Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19981 | Canola | cytosol | 33.33 | 82.29 |
| CDY19982 | Canola | nucleus | 87.04 | 60.84 |
| CDY00085 | Canola | nucleus | 70.83 | 35.58 |
| CDX85281 | Canola | nucleus | 63.43 | 29.72 |
| CDX86356 | Canola | nucleus | 64.12 | 29.34 |
| CDY35787 | Canola | nucleus | 49.54 | 24.04 |
| CDY66823 | Canola | cytosol, nucleus | 47.22 | 22.72 |
| CDY19980 | Canola | nucleus | 31.02 | 22.6 |
| CDX81731 | Canola | plastid | 36.81 | 18.88 |
| CDY53314 | Canola | mitochondrion, nucleus | 36.57 | 18.57 |
| CDY33382 | Canola | nucleus | 14.12 | 17.04 |
| CDX83970 | Canola | mitochondrion | 37.96 | 13.74 |
| CDY36587 | Canola | nucleus | 37.04 | 13.41 |
| CDY61379 | Canola | nucleus | 37.5 | 12.45 |
| CDY61380 | Canola | extracellular, vacuole | 11.34 | 11.95 |
| CDY36590 | Canola | cytosol | 3.7 | 5.46 |
| CDY36589 | Canola | nucleus | 12.73 | 4.59 |
| CDY33381 | Canola | cytosol, extracellular | 3.01 | 4.02 |
| CDY35039 | Canola | cytosol | 1.16 | 3.62 |
| CDY36595 | Canola | cytosol | 1.85 | 2.35 |
| CDY33380 | Canola | cytosol | 1.85 | 1.77 |
| CDY36591 | Canola | cytosol | 1.85 | 1.54 |
| CDY53315 | Canola | nucleus | 0.69 | 1.34 |
| CDX81732 | Canola | nucleus | 0.69 | 1.23 |
| CDY52868 | Canola | cytosol | 0.0 | 0.0 |
| CDY33379 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY00086 | EnsemblPlantsGene:GSBRNA2T00109584001 | PANTHER:PTHR33137 | PANTHER:PTHR33137:SF4 | ProteinID:CDY00086 | ProteinID:CDY00086.1 |
| SEG:seg | UniParc:UPI0004EEB645 | MapMan:15.3.3.3.5 | : | : | : |
Description
BnaC09g02150D
Coordinates
chrLK031916:+:740621..742340
Molecular Weight (calculated)
48445.8 Da
IEP (calculated)
7.708
GRAVY (calculated)
-0.396
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MASFNVHGPS LLGIQGQEVD QSQPLMLQRL NDTHPSSTSG GDDWPEETYQ KIKALKEKYG LVLSTFYKSI SDKLREIDSL PQHNMPVEWL KASKATLEGV
101: LAFLNVCKSS VSEFHRDKLS LYEAKLLRFI EYHHLNVTRR AMKRQQQVHL PPSHTHQTRP RMEPEDENNT MSTAAQEHLP PEPITERPID RLIKALQSAS
201: PESLAQSVSE MSSVISLSDM IAGLVHTIGG SIARLGEDLS ERTRFRVQQG DTHPTKRFKR SVTAISSSKV NKIEPSYALL QEIIEINERL VETVVSICNE
301: DVCPSKVTSG TVVVTCAYVP VALSATFKAL YNSGHISQIQ PLRLLVRENY PYSPTILEKV IFDTASVHKY EDLSARARSR FSLSMKEAMS LKEIAKVWDE
401: CGRATMLEYA EGHGGGTYSS KYGRWESVLR AS
101: LAFLNVCKSS VSEFHRDKLS LYEAKLLRFI EYHHLNVTRR AMKRQQQVHL PPSHTHQTRP RMEPEDENNT MSTAAQEHLP PEPITERPID RLIKALQSAS
