Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G177500.1 | Wheat | nucleus | 98.25 | 98.1 |
| TraesCS7A01G283500.3 | Wheat | nucleus | 97.64 | 98.09 |
| HORVU7Hr1G060970.1 | Barley | nucleus | 95.13 | 95.13 |
| TraesCS7D01G526100.1 | Wheat | nucleus | 88.12 | 88.93 |
| TraesCS5D01G551100.1 | Wheat | nucleus | 26.43 | 80.89 |
| Os08t0564800-01 | Rice | extracellular | 80.96 | 80.53 |
| TraesCS7D01G546200.1 | Wheat | nucleus | 21.78 | 79.22 |
| TraesCS1D01G411400.1 | Wheat | nucleus | 36.63 | 79.11 |
| EES14038 | Sorghum | nucleus | 79.13 | 79.07 |
| TraesCS1D01G348800.1 | Wheat | nucleus | 7.31 | 78.05 |
| Zm00001d049894_P011 | Maize | nucleus | 76.31 | 76.61 |
| Zm00001d031863_P013 | Maize | nucleus | 75.63 | 75.92 |
| PGSC0003DMT400082469 | Potato | extracellular | 4.95 | 65.66 |
| Os08t0523600-01 | Rice | cytosol, nucleus | 4.57 | 62.5 |
| GSMUA_Achr8P09790_001 | Banana | cytosol | 3.58 | 58.75 |
| TraesCS2D01G594100.1 | Wheat | cytosol | 9.9 | 56.03 |
| GSMUA_Achr11P... | Banana | nucleus | 52.93 | 54.42 |
| GSMUA_Achr8P09780_001 | Banana | nucleus | 55.67 | 54.19 |
| KXG25352 | Sorghum | nucleus | 5.94 | 50.0 |
| OQU80675 | Sorghum | nucleus | 16.07 | 49.65 |
| CDX81731 | Canola | plastid | 30.92 | 48.22 |
| VIT_13s0067g02230.t01 | Wine grape | mitochondrion | 2.97 | 42.86 |
| CDY19981 | Canola | cytosol | 5.64 | 42.29 |
| CDY52868 | Canola | cytosol | 4.27 | 39.72 |
| Bra026748.1-P | Field mustard | cytosol | 4.27 | 39.72 |
| KRH08040 | Soybean | cytosol | 2.97 | 37.86 |
| KRH45070 | Soybean | cytosol | 2.97 | 37.86 |
| AT1G15770.1 | Thale cress | cytosol | 7.92 | 35.49 |
| KRH52764 | Soybean | nucleus | 6.4 | 34.43 |
| CDY33382 | Canola | nucleus | 9.37 | 34.36 |
| Bra036204.1-P | Field mustard | nucleus | 15.54 | 33.01 |
| CDY19982 | Canola | nucleus | 15.46 | 32.85 |
| CDY35787 | Canola | nucleus | 20.79 | 30.67 |
| CDX85281 | Canola | nucleus | 20.79 | 29.61 |
| CDY66823 | Canola | cytosol, nucleus | 20.03 | 29.29 |
| Bra040585.1-P | Field mustard | nucleus | 20.03 | 29.25 |
| Bra025408.1-P | Field mustard | nucleus | 22.92 | 28.56 |
| CDY00085 | Canola | nucleus | 18.58 | 28.37 |
| CDX86356 | Canola | nucleus | 19.8 | 27.54 |
| KRH20610 | Soybean | cytosol | 14.7 | 27.49 |
| AT2G10440.1 | Thale cress | nucleus | 18.81 | 26.42 |
| CDY19980 | Canola | nucleus | 11.27 | 24.96 |
| CDY33381 | Canola | cytosol, extracellular | 6.02 | 24.46 |
| CDY36590 | Canola | cytosol | 5.03 | 22.53 |
| Bra026105.1-P | Field mustard | cytosol | 9.06 | 11.3 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G281700.2 | EnsemblPlantsGene:TraesCS7D01G281700 | Gene3D:1.10.246.20 | GO:GO:0003674 | GO:GO:0003712 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:KIX_dom_sf |
| InterPro:MED15_KIX | PFAM:PF16987 | SEG:seg | SUPFAM:SSF47040 | MapMan:15.3.3.3.5 | : |
Description
No Description!
