CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19981	Canola	cytosol	18.95	93.14
CDY19980	Canola	nucleus	55.12	79.93
CDY00086	Canola	nucleus	35.58	70.83
CDY19982	Canola	nucleus	48.95	68.12
CDX85281	Canola	nucleus	54.42	50.76
CDX86356	Canola	nucleus	52.21	47.56
CDY35787	Canola	nucleus	49.07	47.42
CDY66823	Canola	cytosol, nucleus	48.26	46.21
AT2G10440.1	Thale cress	nucleus	41.98	38.61
TraesCS1B01G359700.1	Wheat	cytosol, mitochondrion, nucleus	3.95	27.2
TraesCS1A01G346100.1	Wheat	nucleus	3.84	27.05
TraesCS1D01G348800.1	Wheat	nucleus	3.84	26.83
CDY53315	Canola	nucleus	6.28	24.11
CDY35039	Canola	cytosol	3.84	23.91
CDY33379	Canola	cytosol	2.21	23.17
CDX81732	Canola	nucleus	6.4	22.63
HORVU5Hr1G125120.1	Barley	cytosol	6.4	22.0
GSMUA_Achr8P09800_001	Banana	nucleus	3.49	21.43
CDY36587	Canola	nucleus	29.07	20.96
Os08t0523600-01	Rice	cytosol, nucleus	2.33	20.83
CDX81731	Canola	plastid	20.35	20.78
CDX83970	Canola	mitochondrion	28.49	20.52
CDY53314	Canola	mitochondrion, nucleus	20.23	20.45
TraesCS7D01G546200.1	Wheat	nucleus	8.49	20.22
CDY61379	Canola	nucleus	30.58	20.22
CDY33382	Canola	nucleus	8.37	20.11
TraesCS7B01G495400.1	Wheat	cytosol	9.42	20.05
TraesCS1B01G433100.1	Wheat	nucleus	13.84	19.57
TraesCS1D01G411400.1	Wheat	nucleus	13.72	19.41
TraesCS1A01G403500.2	Wheat	nucleus	13.6	19.37
KXG25352	Sorghum	nucleus	3.49	19.23
CDY52868	Canola	cytosol	3.14	19.15
HORVU7Hr1G118370.1	Barley	nucleus	26.86	18.89
OQU80675	Sorghum	nucleus	9.3	18.82
TraesCS7B01G177500.1	Wheat	nucleus	28.6	18.71
TraesCS7D01G526100.1	Wheat	nucleus	28.26	18.68
TraesCS7B01G493100.1	Wheat	nucleus	8.02	18.6
TraesCS7D01G281700.2	Wheat	nucleus	28.37	18.58
TraesCS7A01G283500.3	Wheat	nucleus	28.14	18.52
TraesCS7A01G540000.1	Wheat	nucleus	28.02	18.51
HORVU7Hr1G060970.1	Barley	nucleus	28.14	18.43
EES14038	Sorghum	nucleus	28.14	18.42
TraesCS7B01G460900.1	Wheat	nucleus	27.79	18.34
TraesCS2B01G599400.1	Wheat	cytosol	4.77	18.22
Zm00001d031863_P013	Maize	nucleus	27.67	18.2
TraesCS5D01G551100.1	Wheat	nucleus	9.07	18.18
Zm00001d049894_P011	Maize	nucleus	27.56	18.12
TraesCS2D01G594100.1	Wheat	cytosol	4.88	18.1
HORVU2Hr1G123080.2	Barley	cytosol	4.77	17.75
TraesCS2B01G598700.1	Wheat	cytosol	4.77	17.67
Os08t0564800-01	Rice	extracellular	27.09	17.65
TraesCSU01G036900.1	Wheat	cytosol	4.65	17.62
VIT_08s0040g00740.t01	Wine grape	nucleus	8.14	17.2
TraesCS4A01G315600.1	Wheat	nucleus	9.19	16.36
HORVU5Hr1G106220.2	Barley	cytosol, nucleus	10.0	15.47
CDY36595	Canola	cytosol	5.0	12.61
CDY33381	Canola	cytosol, extracellular	4.53	12.07
CDY36590	Canola	cytosol	3.95	11.6
CDY36589	Canola	nucleus	15.0	10.76
CDY61380	Canola	extracellular, vacuole	5.12	10.73
CDY33380	Canola	cytosol	4.53	8.61
CDY36591	Canola	cytosol	4.53	7.49

Protein Annotations

EnsemblPlants:CDY00085	EnsemblPlantsGene:GSBRNA2T00109583001	Gene3D:1.10.246.20	GO:A0A078EDC1	InterPro:MED15_KIX	PANTHER:PTHR33137
PFAM:PF16987	ProteinID:CDY00085	ProteinID:CDY00085.1	SEG:seg	UniParc:UPI0004EE01ED	MapMan:15.3.3.3.5

Description

BnaC09g02160D

Coordinates

chrLK031916:+:733966..737621

Molecular Weight (calculated)

