Factsheet for PGSC0003DMT400043020

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 7
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078706	Potato	plasma membrane	84.93	85.35
VIT_00s1353g00010.t01	Wine grape	plasma membrane	79.16	79.55
KRH77190	Soybean	plasma membrane	76.71	77.47
AT5G65700.1	Thale cress	plasma membrane	76.03	77.47
KRH28297	Soybean	plasma membrane	76.61	77.37
CDY45620	Canola	plasma membrane	73.39	77.08
CDY08759	Canola	plasma membrane	73.19	77.03
Bra024413.1-P	Field mustard	plasma membrane, plastid	74.76	76.63
KRH04350	Soybean	plasma membrane	75.64	76.53
KRH58184	Soybean	plasma membrane	75.24	76.29
CDY23037	Canola	plasma membrane	71.43	75.49
GSMUA_Achr4P14590_001	Banana	cytosol	52.74	75.28
Bra012925.1-P	Field mustard	plasma membrane	72.9	75.03
CDY02112	Canola	plasma membrane	71.04	74.92
AT3G49670.1	Thale cress	plasma membrane	73.29	74.75
Os03t0773700-01	Rice	plasma membrane	63.5	73.33
HORVU5Hr1G098840.2	Barley	cytosol, plasma membrane	62.92	72.9
GSMUA_Achr4P03140_001	Banana	plasma membrane	54.4	72.87
GSMUA_Achr5P02010_001	Banana	plasma membrane, vacuole	50.78	70.61
EER93376	Sorghum	plasma membrane	70.84	70.29
HORVU2Hr1G061090.3	Barley	plasma membrane, plastid	66.14	70.05
Zm00001d034240_P004	Maize	plasma membrane	70.25	69.37
GSMUA_Achr4P32160_001	Banana	plasma membrane	50.68	69.16
Os07t0134200-01	Rice	plasma membrane	68.88	68.82
GSMUA_Achr4P07370_001	Banana	plasma membrane	52.64	68.71
Zm00001d013162_P001	Maize	plasma membrane	68.88	68.48
GSMUA_Achr7P00790_001	Banana	plasma membrane	52.15	68.25
TraesCS2B01G266700.1	Wheat	plasma membrane	68.2	68.13
EER97948	Sorghum	plasma membrane	68.69	68.09
TraesCS5B01G412400.1	Wheat	plasma membrane	68.69	68.09
TraesCS5D01G417400.1	Wheat	plasma membrane	68.88	68.02
TraesCS2A01G268300.1	Wheat	vacuole	67.81	67.74
TraesCS5A01G407500.2	Wheat	plasma membrane	68.4	67.67
Zm00001d018752_P001	Maize	mitochondrion, plasma membrane	68.4	67.41
TraesCS2D01G255900.1	Wheat	plastid	67.81	65.07
GSMUA_Achr7P27590_001	Banana	golgi, plasma membrane	39.14	64.52
KXG39823	Sorghum	plasma membrane	61.06	62.34
GSMUA_Achr3P30640_001	Banana	plasma membrane	50.2	62.33
Os03t0228800-01	Rice	plasma membrane	60.86	61.77
TraesCS4D01G235800.1	Wheat	plasma membrane	60.18	61.69
HORVU4Hr1G065620.1	Barley	plasma membrane	59.98	61.61
TraesCS4A01G059000.1	Wheat	plasma membrane	59.98	61.48
TraesCS4B01G234600.1	Wheat	plasma membrane	59.78	61.28
Zm00001d028317_P001	Maize	plasma membrane	61.15	60.5
PGSC0003DMT400064038	Potato	plasma membrane	53.62	54.85
PGSC0003DMT400016060	Potato	plasma membrane	51.37	54.69
PGSC0003DMT400025747	Potato	plasma membrane	50.68	52.75
PGSC0003DMT400022119	Potato	plasma membrane	41.0	40.76
PGSC0003DMT400010618	Potato	plasma membrane	40.31	40.71
PGSC0003DMT400048524	Potato	plasma membrane	40.12	40.39
PGSC0003DMT400018675	Potato	plasma membrane	40.02	40.18
PGSC0003DMT400043459	Potato	plasma membrane	38.45	35.83
PGSC0003DMT400079864	Potato	plasma membrane	38.85	35.8
PGSC0003DMT400064535	Potato	plasma membrane	37.77	35.48
PGSC0003DMT400059664	Potato	plasma membrane	37.28	35.34
PGSC0003DMT400030278	Potato	plasma membrane	38.26	35.29
PGSC0003DMT400030886	Potato	plasma membrane	32.49	34.62
PGSC0003DMT400063787	Potato	plasma membrane, plastid	35.42	34.38
PGSC0003DMT400040886	Potato	plasma membrane	37.96	34.37
PGSC0003DMT400046807	Potato	plasma membrane	35.42	32.7
PGSC0003DMT400057334	Potato	plasma membrane	33.46	31.58
PGSC0003DMT400023681	Potato	plasma membrane	33.27	30.8
PGSC0003DMT400076250	Potato	plasma membrane	36.2	30.08
PGSC0003DMT400008336	Potato	plasma membrane	32.39	29.69
PGSC0003DMT400008335	Potato	plasma membrane	31.6	28.66
PGSC0003DMT400059346	Potato	plasma membrane	34.44	28.05
PGSC0003DMT400076247	Potato	cytosol	4.6	27.17

