Factsheet for VIT_05s0020g02690.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11382	Soybean	cytosol	58.25	58.13
KRH20903	Soybean	cytosol	57.43	56.06
KRH51031	Soybean	cytosol	55.4	55.51
Solyc01g080070.2.1	Tomato	cytosol	47.45	54.82
AT3G06130.1	Thale cress	cytosol	51.93	53.91
KRH02117	Soybean	cytosol	54.38	53.51
CDY05234	Canola	nucleus	27.09	53.41
PGSC0003DMT400083194	Potato	cytosol	60.69	52.74
Bra020774.1-P	Field mustard	cytosol	51.73	52.59
CDY71358	Canola	nucleus	25.46	52.3
CDY71877	Canola	cytosol	45.42	51.74
CDY13960	Canola	cytosol	51.73	51.31
CDY58340	Canola	cytosol	46.64	49.89
GSMUA_Achr8P00190_001	Banana	cytosol	26.68	49.62
CDY47193	Canola	cytosol	47.05	48.63
Bra001184.1-P	Field mustard	cytosol	45.21	47.03
AT5G19090.1	Thale cress	cytosol	56.01	46.85
Bra023702.1-P	Field mustard	cytosol	55.4	45.26
GSMUA_Achr10P...	Banana	cytosol	37.88	44.39
VIT_14s0128g00190.t01	Wine grape	cytosol	45.82	44.29
GSMUA_Achr3P09060_001	Banana	cytosol, mitochondrion, nucleus	36.25	44.06
GSMUA_Achr8P08580_001	Banana	cytosol	34.42	44.01
CDX92558	Canola	cytosol	49.29	43.37
GSMUA_Achr8P00380_001	Banana	cytosol	36.05	43.17
GSMUA_Achr8P21830_001	Banana	endoplasmic reticulum	35.44	41.33
Os11t0147500-01	Rice	cytosol	42.97	40.97
Os12t0144600-01	Rice	cytosol	43.58	40.84
GSMUA_Achr11P...	Banana	cytosol	30.96	40.53
Zm00001d017393_P001	Maize	plastid	13.85	40.48
TraesCS5B01G131600.1	Wheat	cytosol	42.36	40.08
TraesCS5A01G133900.1	Wheat	cytosol	42.36	39.92
TraesCS5D01G141600.1	Wheat	cytosol	42.57	39.89
GSMUA_Achr11P...	Banana	cytosol, extracellular	19.14	39.0
Bra002209.1-P	Field mustard	cytosol, peroxisome, plastid, vacuole	52.55	38.91
CDY24716	Canola	cytosol	21.38	37.23
HORVU5Hr1G040920.2	Barley	cytosol	34.83	36.08
EES04840	Sorghum	cytosol	35.85	35.99
VIT_01s0011g04710.t01	Wine grape	cytosol	28.11	35.38
Zm00001d053438_P002	Maize	cytosol	35.03	35.1
Zm00001d016149_P001	Maize	cytosol	33.6	35.03
Zm00001d023372_P001	Maize	cytosol	38.49	34.3
EES15655	Sorghum	cytosol	39.1	34.04
VIT_14s0006g01780.t01	Wine grape	extracellular	13.65	34.01
TraesCS4B01G134000.1	Wheat	cytosol, mitochondrion, nucleus	38.09	32.75
TraesCS4A01G184700.1	Wheat	cytosol, mitochondrion, nucleus	37.07	32.21
TraesCS4D01G128900.1	Wheat	cytosol, mitochondrion, nucleus	38.29	31.86
Zm00001d004931_P001	Maize	cytosol, nucleus, plasma membrane	34.22	31.4
VIT_07s0005g00050.t01	Wine grape	cytosol	16.5	30.22
OQU79299	Sorghum	cytosol	24.03	30.18
HORVU4Hr1G025770.8	Barley	endoplasmic reticulum	36.86	29.97
VIT_05s0020g01450.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	17.31	27.78
VIT_14s0060g02090.t01	Wine grape	cytosol	19.55	27.43
OQU82864	Sorghum	cytosol	25.46	26.54
KXG27723	Sorghum	nucleus	30.96	25.55
EES07966	Sorghum	cytosol, nucleus, peroxisome	24.85	24.3
GSMUA_Achr11P...	Banana	endoplasmic reticulum	13.65	20.24

