Factsheet for PGSC0003DMT400078487

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g008300.1.1	Tomato	mitochondrion	59.42	90.44
VIT_01s0011g04710.t01	Wine grape	cytosol	53.86	57.18
KRG90987	Soybean	nucleus	52.66	53.56
KRH35767	Soybean	nucleus	52.17	53.07
CDY21409	Canola	cytosol	35.75	41.46
CDY04749	Canola	cytosol	35.51	41.29
Bra024557.1-P	Field mustard	cytosol	35.27	40.9
GSMUA_Achr7P12020_001	Banana	cytosol	33.09	39.14
GSMUA_Achr1P23080_001	Banana	cytosol	29.47	38.01
GSMUA_Achr2P22760_001	Banana	cytosol	31.4	37.04
GSMUA_Achr8P31620_001	Banana	cytosol	33.57	36.68
GSMUA_Achr3P01290_001	Banana	cytosol	32.85	36.66
GSMUA_Achr10P...	Banana	cytosol	30.43	36.21
Os01t0125600-01	Rice	cytosol	35.51	35.0
GSMUA_Achr9P19310_001	Banana	cytosol	32.85	34.96
AT1G23000.2	Thale cress	cytosol	35.02	34.69
TraesCS3D01G031400.1	Wheat	cytosol	34.3	34.38
TraesCS3A01G048000.1	Wheat	cytosol	34.06	33.89
TraesCS3B01G034100.1	Wheat	cytosol	33.57	33.1
EES02570	Sorghum	cytosol	33.82	31.32
Zm00001d040040_P001	Maize	cytosol	34.06	30.52
Zm00001d008515_P001	Maize	cytosol	33.09	29.59
HORVU3Hr1G004420.1	Barley	nucleus	27.54	26.64
PGSC0003DMT400073578	Potato	cytosol	25.85	24.54
PGSC0003DMT400078636	Potato	cytosol	19.08	22.19
PGSC0003DMT400063687	Potato	cytosol	19.57	21.77
PGSC0003DMT400083194	Potato	cytosol	27.78	20.35
PGSC0003DMT400029504	Potato	nucleus	14.98	20.06

Protein Annotations

EntrezGene:102605275	Gene3D:3.30.70.100	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0006810
GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121
UniProt:M1D079	PFAM:PF00403	EnsemblPlantsGene:PGSC0003DMG400030552	PGSC:PGSC0003DMG400030552	EnsemblPlants:PGSC0003DMT400078487	PFscan:PS50846
PANTHER:PTHR22814	PANTHER:PTHR22814:SF150	SUPFAM:SSF55008	UniParc:UPI0002959EBA	RefSeq:XP_006344220.1	SEG:seg

Description

Chloroplast-targeted copper chaperone [Source:PGSC_GENE;Acc:PGSC0003DMG400030552]

Coordinates

chr5:+:3991348..3993998

Molecular Weight (calculated)

46007.9 Da

IEP (calculated)

8.138

GRAVY (calculated)

-0.896

Length

414 amino acids

Sequence
(BLAST)

001: MTKDEDFKLL KIQTCELRVN IHCDGCKQKV KKLLQRIEGV YQVNIDFEHQ KVTVYGSVDS GTLIKRLVKA RKHAELWSLN NTNPAQKQQN PNCIKDNNKN
101: KQNQKQQGII KNQHQQKFNL VPEEIDYLDE DDDDEDDDGF PEEEMRFVRD GARQMAILRQ QQAEANNKKA MAAAIANGKV NNNNVAAHGK KTGPIQNMPM
201: KANPGCGGID PRTINAMKMN MNNAASAAQL GPNVNLNEAA KMGMVGAKDL NAMMNLAGFN GNNNNGTTTT NNNNNNVAAF LNANGFQGHQ NNAIPGSLST
301: GGHHHPSSAS MLMNMNNGGQ QQQQFNPSQM LMNFQNRHAM QHQQQQPQMM YNRSPLVPPA TGYYYNNTNN NYGQVPYTTY ADPYYYTSAA ANADQSATNT
401: HMFSDENPSS CSIM

Best Arabidopsis Sequence Match ( AT1G23000.1 )
(BLAST)

001: MTKDEDFKLL KIQTFSLRVN IHCEGCNKKV KKLLQRIEGV CHVKIEAEHQ KVTVSGSVDS ATLINKLVKA GKHAELWSPN PNQNQPQKPK TNDFIKNVNQ
101: KGQKQGSAKS GIEACKPKNG PKGAAFVAEE DGDGSEEEDG DVQFPKPANQ QQQQNVVNAK KNSGGAAMNN GNNGVNAASK KVNQKQSNHN QNTQQVMAAM
201: RMRTAGKMST GVEANEIGAL MGLAGFNGAT NAVNHPPNGI QQQLQAPPLN NVNGVTNHNL TNSNGGMMMN MNGYNNHHPM NMQSRQMMHQ PQQMMYQRSS
301: FVPASSNGYY YNYTPSPYSY YPYYPYASDQ YQQQSSHSHA TNMSSEEDAG NNNSCNIM

Arabidopsis Description

Heavy metal transport/detoxification superfamily protein [Source:TAIR;Acc:AT1G23000]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.