Coordinates
chr7D:+:279731371..279747472
Molecular Weight (calculated)
144537.0 Da
IEP (calculated)
9.668
GRAVY (calculated)
-0.751
Length
1313 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDANWRPTQG SDPAAAAAGV DPNAPPAAGG DWRAQLQPEA RSRIVNKIME TLKKHLPVSV PEGLNELQKI AVRFEEKIYT AATNQSDYLR KISLKMLSME
0101: TKTQQAPGNA QVIPNQNNSA HGLPQGSNQA QTSVVPLMSQ QQARQPNSST SVQASSLANI GQNLPGVNQT STMQNASVMP QNTMNNGLAQ GTSQDIYAAQ
0201: RQMAGRQQQQ QSQQLIYHQQ QMLMKQKLQQ NSLMQPHIQQ QQSLLQPTQM QSSQQSMMQM SSGLHPGQST VPQTQPMAMQ SATQSGIQQN QLNSVQQSVQ
0301: SLLQQPQQSV GRQQQQAQPS MHQQPSLQSP QPNINLQQQH QQLMGQQPNV QQNQLIGQQN GTMEMQQQQR LPVQSNNLLN VQQTQQMLNQ TSMPLHQPQQ
0401: LGSQSNMSSP QQQQQNQQLQ QLLGTVPNVS NMQRIHMLQT KVQQPQQQQH AQQPPMGLMQ PQSQHNQLQQ SQQHLMSQFQ SQPNQLQQQL GMQQSSMQQR
0501: LQTSGGMLLQ QNNMDQQKQF IQPHRGLQEV SSSTSADSAQ TGHAGAGDWQ EEIYQMIKSL KDQYFAELSE LFNKISVKLQ HVDSIIPPQK PSEQYDRMKS
0601: FKIMLERILQ MLQISKSTIQ PAMRDKVPQY EKQIISILNS QRRKPVQPQI QQHFQPPAGQ APNSSISQQQ QPSQTLQQHD SHTNPQASLS SMSTGLQSSS
0701: AAGIQHVPAP PTKNFSAPTQ QNGANIQHQA DSNLETAQGG NFNSLQHGSV SSALQQGSTV PMQGTMNTQL QTSSSMLSHN SMSTMQPNGN SMQANASSFQ
0801: QLKQQQQDHQ MMQSQQMKRQ MFQQYQQKQQ MLQQQLPVQQ HLQKQQPVQM QIPQLHAGND VNELKVRQGT AMKPGMYQQH LGQRSNYYHQ QLKQSGAFPI
0901: SSPQNNLQAS SPQISHHSPQ VDQHNPLPSQ VKTGTPLHSA NSPFVPSPSP SIAPSPIPVD SAKPHSNISS LTNTGQAGHQ QTSLVPQTQS IAVNTPGISA
1001: SPLLAEFTSV DGSQANMLTQ APTKSSAVER PLDRLLKALR TTQRESLNAA VSDIRSVVSM IDRIAGSAPG NGSRAAVGED LVAMTKCRLQ ARNFITNDGS
1101: GASKKMKRDT SAMPLNVSSA GSVNDSFKQT FSVDTPDLQS TATSQAKWQK IEVTHALLEE IQEINQQLID TELHVCEDDA ESFAGTCEGA EGTVIKCTFT
1201: AVAVSPSLKS IFASAQMSPI MPLRLLVPAS YPKCSPVLLD KSPDEQRNSE DLSMKAKSKF SILLRGLAEP MSLREIARTW DACARKTIAE YAQKTGGGSF
1301: SSSYGCWENC VGA
0101: TKTQQAPGNA QVIPNQNNSA HGLPQGSNQA QTSVVPLMSQ QQARQPNSST SVQASSLANI GQNLPGVNQT STMQNASVMP QNTMNNGLAQ GTSQDIYAAQ
0201: RQMAGRQQQQ QSQQLIYHQQ QMLMKQKLQQ NSLMQPHIQQ QQSLLQPTQM QSSQQSMMQM SSGLHPGQST VPQTQPMAMQ SATQSGIQQN QLNSVQQSVQ
0301: SLLQQPQQSV GRQQQQAQPS MHQQPSLQSP QPNINLQQQH QQLMGQQPNV QQNQLIGQQN GTMEMQQQQR LPVQSNNLLN VQQTQQMLNQ TSMPLHQPQQ
0401: LGSQSNMSSP QQQQQNQQLQ QLLGTVPNVS NMQRIHMLQT KVQQPQQQQH AQQPPMGLMQ PQSQHNQLQQ SQQHLMSQFQ SQPNQLQQQL GMQQSSMQQR
0501: LQTSGGMLLQ QNNMDQQKQF IQPHRGLQEV SSSTSADSAQ TGHAGAGDWQ EEIYQMIKSL KDQYFAELSE LFNKISVKLQ HVDSIIPPQK PSEQYDRMKS
0601: FKIMLERILQ MLQISKSTIQ PAMRDKVPQY EKQIISILNS QRRKPVQPQI QQHFQPPAGQ APNSSISQQQ QPSQTLQQHD SHTNPQASLS SMSTGLQSSS
0701: AAGIQHVPAP PTKNFSAPTQ QNGANIQHQA DSNLETAQGG NFNSLQHGSV SSALQQGSTV PMQGTMNTQL QTSSSMLSHN SMSTMQPNGN SMQANASSFQ
