CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040585.1-P	Field mustard	nucleus	100.0	99.89
CDY35787	Canola	nucleus	90.87	91.69
CDY19981	Canola	cytosol	13.14	67.43
CDX85281	Canola	nucleus	54.57	53.15
CDY19982	Canola	nucleus	35.75	51.94
CDX86356	Canola	nucleus	51.56	49.05
CDY00085	Canola	nucleus	46.21	48.26
CDY00086	Canola	nucleus	22.72	47.22
CDY19980	Canola	nucleus	30.4	46.04
AT2G10440.1	Thale cress	nucleus	40.31	38.72
TraesCS1A01G346100.1	Wheat	nucleus	3.56	26.23
TraesCS1D01G348800.1	Wheat	nucleus	3.56	26.02
TraesCS1B01G359700.1	Wheat	cytosol, mitochondrion, nucleus	3.56	25.6
TraesCS5D01G551100.1	Wheat	nucleus	11.69	24.48
CDY33379	Canola	cytosol	2.23	24.39
HORVU5Hr1G125120.1	Barley	cytosol	6.68	24.0
TraesCS7D01G546200.1	Wheat	nucleus	9.58	23.82
TraesCS7B01G495400.1	Wheat	cytosol	10.58	23.51
TraesCS4A01G315600.1	Wheat	nucleus	12.47	23.19
CDX81731	Canola	plastid	21.71	23.16
TraesCS1B01G433100.1	Wheat	nucleus	15.59	23.03
CDY53314	Canola	mitochondrion, nucleus	21.71	22.91
TraesCS1D01G411400.1	Wheat	nucleus	15.48	22.86
TraesCS7B01G493100.1	Wheat	nucleus	9.24	22.37
TraesCS1A01G403500.2	Wheat	nucleus	15.03	22.35
CDY33382	Canola	nucleus	8.8	22.07
HORVU2Hr1G123080.2	Barley	cytosol	5.57	21.64
CDX83970	Canola	mitochondrion	28.51	21.44
CDY36587	Canola	nucleus	28.4	21.37
TraesCS2D01G594100.1	Wheat	cytosol	5.46	21.12
CDY61379	Canola	nucleus	30.4	20.98
CDY53315	Canola	nucleus	5.23	20.98
Os08t0523600-01	Rice	cytosol, nucleus	2.23	20.83
TraesCSU01G036900.1	Wheat	cytosol	5.23	20.7
TraesCS2B01G598700.1	Wheat	cytosol	5.35	20.69
TraesCS7D01G526100.1	Wheat	nucleus	29.73	20.52
TraesCS2B01G599400.1	Wheat	cytosol	5.12	20.44
TraesCS7A01G540000.1	Wheat	nucleus	29.62	20.43
TraesCS7B01G460900.1	Wheat	nucleus	29.29	20.18
TraesCS7B01G177500.1	Wheat	nucleus	29.51	20.15
Os08t0564800-01	Rice	extracellular	29.51	20.08
TraesCS7A01G283500.3	Wheat	nucleus	29.18	20.05
TraesCS7D01G281700.2	Wheat	nucleus	29.29	20.03
HORVU7Hr1G060970.1	Barley	nucleus	29.29	20.03
OQU80675	Sorghum	nucleus	9.47	20.0
GSMUA_Achr8P09800_001	Banana	nucleus	3.12	20.0
EES14038	Sorghum	nucleus	29.06	19.86
HORVU5Hr1G106220.2	Barley	cytosol, nucleus	12.25	19.78
HORVU7Hr1G118370.1	Barley	nucleus	26.84	19.71
Zm00001d031863_P013	Maize	nucleus	28.29	19.42
Zm00001d049894_P011	Maize	nucleus	28.06	19.27
CDY52868	Canola	cytosol	3.01	19.15
CDX81732	Canola	nucleus	5.12	18.93
VIT_08s0040g00740.t01	Wine grape	nucleus	8.57	18.92
KXG25352	Sorghum	nucleus	3.12	17.95
CDY35039	Canola	cytosol	2.67	17.39
CDY61380	Canola	extracellular, vacuole	7.46	16.34
CDY36589	Canola	nucleus	17.82	13.34
CDY36590	Canola	cytosol	4.01	12.29
CDY36595	Canola	cytosol	4.45	11.73
CDY33381	Canola	cytosol, extracellular	4.12	11.46
CDY33380	Canola	cytosol	4.12	8.17
CDY36591	Canola	cytosol	4.12	7.1

Protein Annotations

EnsemblPlants:CDY66823	EnsemblPlantsGene:GSBRNA2T00056644001	Gene3D:1.10.246.20	GO:A0A078JGW8	InterPro:MED15_KIX	ncoils:Coil
PANTHER:PTHR33137	PANTHER:PTHR33137:SF4	PFAM:PF16987	ProteinID:CDY66823	ProteinID:CDY66823.1	SEG:seg
UniParc:UPI0004EE4291	UniProt:A0A078JGW8	MapMan:15.3.3.3.5	:	:	:

Description

BnaAnng23030DBnaAnng23030D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JGW8]

