Factsheet for VIT_08s0040g00740.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g02270.t01	Wine grape	cytosol	9.09	38.95
VIT_13s0067g02320.t01	Wine grape	cytosol	9.34	31.67
VIT_00s0273g00040.t01	Wine grape	nucleus	6.39	27.96
VIT_13s0067g02230.t01	Wine grape	mitochondrion	6.14	27.47
VIT_15s0045g00200.t01	Wine grape	nucleus	5.9	26.09
Bra026748.1-P	Field mustard	cytosol	8.6	24.82
CDY52868	Canola	cytosol	8.6	24.82
VIT_00s0239g00150.t01	Wine grape	cytosol	5.9	23.76
VIT_00s0239g00070.t01	Wine grape	cytosol	6.63	23.68
VIT_19s0140g00050.t01	Wine grape	nucleus	5.16	23.08
VIT_13s0067g02180.t01	Wine grape	mitochondrion, nucleus	8.11	22.92
VIT_09s0070g00940.t01	Wine grape	nucleus	5.9	22.64
VIT_00s0239g00010.t01	Wine grape	cytosol	5.9	21.24
VIT_13s0067g02040.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome, plastid	7.62	20.26
VIT_09s0070g00870.t01	Wine grape	extracellular	5.65	20.18
GSMUA_Achr8P09800_001	Banana	nucleus	6.88	20.0
VIT_00s0198g00120.t01	Wine grape	nucleus	4.91	19.8
VIT_07s0031g02580.t01	Wine grape	nucleus	18.18	19.63
VIT_00s0198g00090.t01	Wine grape	cytosol	5.9	17.52
VIT_00s0173g00220.t01	Wine grape	nucleus	6.14	15.72
VIT_13s0067g02200.t01	Wine grape	mitochondrion	6.88	14.74
CDY33381	Canola	cytosol, extracellular	10.07	12.69
VIT_00s0169g00040.t01	Wine grape	cytosol	6.63	10.59
CDY36590	Canola	cytosol	7.37	10.24
CDY19982	Canola	nucleus	14.5	9.55
Bra036204.1-P	Field mustard	nucleus	14.5	9.55
VIT_05s0102g01050.t01	Wine grape	plastid	7.13	9.45
CDY19980	Canola	nucleus	13.02	8.94
CDY35787	Canola	nucleus	18.92	8.65
CDY66823	Canola	cytosol, nucleus	18.92	8.57
Bra040585.1-P	Field mustard	nucleus	18.92	8.57
CDY00085	Canola	nucleus	17.2	8.14
Bra025408.1-P	Field mustard	nucleus	19.41	7.5
CDX85281	Canola	nucleus	16.71	7.38
CDX86356	Canola	nucleus	16.95	7.31
CDX81731	Canola	plastid	13.02	6.29
VIT_08s0040g00730.t01	Wine grape	cytosol	4.67	6.07
VIT_13s0047g01240.t01	Wine grape	nucleus	16.71	5.73
AT2G10440.1	Thale cress	nucleus	13.02	5.67
VIT_07s0031g02570.t01	Wine grape	cytosol	9.09	4.74
CDY19981	Canola	cytosol	1.97	4.57
Bra026105.1-P	Field mustard	cytosol	10.81	4.18

Protein Annotations

ArrayExpress:VIT_08s0040g00740	EMBL:FN596008	EnsemblPlants:VIT_08s0040g00740.t01	EnsemblPlantsGene:VIT_08s0040g00740	Gene3D:1.10.246.20	InterPro:MED15_KIX
PANTHER:PTHR33137	PANTHER:PTHR33137:SF8	PFAM:PF16987	ProteinID:CBI32830	ProteinID:CBI32830.3	SEG:seg
UniParc:UPI0001BE3FF1	UniProt:D7TQW0	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr8:-:11673290..11682299

Molecular Weight (calculated)

46087.1 Da

IEP (calculated)

8.617

GRAVY (calculated)

-0.816

Length

407 amino acids

Sequence
(BLAST)