96736.5 Da

IEP (calculated)

10.083

GRAVY (calculated)

-0.718

Length

860 amino acids

Sequence
(BLAST)

001: MEGTSSWKPN EQGGDSLAND WRSQHEPDLR KKVIVAIVER LKICLSRQIT DSINKTACTF EEKIYGIAKD KGDYLRKIHE KILAFERRIR TGTSANGANT
101: PDPAQALNQG QSLPTSLTYA QTPTSQQWLS PSSIQSKLNI PESSGLPTQA PMTVSAAQNL NVQMGERVES SLGPGPQRQI QGRQQLLQKP QQQQLRSNTM
201: YQHHGNQQQQ SLLPHHRSSS LIKQSFPQSS ALSSHQQKMA VPSQEHKQLE RKHHISQMMN GKDTQLIHLT SPQNNGEKQR TSQQNNMASF NVHGSSLFQE
301: AGSLHQSQNL ADQQKQPYQL QKPSMFPFLP TWMIMFFFFS FQDSTSKTLN PSGGDWRDET YQKIKAFREK YIHILSELFQ KLSYKLQEID SLPQQNMMPS
401: EPRVENLRAA RAKLGQVLVF LNVSRSSVSE HHRDKFSAYG SLALKFTKHQ REKEQQQVHL PPSQINQTSL QSQSGQVHAS QTATPNTSQT RPRIEPKDVN
501: KVMSSSGNVV VHSPKQNPPS NQREAVHSNI SQDQSSMFQK KQFHHLPRQE QLLERQKQQQ PSASSPQMQK NYSSPQLVEQ QTLPTPINKT PAQEHPLVTL
601: SSEPISERPI DRLIKAIQSS SPESLAQSVS EMSSVISLTD RLAGSVHTIG GSRARLGGDL SERTRFRVQQ GGRHPTKRFK RSLTAMPSQT DSYKRLSVNK
701: IEPSCALVQE IMEINGRFVE TVVNICNEDV CPSEVTSGLT VVTCSYVPVA LSATFKALYN SGHISQIQPL RLLVPDNYPC SPIIIEKILF DGVSDHKFED
801: LSARARSRFS LSIKEAMSLK EIAKVWDECA RATMLEYAER HGGGTFSSKY GRWESVLRSS

Best Arabidopsis Sequence Match ( AT2G10440.1 )
(BLAST)

001: MEGNTNWKPN EQGGNRDAAN NRIDWRSQHE PELRQKVLSK IVEKFKEKFH AHEEYKINDI ASKFEENFYS IATDKTTTSQ QWLQQNTQSN LCVICFAKSG
101: PYNRSRFSKT DTCSVTAAAT SSAKFVETTY STAFSSIKLT KHSITDQKSV FDTTEQKRQE QEQLINQLTN LPTSRPNNRD QQGAFQVSSS QQNNNVTLHA
201: MSQQKNNLQS MTRGQQVGQS QPMMSQQYRQ QYPMQQDPQN RNLQKHLDFV QNNTNQFQAA SSLRQTQNIT DQQNQPQQLE RANPSILIMN IIVASQDSTG
301: KTVNVNAGNW QEETYQKIKK LKEMCLPVLS LMHQRVAEKL RETESLPPQP MQAQWIEKLK AGKLSMEHLM FFLNVHRSSV SEKHRDKFSQ YEYHILKFTK
401: SQTMVLRPTQ QQQGQFPPSQ TAMQTQSPQV HVSQSLYKEQ RRSRLMPSSQ NEASSLLQIR PKLDPRDENI IMASSGNVML PSVKQNPRAV NTNISSVQSL
501: QKQKRFHHRQ MQQQQPQQGN HQHQMQTNEM NDVRMRERVN IKARLLEQQV SSSQRQVPKQ ESNVSSSQIQ NHSSPQLVDQ HILPATINKT GTPLNSSGSA
601: FVAPAPSPVP GDSEMPISVE SPVSGVDEIN STLDSSSKLG TQETPLLFVP PPEPITERPI DRLIKAFQAA SPKSLAESVS EISSVISMVD MIGGSFPSSG
701: GSRAGLGEDL SERTRNFTTH EETNLSKRMK RSINIVPPDM SSQIDSYEQL SSLESEVVST TSSGLKVNNI APGYALLQEI KETNGRLVET VVEICDEDSL
801: GTIVTCTYAP VALSATFKDH YKSGKIIFYV SKCLMQAQIQ PLRLLFPMDY PYSSPIVLEE ISFDTSVHKY EDLSARTRSR FSLSMKEFSE PGFSKGIAQT
901: WNDCARATMV EYAERHGGGT FSSKYGAWET VLRAS

Arabidopsis Description

MED15CProbable mediator of RNA polymerase II transcription subunit 15c [Source:UniProtKB/Swiss-Prot;Acc:Q9SHV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.