CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028029.1-P	Field mustard	cytosol	36.85	89.3
CDY33380	Canola	cytosol	66.79	76.82
AT1G15790.3	Thale cress	cytosol	20.73	57.14
CDY33379	Canola	cytosol	6.91	43.9
GSMUA_Achr8P09810_001	Banana	nucleus	9.79	43.22
CDY33381	Canola	cytosol, extracellular	25.53	41.18
CDY52868	Canola	cytosol	10.56	39.01
CDY36590	Canola	cytosol	21.69	38.57
CDY35039	Canola	cytosol	8.83	33.33
CDY36595	Canola	cytosol	21.69	33.14
CDY53315	Canola	nucleus	13.24	30.8
CDX81732	Canola	nucleus	13.24	28.4
CDY61380	Canola	extracellular, vacuole	15.74	20.0
CDY33382	Canola	nucleus	13.44	19.55
CDY36589	Canola	nucleus	34.74	15.1
CDX83970	Canola	mitochondrion	18.62	8.12
CDY36587	Canola	nucleus	17.08	7.46
CDY61379	Canola	nucleus	17.85	7.15
CDY19982	Canola	nucleus	6.53	5.5
CDY00085	Canola	nucleus	7.49	4.53
CDY19980	Canola	nucleus	4.8	4.22
CDX86356	Canola	nucleus	7.49	4.13
CDX85281	Canola	nucleus	7.29	4.12
CDY66823	Canola	cytosol, nucleus	7.1	4.12
CDY35787	Canola	nucleus	6.91	4.04
CDX81731	Canola	plastid	3.07	1.9
CDY53314	Canola	mitochondrion, nucleus	3.07	1.88
CDY00086	Canola	nucleus	1.54	1.85
CDY19981	Canola	cytosol	0.38	1.14

Protein Annotations

Gene3D:1.10.246.20	MapMan:35.1	GO:A0A078HFR8	UniProt:A0A078HFR8	EnsemblPlants:CDY36591	ProteinID:CDY36591
ProteinID:CDY36591.1	GO:GO:0003674	GO:GO:0003712	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00062288001	InterPro:KIX_dom_sf	InterPro:MED15_KIX
PFAM:PF16987	PANTHER:PTHR33137	PANTHER:PTHR33137:SF4	SUPFAM:SSF47040	UniParc:UPI0004EF39C2	SEG:seg

Description

BnaA06g10440DBnaA06g10440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFR8]

Coordinates

chrLK032378:-:350665..355640

Molecular Weight (calculated)

58501.0 Da

IEP (calculated)

7.145

GRAVY (calculated)

-0.470

Length

521 amino acids

Sequence
(BLAST)

001: MGTCVDKGET AMDTHDWRAQ LPSGGRQKVV NKIMEALHKY LRVSGPEEMN ELRKIASRFE EKIFSDAVNL TDYLRKISIK MLPLDTKAPN AAGSSLPIPG
101: GYNRLPLNPG CHQMTVEGPV EAEPVVNTGD WRTCLPPDSR KKNANKIKGT LKEHVPNCGK EGDIELKKIA ASFEELIFNT AIDQFLVLVL VSARRNSESP
201: KALAANLSFF LFLVNYSYMI NLPYSGPEGI NELKRIAVRF EEKVFSSSVH QNDYLRKISM KMLTMETKSQ NVAGSASSIP ADSSNLAFDE LTANCYHPSL
301: LSRRSPPQSH DHNGNVEPFL LNEEPAINSV DWRTQLPPGS RQNIVNKIMD TLKKHFPYSG PEGINELKRI AARFEEKIFS SAVHQTDYLR KISMKILTME
401: TKAQNAAGSD SSILADSNNL TLDDIMNHLI KDNAEPSLLN VEPAINSGDW RIQLPPDSRQ KNIDKLLETL KKHVPYSGQE GIEELRRIAI SFEELIFNTA
501: LNQVDYFRKI SLKMQTMEKD D

Best Arabidopsis Sequence Match ( AT1G15790.4 )
(BLAST)

001: MDTTGDWRTQ FPSASRSRIV NKIMETQLKQ LPFIRPEGTN ELRKIAVRFE EKLFNNASNQ TEYLRQICMK MLNMETKSQN AAGSSSADDN TPPLVPEPSV
101: PNNEPAVNTG DWRTQQPQDS RQKNINALLD TLKKIVPHSG KEGIDELMRI AVSLEELIFN SAINQEDYLG KISLKMRTM

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (sour /.../BI BLink). [Source:TAIR;Acc:AT1G15790]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.