001: MDDVGCKTVV NESGVDAEGW RAGFNWDARE KVVNRIVETL KNQVPCSDAN ALNELKNVAV KFEDKIFCDA ATKDDYTYRI CHRMLKMENL KYQNVSTSSS
101: TPGISQTTKL EVVGHSSSLQ NVSGFSHELV GNSVGQHVRS NAFANTQREM QGSQPSQQVA FQPHQRQHLP HQFLKQKVQK QNIHPSFMQP NIHYSHHDRQ
201: QQQILSQPTP LQSSQQLMLP TQQPRQLIGQ QLNTTLLQQN HQFGQQNNLS EHQLQQPSFY MQNMSNSFQQ PLNPQSNVSG VQQQQKIVGP QSDVLNMQVH
301: QHSVNILQQA ETNTAQKNVP WTSQTLQLHK LLGSQQKNNS LPESSPHRPQ TSPALLQPQN VIDKQKQLLK SQRVLPEASS VPVESTAHIE NPNTADWYDQ
401: AYQKVIL

Best Arabidopsis Sequence Match ( AT1G15780.2 )
(BLAST)

0001: MDNNNWRPSL PNGEPAMDTG DWRTQLPPDS RQKIVNKIME TLKKHLPFSG PEGINELRRI AARFEEKIFS GALNQTDYLR KISMKMLTME TKSQNAAGSS
0101: AAIPAANNGT SIDSIPTNQG QLLPGSLSTN QSQAPQPLLS QTMQNNTASG MTGSTALPSS MPPVSSITNN NTTSVVNQNA NMQNVAGMLQ DSSGQHGLSS
0201: NMFSGPQRQM LGRPHAMSSQ QQQQPYLYQQ QLQQQLLKQN FQSGNVPNPN SLLPSHIQQQ QQNVLQPNQL HSSQQPGVPT SATQPSTVNS APLQGLHTNQ
0301: QSSPQLSSQQ TTQSMLRQHQ SSMLRQHPQS QQASGIHQQQ SSLPQQSISP LQQQPTQLMR QQAANSSGIQ QKQMMGQHVV GDMQQQHQQR LLNQQNNVMN
0401: IQQQQSQQQP LQQPQQQQKQ QPPAQQQLMS QQNSLQATHQ NPLGTQSNVA GLQQPQQQML NSQVGNSSLQ NNQHSVHMLS QPTVGLQRTH QAGHGLYSSQ
0501: GQQSQNQPSQ QQMMPQLQSH HQQLGLQQQP NLLQQDVQQR LQASGQVTGS LLPPQNVVDQ QRQLYQSQRT LPEMPSSSLD STAQTESANG GDWQEEVYQK
0601: IKSMKETYLP DLNEIYQRVA AKLQQDSMPQ QQRSDQLEKL RQFKTMLERM IQFLSVSKSN IMPALKDKVA YYEKQIIGFL NMHRPRKPVQ QGQLPQSQMQ
0701: PMQQPQSQTV QDQSHDNQTN PQMQSMSMQG AGPRAQQSSM TNMQSNVLSS RPGVSAPQQN IPSSIPASSL ESGQGNTLNN GQQVAMGSMQ QNTSQLVNNS
0801: SASAQSGLST LQSNVNQPQL SSSLLQHQHL KQQQDQQMQL KQQFQQRQMQ QQQLQARQQQ QQQQLQARQQ AAQLQQMNDM NDLTSRQGMN VSRGMFQQHS
0901: MQGQRANYPL QQLKPGAVSS PQLLQGASPQ MSQHLSPQVD QKNTVNKMGT PLQPANSPFV VPSPSSTPLA PSPMQVDSEK PGSSSLSMGN IARQQATGMQ
1001: GVVQSLAIGT PGISASPLLQ EFTSPDGNIL NSSTITSGKP SATELPIERL IRAVKSISPQ ALSSAVSDIG SVVSMVDRIA GSAPGNGSRA SVGEDLVAMT
1101: KCRLQARNFM TQEGMMATKK MKRHTTAMPL SVASLGGSVG DNYKQFAGSE TSDLESTATS DGKKARTETE HALLEEIKEI NQRLIDTVVE ISDDEDAADP
1201: SEVAISSIGC EGTTVRFSFI AVSLSPALKA HLSSTQMSPI QPLRLLVPCS YPNGSPSLLD KLPVETRYKQ ILQSQVNRTI DFPYRVEQTS TIQLKSSQES
1301: STRNPLLETA LSSYRNTVWF LEQQRKRGPV VQSYGKVQHI AKKFVTADVA QRHSQDMGRL CSGSDL

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Oth /.../aryotes - 38082 (source: NCBI BLink). [Source:TAIR;Acc:AT1G15780]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.