Protein Annotations

EntrezGene:100261454	wikigene:100261454	Gene3D:3.30.70.100	MapMan:35.1	EMBL:AM437305	ProteinID:CAN78371
ProteinID:CAN78371.1	ProteinID:CCB50388	ProteinID:CCB50388.1	UniProt:F6HDL7	EMBL:FN595749	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0030001	GO:GO:0046872	GO:GO:0046914
GO:GO:0046916	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121	EntrezGene:LOC100261454	wikigene:LOC100261454
PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF278	SUPFAM:SSF55008	TIGR:TC65087
TIGR:TC67565	UniParc:UPI00015C818B	ArrayExpress:VIT_05s0020g02690	EnsemblPlantsGene:VIT_05s0020g02690	EnsemblPlants:VIT_05s0020g02690.t01	unigene:Vvi.12520
RefSeq:XP_002277654	RefSeq:XP_002277654.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:+:4417494..4420322

Molecular Weight (calculated)

51005.6 Da

IEP (calculated)

8.780

GRAVY (calculated)

-0.824

Length

491 amino acids

Sequence
(BLAST)

001: MSKEEFLKIQ TCVLKVNIHC DGCKHKVKKI LHKIEGVYTT KIDADLGKVT VSGNVDAATL MKKLNKAGKH AELWGAPKAN NQNQLNNQLK NLQLDNGGKG
101: GGKKGGNNNG GNQPKGGHPN PQQQLQQLQQ QMKGFQDLKL PPLGQAPKTV KFSLPEDDGM SDEFDDEFDE EDLEDDEFYD ELDDIPHQLP NKMKPNAVNG
201: QGTQMPNLMM LNGMMNAQQM MNAQAMMNDK KAGGNVGNGK KGGGGGAVPI QINGNDGKNG GKKGGGGGNN NGGNQNQGGI GGGAKNGGKN GGGAPSEGKN
301: GNNAGGGNNK IGNNGGGGNG NGGKKGGAAN DVHAINNMPN AMHNMAAIRG LGGGNMGQMP MGPMGNMPMG QMGNMSMAQM GNNMPAVQGL PAGAINAGGA
401: GGGAPPGYGG GVPPGYFQGA GPEVMAGNPY YQQQLAAMMM NQQRAHGNER FQPMMYARPP PAVNYLPPYP PQPDPYTHFF SDENTSSCNV M

Best Arabidopsis Sequence Match ( AT5G19090.1 )
(BLAST)

001: MSKEEFMKIQ TCVLKVNIHC DGCKQKVKKI LQKIEGVFTT KIDAELGKVT VSGNVDPSVL IKKLLKSGKH AEIWGAPKGG SNNNQNQPNL ANQFKAMQID
101: HGGKGGGGGG GGPANNNKGQ KIGGGGGGGG GGGGGGGGGP PKMVIPQLTP QQMQQLNPQQ LQQLQQLQQM KGFQDLKLPP QLKGGPGPGP GSVPMNKNPQ
201: MPNNPNQKAV KFNVPDDDDE EDFSDEFDDE FDEDDDEFDD DLEDDEFDDH PPPPNKMKPM MGGGNMIMPN NMMPNMMMPN AQQMLNAHKN GGGPGPAGGK
301: IEGKGMPFPV QMGGGGGGPG GKKGGPGGGG GNMGNQNQGG GGKNGGKGGG GHPLDGKMGG GGGGPNGNKG GGGVQMNGGP NGGKKGGGGG GGGGGGPMSG
401: GLPPGFRPMG GGGGGGGGPQ SMSMPMGGAM GGPMGSLPQM GGGPGPMSNN MQAVQGLPAM GPGGGGGGGP SAEAPPGYFQ GQVSGNGGGG QDSMPGNPYL
501: QQQQQQQQQQ YLAAVMNQQR SMGNERFQPM MYARPPPAVN YMPPQPQPHQ QHPYPYPYPY PPQYPPHNGD QYSDYFNDEN TSSCNIM

Arabidopsis Description

HIPP33Heavy metal-associated isoprenylated plant protein 33 [Source:UniProtKB/Swiss-Prot;Acc:F4JZL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.