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102580156	MapMan:18.4.1.11	Gene3D:3.30.200.20	Gene3D:3.80.10.10	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:IPR001611	InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_4	InterPro:Leu-rich_rpt_typical-subtyp	UniProt:M1BDX5	PFAM:PF00069	PFAM:PF00560	PFAM:PF08263
PFAM:PF12799	EnsemblPlantsGene:PGSC0003DMG400016685	PGSC:PGSC0003DMG400016685	EnsemblPlants:PGSC0003DMT400043020	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR27000	PANTHER:PTHR27000:SF49	InterPro:Prot_kinase_dom	SMART:SM00220	SMART:SM00369	SUPFAM:SSF52047
SUPFAM:SSF52058	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002955383
RefSeq:XP_006364007.1	SEG:seg	:	:	:	:

Description

Receptor protein kinase CLAVATA1 [Source:PGSC_GENE;Acc:PGSC0003DMG400016685]

Coordinates

chr3:+:5761324..5765105

Molecular Weight (calculated)

112041.0 Da

IEP (calculated)

6.981

GRAVY (calculated)

-0.028

Length

1022 amino acids

Sequence
(BLAST)

0001: MRFLLLFFLS LILHFHLLHF TTAKPPYVPE YRALLSLKTS ITDDPQSALL SWNISTSHCT WRGVTCDRYR HVTSLDISGF NLTGTLTPEV GHLRFLLNLS
0101: VAVNQFSGPI PIELSFIPNL SYLNLSNNIF NLSFPPQLTH LRYLKVLDIY NNNMTGDLPV GVYNLTNLRH LHLGGNFFSG SIPPEYGRFP FLEYLAVSGN
0201: ALVGMIPPEI GNITTLRELY IGYYNTFSGG LPAEIGNLSE LIRLDAANCG LSGEIPPEIG KLQKLDTLFL QVNGLSGSVT PELGNLKSLK SLDLSNNMLS
0301: GEIPFTFTEL KNLTLLNLFR NKLYGSIPEF IEDLPKLEVL QLWENNFTGS IPQGLGKNSK LTNVDISTNK LTGNLPPNMC SGNKLQTLIT LGNFLFGPIP
0401: ESLGECQSLN RIRMGENFLN GSIPKGLFSL PKLSQVELQD NLLTGTFPVT GSVSSSLGQI CLSNNRFTGP LPSSIGNFTG VQKLLLDGNK FSGQIPAELG
0501: KLQQLSKMDF SGNSFSGLIP PEISRCKALT YVDLSRNKLS GEVPTEITGM RILNYLNVSR NQLVGSIPAP IAAMQSLTSV DFSYNNLSGL VPGTGQFSYF
0601: NYTSFIGNPD LCGPYLGPCK EGIVDGVSRP HERGAFSPSM KLLLVIGLLV CSIVFAIAAI IKARSLKKAS QARAWKLTAF QRLDFTCDDV LECLKEDNII
0701: GKGGAGIVYK GVMPNGELVA VKRLPVMSRG SSHDHGFNAE IQTLGSIRHR HIVRLLGFCS NHETNLLVYE YMPNGSLGEM LHGKKGGHLH WDTRYKIALE
0801: AAKGLCYLHH DCSPLILHRD VKSNNILLDS SFEAHVADFG LAKFLQDSGT SECMSAIAGS YGYIAPEYAY TLKVDEKSDV YSFGVVLLEL VSGKKPVGEF
0901: GDGVDIVQWV RRMTDGKKEG VLKILDPRLS TVPLHEVMHV FYVAMLCVEE QAVERPKMRE VVQMLTELPK PSGPKTEDST ITESPPSSGP ALESPTSTPG
1001: DTKDQYHHQP SPQSPPPDLL SI