201: PESLAQSVSE MSSVISLSDM IAGLVHTIGG SIARLGEDLS ERTRFRVQQG DTHPTKRFKR SVTAISSSKV NKIEPSYALL QEIIEINERL VETVVSICNE
301: DVCPSKVTSG TVVVTCAYVP VALSATFKAL YNSGHISQIQ PLRLLVRENY PYSPTILEKV IFDTASVHKY EDLSARARSR FSLSMKEAMS LKEIAKVWDE
401: CGRATMLEYA EGHGGGTYSS KYGRWESVLR AS
001: MEGNTNWKPN EQGGNRDAAN NRIDWRSQHE PELRQKVLSK IVCSLNDYRK VEKFKEKFHA HEEYKINDIA SKFEENFYSI ATDKNDYLRK LSETLHYIQR
101: TYTRVLASQV VVNQAQSLPA LLPYMQTTTS QQWLQQNTQS NLCVICFAKS GPYNRSRFSK TDTCSVTAAA TSSAKFVETT YSTAFSSIKL TKHSITDQKS
201: VFDTTVLIMN IIVASQDSTG KTVNVNAGNW QEETYQKIKK LKEMCLPVLS LMHQRVAEKL RETESLPPQP MQAQWIEKLK AGKLSMEHLM FFLNVHRSSV
301: SEKHRDKFSQ YEYHILKFTK SQTMVLRPTQ QQQGQFPPSQ TAMQTQSPQV HVSQSLYKEQ RRSRLMPSSQ NEASSLLQIR PKLDPRDENI IMASSGNVML
401: PSVKQNPRAV NTNISSVQSL QKQKRFHHRQ MQQQQPQQGN HQHQMQTNEM NDVRMRERVN IKARLLEQQV SSSQRQVPKQ ESNVSSSQIQ NHSSPQLVDQ
501: HILPATINKT GTPLNSSGSA FVAPAPSPVP GDSEMPISVE SPVSGVDEIN STLDSSSKLG TQETPLLFVP PPEPITERPI DRLIKAFQAA SPKSLAESVS
601: EISSVISMVD MIGGSFPSSG GSRAGLGEDL SERTRNFTTH EETNLSKRMK RSINIVPPDM SSQIDSYEQL SSLESEVVST TSSGLKVNNI APGYALLQEI
701: KETNGRLVET VVEICDEDSL GTIVTCTYAP VALSATFKDH YKSGKIAQIQ PLRLLFPMDY PYSSPIVLEE ISFDTSVHKY EDLSARTRSR FSLSMKEFSE
801: PGFSKGIAQT WNDCARATMV EYAERHGGGT FSSKYGAWET VLRAS
101: TYTRVLASQV VVNQAQSLPA LLPYMQTTTS QQWLQQNTQS NLCVICFAKS GPYNRSRFSK TDTCSVTAAA TSSAKFVETT YSTAFSSIKL TKHSITDQKS
201: VFDTTVLIMN IIVASQDSTG KTVNVNAGNW QEETYQKIKK LKEMCLPVLS LMHQRVAEKL RETESLPPQP MQAQWIEKLK AGKLSMEHLM FFLNVHRSSV
301: SEKHRDKFSQ YEYHILKFTK SQTMVLRPTQ QQQGQFPPSQ TAMQTQSPQV HVSQSLYKEQ RRSRLMPSSQ NEASSLLQIR PKLDPRDENI IMASSGNVML
401: PSVKQNPRAV NTNISSVQSL QKQKRFHHRQ MQQQQPQQGN HQHQMQTNEM NDVRMRERVN IKARLLEQQV SSSQRQVPKQ ESNVSSSQIQ NHSSPQLVDQ
501: HILPATINKT GTPLNSSGSA FVAPAPSPVP GDSEMPISVE SPVSGVDEIN STLDSSSKLG TQETPLLFVP PPEPITERPI DRLIKAFQAA SPKSLAESVS
601: EISSVISMVD MIGGSFPSSG GSRAGLGEDL SERTRNFTTH EETNLSKRMK RSINIVPPDM SSQIDSYEQL SSLESEVVST TSSGLKVNNI APGYALLQEI
701: KETNGRLVET VVEICDEDSL GTIVTCTYAP VALSATFKDH YKSGKIAQIQ PLRLLFPMDY PYSSPIVLEE ISFDTSVHKY EDLSARTRSR FSLSMKEFSE
801: PGFSKGIAQT WNDCARATMV EYAERHGGGT FSSKYGAWET VLRAS
Arabidopsis Description
MED15CProbable mediator of RNA polymerase II transcription subunit 15c [Source:UniProtKB/Swiss-Prot;Acc:Q9SHV7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.