGVPT SATQPSTVNS APLQGLHTNQ
0301: QSSPQLSSQQ TTQSMLRQHQ SSMLRQHPQS QQASGIHQQQ SSLPQQSISP LQQQPTQLMR QQAANSSGIQ QKQMMGQHVV GDMQQQHQQR LLNQQNNVMN
0401: IQQQQSQQQP LQQPQQQQKQ QPPAQQQLMS QQNSLQATHQ NPLGTQSNVA GLQQPQQQML NSQVGNSSLQ NNQHSVHMLS QPTVGLQRTH QAGHGLYSSQ
0501: GQQSQNQPSQ QQMMPQLQSH HQQLGLQQQP NLLQQDVQQR LQASGQVTGS LLPPQNVVDQ QRQLYQSQRT LPEMPSSSLD STAQTESANG GDWQEEVYQK
0601: IKSMKETYLP DLNEIYQRVA AKLQQDSMPQ QQRSDQLEKL RQFKTMLERM IQFLSVSKSN IMPALKDKVA YYEKQIIGFL NMHRPRKPVQ QGQLPQSQMQ
0701: PMQQPQSQTV QDQSHDNQTN PQMQSMSMQG AGPRAQQSSM TNMQSNVLSS RPGVSAPQQN IPSSIPASSL ESGQGNTLNN GQQVAMGSMQ QNTSQLVNNS
0801: SASAQSGLST LQSNVNQPQL SSSLLQHQHL KQQQDQQMQL KQQFQQRQMQ QQQLQARQQQ QQQQLQARQQ AAQLQQMNDM NDLTSRQGMN VSRGMFQQHS
0901: MQGQRANYPL QQLKPGAVSS PQLLQGASPQ MSQHLSPQVD QKNTVNKMGT PLQPANSPFV VPSPSSTPLA PSPMQVDSEK PGSSSLSMGN IARQQATGMQ
1001: GVVQSLAIGT PGISASPLLQ EFTSPDGNIL NSSTITSGKP SATELPIERL IRAVKSISPQ ALSSAVSDIG SVVSMVDRIA GSAPGNGSRA SVGEDLVAMT
1101: KCRLQARNFM TQEGMMATKK MKRHTTAMPL SVASLGGSVG DNYKQFAGSE TSDLESTATS DGKKARTETE HALLEEIKEI NQRLIDTVVE ISDDEDAADP
1201: SEVAISSIGC EGTTVRFSFI AVSLSPALKA HLSSTQMSPI QPLRLLVPCS YPNGSPSLLD KLPVETRYKQ ILQSQVNRTI DFPYRVEQTS TIQLKSSQES
1301: STRNPLLETA LSSYRNTVWF LEQQRKRGPV VQSYGKVQHI AKKFVTADVA QRHSQDMGRL CSGSDL

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Oth /.../aryotes - 38082 (source: NCBI BLink). [Source:TAIR;Acc:AT1G15780]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.