Factsheet for Os06t0228200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 1
plasma membrane 1
endoplasmic reticulum 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18515498

gfp PMID: 18515498 doi

N Yamaji, N Mitatni, JF Ma

Research Institute for Bioresources, Okayama University, Kurashiki 710-0046, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89472	Sorghum	cytosol, plasma membrane, plastid	89.93	90.85
Zm00001d037228_P001	Maize	cytosol, plasma membrane, plastid	87.58	88.78
Zm00001d044826_P001	Maize	cytosol, endoplasmic reticulum, plastid	88.25	87.38
HORVU7Hr1G038220.1	Barley	endoplasmic reticulum, golgi, peroxisome	87.58	87.0
TraesCS7A01G187800.1	Wheat	endoplasmic reticulum, golgi, peroxisome	86.91	86.33
TraesCS7D01G188800.2	Wheat	plasma membrane	86.58	86.0
TraesCS7B01G092900.1	Wheat	endoplasmic reticulum, golgi, peroxisome	86.24	85.67
Os02t0745100-01	Rice	plasma membrane, vacuole	76.85	76.85
GSMUA_Achr10P...	Banana	endoplasmic reticulum, peroxisome, plasma membrane	62.75	63.82
GSMUA_Achr5P23340_001	Banana	peroxisome	62.75	63.82
GSMUA_Achr9P27460_001	Banana	cytosol, peroxisome, plasma membrane	58.72	58.14
VIT_14s0108g00700.t01	Wine grape	peroxisome	57.05	57.82
PGSC0003DMT400035640	Potato	endoplasmic reticulum, extracellular	33.89	56.74
GSMUA_Achr6P02660_001	Banana	cytosol, endoplasmic reticulum, golgi, mitochondrion	61.07	56.35
Solyc03g013340.2.1	Tomato	cytosol	53.02	55.83
PGSC0003DMT400035638	Potato	cytosol, golgi, plasma membrane	21.81	49.24
KRH01175	Soybean	plastid	44.63	45.08
KRH40096	Soybean	plastid	43.96	44.71
Os02t0232900-01	Rice	cytoskeleton, cytosol, plasma membrane	38.93	40.85
Os06t0552700-01	Rice	cytosol, peroxisome, plastid	35.57	38.83
Os01t0202800-00	Rice	cytosol, plasma membrane, plastid	33.89	37.83
Os10t0513200-01	Rice	plasma membrane	39.26	37.62
Os05t0205000-01	Rice	cytosol	11.07	37.5
Os08t0152100-00	Rice	endoplasmic reticulum, plasma membrane, vacuole	24.5	34.43
Os05t0205050-00	Rice	cytosol, peroxisome, plastid	23.83	32.87
Os12t0204100-01	Rice	cytosol, peroxisome, plastid	27.52	28.18
Os01t0112400-01	Rice	plasma membrane	26.85	27.97
Os08t0152000-01	Rice	cytosol, plasma membrane, plastid	28.52	27.87
Os08t0151900-00	Rice	endoplasmic reticulum, plasma membrane	18.12	25.12

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.1	EntrezGene:4340558	EMBL:AB253627	EMBL:AK072966	EMBL:AK104037
EMBL:AK112022	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	ProteinID:BAD37471.1	ProteinID:BAF19121.1	ProteinID:BAS96884.1
ProteinID:EAZ36353.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0005887	GO:GO:0006810	GO:GO:0006833	GO:GO:0008150	GO:GO:0015250	GO:GO:0015267
GO:GO:0016020	GO:GO:0016021	GO:GO:0034220	GO:GO:0055085	InterPro:IPR023271	InterPro:MIP
InterPro:MIP_CS	EnsemblPlantsGene:Os06g0228200	EnsemblPlants:Os06t0228200-01	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221
PANTHER:PTHR19139	PANTHER:PTHR19139:SF142	UniProt:Q67WJ8	SUPFAM:SSF81338	TMHMM:TMhelix	UniParc:UPI00004262CD
RefSeq:XP_015644134.1	SEG:seg	:	:	:	:

Description

LOW SILICON RICE 6Aquaporin NIP III subfamily protein, Aquaporin, Silicon influx transporter, Water transport (Os06t0228200-01);Similar to NOD26-like membrane integral protein. (Os06t0228200-03)

Coordinates

chr6:-:6648404..6653002

Molecular Weight (calculated)

31828.5 Da

IEP (calculated)

7.539

GRAVY (calculated)

0.491

Length

298 amino acids

Sequence
(BLAST)

001: MASTTAPSRT NSRVNYSNEI HDLSTVQSVS AVPSVYYPEK SFADIFPPNL LKKVISEVVA TFLLVFVTCG AASIYGEDMK RISQLGQSVV GGLIVTVMIY
101: ATGHISGAHM NPAVTLSFAF FRHFPWIQVP FYWAAQFTGA MCAAFVLRAV LYPIEVLGTT TPTGPHWHAL VIEIVVTFNM MFVTCAVATD SRAVGELAGL
201: AVGSAVCITS IFAGPVSGGS MNPARTLAPA VASNVYTGLW IYFLGPVVGT LSGAWVYTYI RFEEAPAAAG GAAPQKLSSF KLRRLQSQSM AADEFDNV

Best Arabidopsis Sequence Match ( AT5G37820.2 )
(BLAST)

001: MYKSSSTSKF STHQKFQFLF YFSPNKKLTS TFFLKKMTSH GEEIEDEQIS RIEKGNCKDS QGGMETAICS SPSIVCLTQK LIAEMIGTYF IIFSGCGVVV
101: VNVLYGGTIT FPGICVTWGL IVMVMIYSTG HISGAHFNPA VTVTFAVFRR FPWYQVPLYI GAQLTGSLLA SLTLRLMFNV TPKAFFGTTP TDSSGQALVA
201: EIIISFLLMF VISGVATDSR ATGELAGIAV GMTIILNVFV AGPISGASMN PARSLGPAIV MGRYKGIWVY IVGPFVGIFA GGFVYNFMRF TDKPLRELTK
301: SASFLRSVAQ KDNASKSDG

Arabidopsis Description

NIP4;2NOD26-like intrinsic protein 4;2 [Source:TAIR;Acc:AT5G37820]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.