Factsheet for VIT_01s0011g04710.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90987	Soybean	nucleus	70.26	67.32
KRH35767	Soybean	nucleus	69.23	66.34
PGSC0003DMT400078487	Potato	cytosol	57.18	53.86
CDY04749	Canola	cytosol	42.05	46.07
Solyc05g008300.1.1	Tomato	mitochondrion	32.05	45.96
GSMUA_Achr8P31620_001	Banana	cytosol	44.36	45.65
CDY21409	Canola	cytosol	41.54	45.38
GSMUA_Achr1P23080_001	Banana	cytosol	37.18	45.17
Bra024557.1-P	Field mustard	cytosol	41.03	44.82
GSMUA_Achr9P19310_001	Banana	cytosol	44.1	44.22
GSMUA_Achr2P22760_001	Banana	cytosol	39.49	43.87
GSMUA_Achr7P12020_001	Banana	cytosol	38.72	43.14
GSMUA_Achr3P01290_001	Banana	cytosol	40.77	42.86
GSMUA_Achr10P...	Banana	cytosol	36.92	41.38
Os01t0125600-01	Rice	cytosol	44.36	41.19
TraesCS3D01G031400.1	Wheat	cytosol	42.56	40.19
TraesCS3A01G048000.1	Wheat	cytosol	42.31	39.66
TraesCS3B01G034100.1	Wheat	cytosol	42.31	39.29
AT1G23000.2	Thale cress	cytosol	40.77	38.04
EES02570	Sorghum	cytosol	42.82	37.36
Zm00001d040040_P001	Maize	cytosol	42.82	36.15
VIT_14s0006g01780.t01	Wine grape	extracellular	17.95	35.53
Zm00001d008515_P001	Maize	cytosol	41.03	34.56
HORVU3Hr1G004420.1	Barley	nucleus	35.13	32.01
VIT_05s0020g02690.t01	Wine grape	cytosol	35.38	28.11
VIT_07s0005g00050.t01	Wine grape	cytosol	18.97	27.61
VIT_14s0128g00190.t01	Wine grape	cytosol	35.64	27.36
VIT_05s0020g01450.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	20.0	25.49
VIT_14s0060g02090.t01	Wine grape	cytosol	21.79	24.29

Protein Annotations

EntrezGene:100249220	wikigene:100249220	Gene3D:3.30.70.100	MapMan:35.1	ProteinID:CCB50843	ProteinID:CCB50843.1
ncoils:Coil	UniProt:F6HFJ4	EMBL:FN595752	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987
GO:GO:0019725	GO:GO:0030001	GO:GO:0046872	GO:GO:0046914	GO:GO:0046916	InterPro:HMA_dom
InterPro:HMA_dom_sf	InterPro:IPR006121	EntrezGene:LOC100249220	wikigene:LOC100249220	PFAM:PF00403	PFscan:PS50846
PANTHER:PTHR22814	PANTHER:PTHR22814:SF150	SUPFAM:SSF55008	TIGR:TC64372	TIGR:TC64858	UniParc:UPI00015C8536
ArrayExpress:VIT_01s0011g04710	EnsemblPlantsGene:VIT_01s0011g04710	EnsemblPlants:VIT_01s0011g04710.t01	unigene:Vvi.15886	RefSeq:XP_002284132	RefSeq:XP_002284132.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:4242907..4245658

Molecular Weight (calculated)

42630.1 Da

IEP (calculated)

8.148

GRAVY (calculated)

-0.804

Length

390 amino acids

Sequence
(BLAST)

001: MTKDEDFKLL KIQTCVLKVN IHCDGCKQKV KKLLQRIEGV YTVNIDAEQQ RVTVSGSVDS GTLIKKLVKA GKHAELWSQK SNQNQKQKTN CIKDDKNNKG
101: QKQGLIKGLE AFKTQQKFPV FSSEEDEDDF DDDEEDYEEE ELRFLQEKAN QLSLLRQQAL DASNAKKGFG AIAASNNGKI NNNVGNGNVQ KKGNPNQNMG
201: MKGSPGGIDQ KTIAALKMNN PHLVGGGNIN SGEVKRGNDI NSMMGLGGFH GNGGNVAATA AALGGNSNAL GGFQIQPNNG FQGSSTGFPN GGFATGHHHP
301: SPMLMNLNGN QYNHPSQMMM NMNMQQNRHA PMQQPQMMYH RSPFIPPSTG YYYNYSPALS PYTHCDTNYS GDHSASHMFS DENTSSCSIM

Best Arabidopsis Sequence Match ( AT1G23000.1 )
(BLAST)

001: MTKDEDFKLL KIQTFSLRVN IHCEGCNKKV KKLLQRIEGV CHVKIEAEHQ KVTVSGSVDS ATLINKLVKA GKHAELWSPN PNQNQPQKPK TNDFIKNVNQ
101: KGQKQGSAKS GIEACKPKNG PKGAAFVAEE DGDGSEEEDG DVQFPKPANQ QQQQNVVNAK KNSGGAAMNN GNNGVNAASK KVNQKQSNHN QNTQQVMAAM
201: RMRTAGKMST GVEANEIGAL MGLAGFNGAT NAVNHPPNGI QQQLQAPPLN NVNGVTNHNL TNSNGGMMMN MNGYNNHHPM NMQSRQMMHQ PQQMMYQRSS
301: FVPASSNGYY YNYTPSPYSY YPYYPYASDQ YQQQSSHSHA TNMSSEEDAG NNNSCNIM

Arabidopsis Description

Heavy metal transport/detoxification superfamily protein [Source:TAIR;Acc:AT1G23000]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.