Best Arabidopsis Sequence Match ( AT5G65700.1 )
(BLAST)

0001: MKLFLLLLFL LHISHTFTAS RPISEFRALL SLKTSLTGAG DDKNSPLSSW KVSTSFCTWI GVTCDVSRRH VTSLDLSGLN LSGTLSPDVS HLRLLQNLSL
0101: AENLISGPIP PEISSLSGLR HLNLSNNVFN GSFPDEISSG LVNLRVLDVY NNNLTGDLPV SVTNLTQLRH LHLGGNYFAG KIPPSYGSWP VIEYLAVSGN
0201: ELVGKIPPEI GNLTTLRELY IGYYNAFEDG LPPEIGNLSE LVRFDGANCG LTGEIPPEIG KLQKLDTLFL QVNVFSGPLT WELGTLSSLK SMDLSNNMFT
0301: GEIPASFAEL KNLTLLNLFR NKLHGEIPEF IGDLPELEVL QLWENNFTGS IPQKLGENGK LNLVDLSSNK LTGTLPPNMC SGNKLETLIT LGNFLFGSIP
0401: DSLGKCESLT RIRMGENFLN GSIPKGLFGL PKLTQVELQD NYLSGELPVA GGVSVNLGQI SLSNNQLSGP LPPAIGNFTG VQKLLLDGNK FQGPIPSEVG
0501: KLQQLSKIDF SHNLFSGRIA PEISRCKLLT FVDLSRNELS GEIPNEITAM KILNYLNLSR NHLVGSIPGS ISSMQSLTSL DFSYNNLSGL VPGTGQFSYF
0601: NYTSFLGNPD LCGPYLGPCK DGVAKGGHQS HSKGPLSASM KLLLVLGLLV CSIAFAVVAI IKARSLKKAS ESRAWRLTAF QRLDFTCDDV LDSLKEDNII
0701: GKGGAGIVYK GVMPNGDLVA VKRLAAMSRG SSHDHGFNAE IQTLGRIRHR HIVRLLGFCS NHETNLLVYE YMPNGSLGEV LHGKKGGHLH WDTRYKIALE
0801: AAKGLCYLHH DCSPLIVHRD VKSNNILLDS NFEAHVADFG LAKFLQDSGT SECMSAIAGS YGYIAPEYAY TLKVDEKSDV YSFGVVLLEL VTGRKPVGEF
0901: GDGVDIVQWV RKMTDSNKDS VLKVLDPRLS SIPIHEVTHV FYVAMLCVEE QAVERPTMRE VVQILTEIPK LPPSKDQPMT ESAPESELSP KSGVQSPPDL
1001: LNL

Arabidopsis Description

BAM1Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Source:UniProtKB/Swiss-Prot;Acc:O49545]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.