Coordinates

chrLK035496:+:4351..8186

Molecular Weight (calculated)

102077.0 Da

IEP (calculated)

6.627

GRAVY (calculated)

-0.807

Length

898 amino acids

Sequence
(BLAST)

001: LSDISDHHSC RWLDLMEGYS NWKPNEQGRD SLANNANDWR STHEFDLRKR VIIAIVEKLK ICFPKHSQND INNTACKFEG KIYGMATDKS DYLRKISEKI
101: MVFDQRFKSV QSGSLVNEPN TTQDPAAQAL NQGPSLPTSL SYTQTPTSQQ WFPQNNIHQS SGFSNQVPIT VSAAQSQNIQ MGEGVHSHLL SNSQRQIQGR
201: KQFCTQPQQQ LQSCNDMFQS QVNQQLLKEN THHLQPPYMQ QHQHQQSLLK QPIHQHLPHH TSLSTIQQSF PQTSVHSSLT SSGQQNSQYL PRHMYVQSQE
301: QKQQEYEQLI SQLMNGQDTQ QNHLTSQQNN WEQRGAFTVS PSQQNNIVSF QEMGQQSSNP HTMYLQQHLY SHSNNASSSL ASQQQTYMPG GQSGNFNVYE
401: SSLLGTQGQG LGQSQPMMLQ QYQQPQNRIL QQHLDDTQRL HEAVSLHQTQ NVANQQNQPY QLQRAPTENP YINASGGDWQ EETYQKIKAL KEKYLPVLST
501: LLQKVSEKLG EVDSLPQQNT QNEPIEKLRV GKSMLELVVM FLNVHRDNIS ESHRDKFSLY EEQVLRFTKN RQTLTQRPMQ HQQSPSGHNQ HSNISLPQSC
601: MFHEKQFHHL NQLLHSQQQQ QPQTNQQQPQ IQNYSSPQFV DHQILSTAFH NTGTSSQSLA PSPNLVDLEK PIYVESLVSH DYQLQTAPQE QPIDRLIEAV
701: HSVTTTPPLD IISQTGSYKR LSSLESEADS TASSGSKAQK IEPACTLLQE IKDINGSLVE TVVNICNEEV YPSEVTPGTI VTCSYSPVAL SDTFEAHYKS
801: GHISQIQPLR LLVPVNYPSS PILLLEKLSY DSSLHKYDDL SARTRSRFGL SMKEFSEPMS LKEIAQAWDV CARETMAEYA EQHGGCTFSS NYGHWDPV

Best Arabidopsis Sequence Match ( AT2G10440.1 )
(BLAST)

001: MEGNTNWKPN EQGGNRDAAN NRIDWRSQHE PELRQKVLSK IVEKFKEKFH AHEEYKINDI ASKFEENFYS IATDKTTTSQ QWLQQNTQSN LCVICFAKSG
101: PYNRSRFSKT DTCSVTAAAT SSAKFVETTY STAFSSIKLT KHSITDQKSV FDTTEQKRQE QEQLINQLTN LPTSRPNNRD QQGAFQVSSS QQNNNVTLHA
201: MSQQKNNLQS MTRGQQVGQS QPMMSQQYRQ QYPMQQDPQN RNLQKHLDFV QNNTNQFQAA SSLRQTQNIT DQQNQPQQLE RANPSILIMN IIVASQDSTG
301: KTVNVNAGNW QEETYQKIKK LKEMCLPVLS LMHQRVAEKL RETESLPPQP MQAQWIEKLK AGKLSMEHLM FFLNVHRSSV SEKHRDKFSQ YEYHILKFTK
401: SQTMVLRPTQ QQQGQFPPSQ TAMQTQSPQV HVSQSLYKEQ RRSRLMPSSQ NEASSLLQIR PKLDPRDENI IMASSGNVML PSVKQNPRAV NTNISSVQSL
501: QKQKRFHHRQ MQQQQPQQGN HQHQMQTNEM NDVRMRERVN IKARLLEQQV SSSQRQVPKQ ESNVSSSQIQ NHSSPQLVDQ HILPATINKT GTPLNSSGSA
601: FVAPAPSPVP GDSEMPISVE SPVSGVDEIN STLDSSSKLG TQETPLLFVP PPEPITERPI DRLIKAFQAA SPKSLAESVS EISSVISMVD MIGGSFPSSG
701: GSRAGLGEDL SERTRNFTTH EETNLSKRMK RSINIVPPDM SSQIDSYEQL SSLESEVVST TSSGLKVNNI APGYALLQEI KETNGRLVET VVEICDEDSL
801: GTIVTCTYAP VALSATFKDH YKSGKIIFYV SKCLMQAQIQ PLRLLFPMDY PYSSPIVLEE ISFDTSVHKY EDLSARTRSR FSLSMKEFSE PGFSKGIAQT
901: WNDCARATMV EYAERHGGGT FSSKYGAWET VLRAS

Arabidopsis Description

MED15CProbable mediator of RNA polymerase II transcription subunit 15c [Source:UniProtKB/Swiss-Prot;Acc:Q9SHV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.