0801: QLKQQQQDHQ MMQSQQMKRQ MFQQYQQKQQ MLQQQLPVQQ HLQKQQPVQM QIPQLHAGND VNELKVRQGT AMKPGMYQQH LGQRSNYYHQ QLKQSGAFPI
0901: SSPQNNLQAS SPQISHHSPQ VDQHNPLPSQ VKTGTPLHSA NSPFVPSPSP SIAPSPIPVD SAKPHSNISS LTNTGQAGHQ QTSLVPQTQS IAVNTPGISA
1001: SPLLAEFTSV DGSQANMLTQ APTKSSAVER PLDRLLKALR TTQRESLNAA VSDIRSVVSM IDRIAGSAPG NGSRAAVGED LVAMTKCRLQ ARNFITNDGS
1101: GASKKMKRDT SAMPLNVSSA GSVNDSFKQT FSVDTPDLQS TATSQAKWQK IEVTHALLEE IQEINQQLID TELHVCEDDA ESFAGTCEGA EGTVIKCTFT
1201: AVAVSPSLKS IFASAQMSPI MPLRLLVPAS YPKCSPVLLD KSPDEQRNSE DLSMKAKSKF SILLRGLAEP MSLREIARTW DACARKTIAE YAQKTGGGSF
1301: SSSYGCWENC VGA
001: MEGNTNWKPN EQGGNRDAAN NRIDWRSQHE PELRQKVLSK IVCSLNDYRK VEKFKEKFHA HEEYKINDIA SKFEENFYSI ATDKNDYLRK LSETLHYIQR
101: TYTRVLASQV VVNQAQSLPA LLPYMQTTTS QQWLQQNTQS NLCVICFAKS GPYNRSRFSK TDTCSVTAAA TSSAKFVETT YSTAFSSIKL TKHSITDQKS
201: VFDTTVLIMN IIVASQDSTG KTVNVNAGNW QEETYQKIKK LKEMCLPVLS LMHQRVAEKL RETESLPPQP MQAQWIEKLK AGKLSMEHLM FFLNVHRSSV
301: SEKHRDKFSQ YEYHILKFTK SQTMVLRPTQ QQQGQFPPSQ TAMQTQSPQV HVSQSLYKEQ RRSRLMPSSQ NEASSLLQIR PKLDPRDENI IMASSGNVML
401: PSVKQNPRAV NTNISSVQSL QKQKRFHHRQ MQQQQPQQGN HQHQMQTNEM NDVRMRERVN IKARLLEQQV SSSQRQVPKQ ESNVSSSQIQ NHSSPQLVDQ
501: HILPATINKT GTPLNSSGSA FVAPAPSPVP GDSEMPISVE SPVSGVDEIN STLDSSSKLG TQETPLLFVP PPEPITERPI DRLIKAFQAA SPKSLAESVS
601: EISSVISMVD MIGGSFPSSG GSRAGLGEDL SERTRNFTTH EETNLSKRMK RSINIVPPDM SSQIDSYEQL SSLESEVVST TSSGLKVNNI APGYALLQEI
701: KETNGRLVET VVEICDEDSL GTIVTCTYAP VALSATFKDH YKSGKIAQIQ PLRLLFPMDY PYSSPIVLEE ISFDTSVHKY EDLSARTRSR FSLSMKEFSE
801: PGFSKGIAQT WNDCARATMV EYAERHGGGT FSSKYGAWET VLRAS
101: TYTRVLASQV VVNQAQSLPA LLPYMQTTTS QQWLQQNTQS NLCVICFAKS GPYNRSRFSK TDTCSVTAAA TSSAKFVETT YSTAFSSIKL TKHSITDQKS
201: VFDTTVLIMN IIVASQDSTG KTVNVNAGNW QEETYQKIKK LKEMCLPVLS LMHQRVAEKL RETESLPPQP MQAQWIEKLK AGKLSMEHLM FFLNVHRSSV
301: SEKHRDKFSQ YEYHILKFTK SQTMVLRPTQ QQQGQFPPSQ TAMQTQSPQV HVSQSLYKEQ RRSRLMPSSQ NEASSLLQIR PKLDPRDENI IMASSGNVML
401: PSVKQNPRAV NTNISSVQSL QKQKRFHHRQ MQQQQPQQGN HQHQMQTNEM NDVRMRERVN IKARLLEQQV SSSQRQVPKQ ESNVSSSQIQ NHSSPQLVDQ
501: HILPATINKT GTPLNSSGSA FVAPAPSPVP GDSEMPISVE SPVSGVDEIN STLDSSSKLG TQETPLLFVP PPEPITERPI DRLIKAFQAA SPKSLAESVS
601: EISSVISMVD MIGGSFPSSG GSRAGLGEDL SERTRNFTTH EETNLSKRMK RSINIVPPDM SSQIDSYEQL SSLESEVVST TSSGLKVNNI APGYALLQEI
701: KETNGRLVET VVEICDEDSL GTIVTCTYAP VALSATFKDH YKSGKIAQIQ PLRLLFPMDY PYSSPIVLEE ISFDTSVHKY EDLSARTRSR FSLSMKEFSE
801: PGFSKGIAQT WNDCARATMV EYAERHGGGT FSSKYGAWET VLRAS
Arabidopsis Description
MED15CProbable mediator of RNA polymerase II transcription subunit 15c [Source:UniProtKB/Swiss-Prot;Acc:Q9SHV7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.