Factsheet for Solyc01g005260.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058639	Potato	cytosol	80.83	95.57
Solyc01g005270.2.1	Tomato	cytosol	86.25	86.25
Solyc01g005280.2.1	Tomato	cytosol	84.17	84.17
Solyc01g005290.2.1	Tomato	cytosol	67.08	81.31
KRH70361	Soybean	cytosol	69.17	67.21
VIT_01s0011g05850.t01	Wine grape	cytosol	67.92	67.08
Bra026803.1-P	Field mustard	cytosol	67.92	64.17
CDY33739	Canola	cytosol	67.5	64.03
CDY33738	Canola	cytosol	64.58	63.52
AT1G14820.3	Thale cress	cytosol	66.67	63.49
CDX81674	Canola	cytosol	64.17	63.11
CDY51766	Canola	cytosol	64.17	62.86
CDY45292	Canola	cytosol	64.17	62.86
Bra026185.1-P	Field mustard	cytosol	64.17	62.86
Bra026802.1-P	Field mustard	cytosol	52.92	61.35
CDX81673	Canola	endoplasmic reticulum, golgi	67.5	53.29
CDX81672	Canola	cytosol	67.08	41.93
Solyc03g118150.2.1	Tomato	cytosol	34.58	30.63
Solyc06g068800.2.1	Tomato	cytosol	36.25	28.16
Solyc02g085300.2.1	Tomato	cytosol	20.0	22.22
Solyc04g080290.2.1	Tomato	cytosol	26.25	21.95
Solyc12g089130.1.1	Tomato	cytosol	20.83	21.46
Solyc04g072810.2.1	Tomato	cytosol	25.42	18.71
Solyc03g112640.2.1	Tomato	plastid	20.42	18.7
Solyc09g098600.2.1	Tomato	cytosol	21.25	16.72
Solyc09g075970.2.1	Tomato	cytosol	20.0	11.35

Protein Annotations

EnsemblPlants:Solyc01g005260.2.1	EnsemblPlantsGene:Solyc01g005260.2	Gene3D:1.10.8.20	Gene3D:3.40.525.10	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf
InterPro:CRAL/TRIO_N_dom_sf	InterPro:IPR001251	InterPro:IPR036865	PANTHER:PTHR10174	PANTHER:PTHR10174:SF121	PFAM:PF00650
PFscan:PS50191	SMART:SM00516	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0002761ABC	UniProt:K4AS93
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:195721..199105

Molecular Weight (calculated)

27633.5 Da

IEP (calculated)

8.431

GRAVY (calculated)

-0.291

Length

240 amino acids

Sequence
(BLAST)

001: MDTNQEIALT QMRKSVEKLG SSTESYGEKT LMRFLIARSM NPEKAAKMFC QWKKWRAEMV PLGYITDSEV ADELAAEKIY LQGLSKNGHP VVMVKSNKHF
101: PSKDQVQFKK FVVHLLDKTI ASSFNGRETG NEKLIGVVDL QHITYNNADL RGLITGFQFL QAYYPERLAA CYLLHMPQFF VTVWKFVCRF LDKATQEKVR
201: IVTSEEQMQE FIREVGEDVL PEEYGGRAKL VLLQNVTVNY

Best Arabidopsis Sequence Match ( AT1G14820.3 )
(BLAST)

001: MEESQELALT QLRKSVEKLS SSTEGYDKPT LMRFLVARSM DPVKAAKMFV DWQKWRASMV PPTGFIPESE VQDELEFRKV CLQGPTKSGH PLVLVITSKH
101: FASKDPANFK KFVVYALDKT IASGNNGKEV GGEKLVAVID LANITYKNLD ARGLITGFQF LQSYYPERLA KCYILHMPGF FVTVWKFVCR FLEKATQEKI
201: VIVTDGEEQR KFEEEIGADA LPEEYGGRAK LTAIQDVLLP QAAPVTLTNN NV

Arabidopsis Description

AT1G14820 protein [Source:UniProtKB/TrEMBL;Acc:B9DGS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.