Factsheet for VIT_07s0031g02580.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0273g00040.t01	Wine grape	nucleus	9.81	39.78
VIT_00s0239g00150.t01	Wine grape	cytosol	10.61	39.6
VIT_15s0045g00200.t01	Wine grape	nucleus	9.55	39.13
VIT_13s0067g02270.t01	Wine grape	cytosol	9.55	37.89
VIT_09s0070g00940.t01	Wine grape	nucleus	10.34	36.79
VIT_13s0067g02320.t01	Wine grape	cytosol	10.88	34.17
VIT_00s0239g00070.t01	Wine grape	cytosol	10.08	33.33
VIT_19s0140g00050.t01	Wine grape	nucleus	7.96	32.97
VIT_13s0067g02230.t01	Wine grape	mitochondrion	7.96	32.97
VIT_00s0239g00010.t01	Wine grape	cytosol	9.02	30.09
VIT_00s0198g00090.t01	Wine grape	cytosol	10.61	29.2
VIT_00s0198g00120.t01	Wine grape	nucleus	7.69	28.71
VIT_13s0067g02180.t01	Wine grape	mitochondrion, nucleus	10.08	26.39
VIT_09s0070g00870.t01	Wine grape	extracellular	7.69	25.44
VIT_00s0173g00220.t01	Wine grape	nucleus	10.08	23.9
VIT_13s0067g02040.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome, plastid	9.55	23.53
PGSC0003DMT400090172	Potato	cytosol	8.49	23.53
VIT_08s0040g00740.t01	Wine grape	nucleus	19.63	18.18
Bra026104.1-P	Field mustard	mitochondrion	9.02	17.09
Bra028029.1-P	Field mustard	cytosol	9.55	16.74
VIT_13s0067g02200.t01	Wine grape	mitochondrion	8.22	16.32
Bra026102.1-P	Field mustard	cytosol	6.63	15.72
AT1G15790.3	Thale cress	cytosol	7.69	15.34
VIT_00s0169g00040.t01	Wine grape	cytosol	10.08	14.9
Bra026103.1-P	Field mustard	cytosol	9.02	9.97
Bra026749.1-P	Field mustard	nucleus	28.38	8.54
Bra016651.1-P	Field mustard	endoplasmic reticulum, vacuole	29.18	8.2
AT1G15780.2	Thale cress	nucleus	29.44	8.13
VIT_05s0102g01050.t01	Wine grape	plastid	6.1	7.49
Bra026108.1-P	Field mustard	nucleus	19.63	6.58
Bra026106.1-P	Field mustard	nucleus	19.89	6.15
VIT_08s0040g00730.t01	Wine grape	cytosol	4.77	5.75
VIT_13s0047g01240.t01	Wine grape	nucleus	16.18	5.14
VIT_07s0031g02570.t01	Wine grape	cytosol	9.81	4.74
GSMUA_Achr11P...	Banana	nucleus	9.28	4.64

Protein Annotations

ArrayExpress:VIT_07s0031g02580	EMBL:FN595233	EnsemblPlants:VIT_07s0031g02580.t01	EnsemblPlantsGene:VIT_07s0031g02580	EntrezGene:100266285	EntrezGene:LOC100266285
Gene3D:1.10.246.20	InterPro:MED15_KIX	PANTHER:PTHR33137	PANTHER:PTHR33137:SF4	PFAM:PF16987	ProteinID:CCB47158
ProteinID:CCB47158.1	RefSeq:XP_002274141	RefSeq:XP_002274141.1	SEG:seg	UniParc:UPI0002109D7D	UniProt:F6H4E7
wikigene:100266285	wikigene:LOC100266285	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr7:-:18872134..18874230

Molecular Weight (calculated)

41928.5 Da

IEP (calculated)

9.492

GRAVY (calculated)

-0.656

Length

377 amino acids

Sequence
(BLAST)

001: MSTLVKNFPS SKQQALSEVK NIAVRFEEKI YNAATSQKDY LRRISVKMLS IHTAPQNTAA NVSPSNSVDT DAISTDPASH SVHSEVLEQE QSPLAPLAPL
101: ANQSLAHQEP LSQNLHSNIA SYRAQSSISL SSVVPHMTSL TKIPKPNVVG QDVKLQSMSG ILPSLVMESV GQGVSSNNTA NSWRQVQEQE DFLQPVTWRQ
201: FQNPQQFCCE QQLQHQIPNQ KFKQESITES AIQTPHAQQQ QQQQQQTLLQ PNQLLSSQQS VIQTSPIIDI SVTQSAPCSG LPQSQQSSVQ QQTKSALQQH
301: PQSVVRQQQQ PLQAPVIHHQ RTVMEQPDGL VDQQTKHSFL QKLQLISGQQ NNQSKQQQRQ LVRLGNVSGL PRQKKLL

Best Arabidopsis Sequence Match ( AT1G15780.2 )
(BLAST)

0001: MDNNNWRPSL PNGEPAMDTG DWRTQLPPDS RQKIVNKIME TLKKHLPFSG PEGINELRRI AARFEEKIFS GALNQTDYLR KISMKMLTME TKSQNAAGSS
0101: AAIPAANNGT SIDSIPTNQG QLLPGSLSTN QSQAPQPLLS QTMQNNTASG MTGSTALPSS MPPVSSITNN NTTSVVNQNA NMQNVAGMLQ DSSGQHGLSS
0201: NMFSGPQRQM LGRPHAMSSQ QQQQPYLYQQ QLQQQLLKQN FQSGNVPNPN SLLPSHIQQQ QQNVLQPNQL HSSQQPGVPT SATQPSTVNS APLQGLHTNQ
0301: QSSPQLSSQQ TTQSMLRQHQ SSMLRQHPQS QQASGIHQQQ SSLPQQSISP LQQQPTQLMR QQAANSSGIQ QKQMMGQHVV GDMQQQHQQR LLNQQNNVMN
0401: IQQQQSQQQP LQQPQQQQKQ QPPAQQQLMS QQNSLQATHQ NPLGTQSNVA GLQQPQQQML NSQVGNSSLQ NNQHSVHMLS QPTVGLQRTH QAGHGLYSSQ
0501: GQQSQNQPSQ QQMMPQLQSH HQQLGLQQQP NLLQQDVQQR LQASGQVTGS LLPPQNVVDQ QRQLYQSQRT LPEMPSSSLD STAQTESANG GDWQEEVYQK
0601: IKSMKETYLP DLNEIYQRVA AKLQQDSMPQ QQRSDQLEKL RQFKTMLERM IQFLSVSKSN IMPALKDKVA YYEKQIIGFL NMHRPRKPVQ QGQLPQSQMQ
0701: PMQQPQSQTV QDQSHDNQTN PQMQSMSMQG AGPRAQQSSM TNMQSNVLSS RPGVSAPQQN IPSSIPASSL ESGQGNTLNN GQQVAMGSMQ QNTSQLVNNS
0801: SASAQSGLST LQSNVNQPQL SSSLLQHQHL KQQQDQQMQL KQQFQQRQMQ QQQLQARQQQ QQQQLQARQQ AAQLQQMNDM NDLTSRQGMN VSRGMFQQHS
0901: MQGQRANYPL QQLKPGAVSS PQLLQGASPQ MSQHLSPQVD QKNTVNKMGT PLQPANSPFV VPSPSSTPLA PSPMQVDSEK PGSSSLSMGN IARQQATGMQ
1001: GVVQSLAIGT PGISASPLLQ EFTSPDGNIL NSSTITSGKP SATELPIERL IRAVKSISPQ ALSSAVSDIG SVVSMVDRIA GSAPGNGSRA SVGEDLVAMT
1101: KCRLQARNFM TQEGMMATKK MKRHTTAMPL SVASLGGSVG DNYKQFAGSE TSDLESTATS DGKKARTETE HALLEEIKEI NQRLIDTVVE ISDDEDAADP
1201: SEVAISSIGC EGTTVRFSFI AVSLSPALKA HLSSTQMSPI QPLRLLVPCS YPNGSPSLLD KLPVETRYKQ ILQSQVNRTI DFPYRVEQTS TIQLKSSQES
1301: STRNPLLETA LSSYRNTVWF LEQQRKRGPV VQSYGKVQHI AKKFVTADVA QRHSQDMGRL CSGSDL

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Oth /.../aryotes - 38082 (source: NCBI BLink). [Source:TAIR;Acc:AT1G15780]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.